PDB Short entry for 2Q8J HEADER METAL BINDING PROTEIN 11-JUN-07 2Q8J TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF C-LOBE OF BOVINE LACTOFERRIN WITH TITLE 2 MANNITOL AND MANNOSE AT 2.7 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTOTRANSFERRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-LOBE; COMPND 5 SYNONYM: LACTOFERRIN; COMPND 6 EC: 3.4.21.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 OTHER_DETAILS: MILK PROTEIN KEYWDS C-LOBE, COMPLEX, MANNOSE, MANNITOL, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.MIR,R.JAIN,M.SINHA,N.SINGH,S.SHARMA,P.KAUR,A.BHUSHAN,T.P.SINGH REVDAT 5 30-AUG-23 2Q8J 1 HETSYN REVDAT 4 29-JUL-20 2Q8J 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 13-JUL-11 2Q8J 1 VERSN REVDAT 2 24-FEB-09 2Q8J 1 VERSN REVDAT 1 19-JUN-07 2Q8J 0 JRNL AUTH R.MIR,R.JAIN,M.SINHA,N.SINGH,S.SHARMA,P.KAUR,A.BHUSHAN, JRNL AUTH 2 T.P.SINGH JRNL TITL CRYSTAL STRUCTURE OF THE COMPLEX OF C-LOBE OF BOVINE JRNL TITL 2 LACTOFERRIN WITH MANNITOL AND MANNOSE AT 2.7 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 9718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 467 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 698 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.4970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 156 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.48000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.383 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.232 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.292 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.024 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 2.276 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 6.069 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;39.026 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ;20.337 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ;19.984 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.130 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.008 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; 0.271 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; 0.326 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; 0.216 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; 0.240 ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; 0.375 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; 0.203 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; 1.577 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; 2.279 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; 2.939 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; 4.805 ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2Q8J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 6.360 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2DWH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, PEG MONOMETHYLETHER, 0.1M REMARK 280 ZNSO4, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.15000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 677 REMARK 465 SER A 678 REMARK 465 PRO A 679 REMARK 465 LEU A 680 REMARK 465 LEU A 687 REMARK 465 THR A 688 REMARK 465 ARG A 689 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 481 CB CYS A 481 SG -0.114 REMARK 500 CYS A 587 CB CYS A 587 SG -0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 343 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 ASP A 496 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 PRO A 626 C - N - CA ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 343 10.17 37.83 REMARK 500 VAL A 410 -57.23 -122.94 REMARK 500 SER A 418 -70.24 -88.38 REMARK 500 HIS A 420 38.51 85.17 REMARK 500 ALA A 460 142.56 178.73 REMARK 500 VAL A 461 135.69 -36.63 REMARK 500 TRP A 467 -66.04 -136.88 REMARK 500 ALA A 482 29.77 -71.55 REMARK 500 ASP A 508 -158.77 -96.91 REMARK 500 SER A 519 4.88 -66.71 REMARK 500 VAL A 543 -159.05 -131.88 REMARK 500 THR A 557 -1.04 66.61 REMARK 500 LYS A 562 -48.86 -29.17 REMARK 500 ALA A 590 156.50 177.76 REMARK 500 ASN A 594 151.24 -45.01 REMARK 500 CYS A 625 -85.36 -67.02 REMARK 500 LYS A 628 -71.57 -99.65 REMARK 500 SER A 634 44.54 -174.47 REMARK 500 GLU A 635 70.47 35.88 REMARK 500 ASN A 638 61.80 39.03 REMARK 500 LEU A 640 -51.95 66.15 REMARK 500 ARG A 654 62.54 28.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 M2P A 707 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 35 O REMARK 620 2 GLU A 659 OE2 93.5 REMARK 620 3 GLU A 659 OE1 108.7 58.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 804 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 75 O REMARK 620 2 HIS A 588 NE2 96.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 395 OD1 REMARK 620 2 TYR A 433 OH 87.1 REMARK 620 3 TYR A 526 OH 172.9 95.1 REMARK 620 4 HIS A 595 NE2 81.0 97.9 92.0 REMARK 620 5 CO3 A 802 O1 91.7 154.1 89.2 107.5 REMARK 620 6 CO3 A 802 O2 87.2 95.4 99.3 161.7 58.7 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FA7 RELATED DB: PDB REMARK 900 RELATED ID: 2DWH RELATED DB: PDB REMARK 900 RELATED ID: 2BD6 RELATED DB: PDB DBREF 2Q8J A 342 689 UNP P24627 TRFL_BOVIN 361 708 SEQADV 2Q8J LYS A 565 UNP P24627 ASN 584 CONFLICT SEQADV 2Q8J GLU A 608 UNP P24627 LYS 627 CONFLICT SEQRES 1 A 348 TYR THR ARG VAL VAL TRP CYS ALA VAL GLY PRO GLU GLU SEQRES 2 A 348 GLN LYS LYS CYS GLN GLN TRP SER GLN GLN SER GLY GLN SEQRES 3 A 348 ASN VAL THR CYS ALA THR ALA SER THR THR ASP ASP CYS SEQRES 4 A 348 ILE VAL LEU VAL LEU LYS GLY GLU ALA ASP ALA LEU ASN SEQRES 5 A 348 LEU ASP GLY GLY TYR ILE TYR THR ALA GLY LYS CYS GLY SEQRES 6 A 348 LEU VAL PRO VAL LEU ALA GLU ASN ARG LYS SER SER LYS SEQRES 7 A 348 HIS SER SER LEU ASP CYS VAL LEU ARG PRO THR GLU GLY SEQRES 8 A 348 TYR LEU ALA VAL ALA VAL VAL LYS LYS ALA ASN GLU GLY SEQRES 9 A 348 LEU THR TRP ASN SER LEU LYS ASP LYS LYS SER CYS HIS SEQRES 10 A 348 THR ALA VAL ASP ARG THR ALA GLY TRP ASN ILE PRO MET SEQRES 11 A 348 GLY LEU ILE VAL ASN GLN THR GLY SER CYS ALA PHE ASP SEQRES 12 A 348 GLU PHE PHE SER GLN SER CYS ALA PRO GLY ALA ASP PRO SEQRES 13 A 348 LYS SER ARG LEU CYS ALA LEU CYS ALA GLY ASP ASP GLN SEQRES 14 A 348 GLY LEU ASP LYS CYS VAL PRO ASN SER LYS GLU LYS TYR SEQRES 15 A 348 TYR GLY TYR THR GLY ALA PHE ARG CYS LEU ALA GLU ASP SEQRES 16 A 348 VAL GLY ASP VAL ALA PHE VAL LYS ASN ASP THR VAL TRP SEQRES 17 A 348 GLU ASN THR ASN GLY GLU SER THR ALA ASP TRP ALA LYS SEQRES 18 A 348 ASN LEU LYS ARG GLU ASP PHE ARG LEU LEU CYS LEU ASP SEQRES 19 A 348 GLY THR ARG LYS PRO VAL THR GLU ALA GLN SER CYS HIS SEQRES 20 A 348 LEU ALA VAL ALA PRO ASN HIS ALA VAL VAL SER ARG SER SEQRES 21 A 348 ASP ARG ALA ALA HIS VAL GLU GLN VAL LEU LEU HIS GLN SEQRES 22 A 348 GLN ALA LEU PHE GLY LYS ASN GLY LYS ASN CYS PRO ASP SEQRES 23 A 348 LYS PHE CYS LEU PHE LYS SER GLU THR LYS ASN LEU LEU SEQRES 24 A 348 PHE ASN ASP ASN THR GLU CYS LEU ALA LYS LEU GLY GLY SEQRES 25 A 348 ARG PRO THR TYR GLU GLU TYR LEU GLY THR GLU TYR VAL SEQRES 26 A 348 THR ALA ILE ALA ASN LEU LYS LYS CYS SER THR SER PRO SEQRES 27 A 348 LEU LEU GLU ALA CYS ALA PHE LEU THR ARG MODRES 2Q8J ASN A 368 ASN GLYCOSYLATION SITE MODRES 2Q8J ASN A 476 ASN GLYCOSYLATION SITE MODRES 2Q8J ASN A 545 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET MAN B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG A 701 14 HET BMA A 708 12 HET FE A 801 1 HET CO3 A 802 4 HET ZN A 803 1 HET ZN A 804 1 HET SO4 A 805 5 HET M2P A 707 12 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FE FE (III) ION HETNAM CO3 CARBONATE ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM M2P D-MANNITOL-1,6-DIPHOSPHATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN M2P 1,6-DI-O-PHOSPHONO-D-MANNITOL FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 2 MAN C6 H12 O6 FORMUL 5 BMA C6 H12 O6 FORMUL 6 FE FE 3+ FORMUL 7 CO3 C O3 2- FORMUL 8 ZN 2(ZN 2+) FORMUL 10 SO4 O4 S 2- FORMUL 11 M2P C6 H16 O12 P2 FORMUL 12 HOH *156(H2 O) HELIX 1 1 GLY A 351 SER A 365 1 15 HELIX 2 2 THR A 376 LYS A 386 1 11 HELIX 3 3 ASP A 395 CYS A 405 1 11 HELIX 4 4 THR A 447 LEU A 451 5 5 HELIX 5 5 TRP A 467 GLY A 479 1 13 HELIX 6 6 ALA A 482 PHE A 486 5 5 HELIX 7 7 SER A 499 ALA A 503 5 5 HELIX 8 8 TYR A 524 GLU A 535 1 12 HELIX 9 9 ASN A 545 ASN A 551 1 7 HELIX 10 10 LYS A 565 GLU A 567 5 3 HELIX 11 11 PRO A 580 CYS A 587 5 8 HELIX 12 12 ARG A 603 GLY A 619 1 17 HELIX 13 13 THR A 656 GLY A 662 1 7 HELIX 14 14 GLY A 662 LYS A 674 1 13 SHEET 1 A 2 VAL A 345 VAL A 350 0 SHEET 2 A 2 VAL A 369 ALA A 374 1 O ALA A 372 N ALA A 349 SHEET 1 B 4 ALA A 391 LEU A 394 0 SHEET 2 B 4 ALA A 596 ARG A 600 -1 O ALA A 596 N LEU A 394 SHEET 3 B 4 LEU A 407 ASN A 414 -1 N LEU A 411 O VAL A 597 SHEET 4 B 4 CYS A 647 ALA A 649 -1 O ALA A 649 N ALA A 412 SHEET 1 C 6 GLN A 489 CYS A 491 0 SHEET 2 C 6 LYS A 455 HIS A 458 1 N HIS A 458 O CYS A 491 SHEET 3 C 6 VAL A 540 LYS A 544 1 O VAL A 540 N CYS A 457 SHEET 4 C 6 TYR A 433 LYS A 440 -1 N VAL A 438 O ALA A 541 SHEET 5 C 6 PHE A 569 LEU A 572 -1 O LEU A 572 N ALA A 437 SHEET 6 C 6 ARG A 578 LYS A 579 -1 O LYS A 579 N LEU A 571 SHEET 1 D 5 GLN A 489 CYS A 491 0 SHEET 2 D 5 LYS A 455 HIS A 458 1 N HIS A 458 O CYS A 491 SHEET 3 D 5 VAL A 540 LYS A 544 1 O VAL A 540 N CYS A 457 SHEET 4 D 5 TYR A 433 LYS A 440 -1 N VAL A 438 O ALA A 541 SHEET 5 D 5 ALA A 590 ALA A 592 -1 O ALA A 592 N TYR A 433 SSBOND 1 CYS A 348 CYS A 380 1555 1555 1.98 SSBOND 2 CYS A 358 CYS A 371 1555 1555 2.08 SSBOND 3 CYS A 405 CYS A 684 1555 1555 2.02 SSBOND 4 CYS A 425 CYS A 647 1555 1555 2.01 SSBOND 5 CYS A 457 CYS A 532 1555 1555 2.03 SSBOND 6 CYS A 481 CYS A 675 1555 1555 1.99 SSBOND 7 CYS A 491 CYS A 505 1555 1555 2.00 SSBOND 8 CYS A 502 CYS A 515 1555 1555 2.02 SSBOND 9 CYS A 573 CYS A 587 1555 1555 2.04 SSBOND 10 CYS A 625 CYS A 630 1555 1555 2.06 LINK ND2 ASN A 368 C1 NAG A 701 1555 1555 1.45 LINK ND2 ASN A 476 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 545 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.49 LINK O4 NAG B 2 C1 MAN B 3 1555 1555 1.47 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O HOH A 35 ZN ZN A 803 1555 1555 2.12 LINK O HOH A 75 ZN ZN A 804 1555 1555 2.11 LINK OD1 ASP A 395 FE FE A 801 1555 1555 2.16 LINK OH TYR A 433 FE FE A 801 1555 1555 1.99 LINK OH TYR A 526 FE FE A 801 1555 1555 1.72 LINK NE2 HIS A 588 ZN ZN A 804 1555 1555 2.18 LINK NE2 HIS A 595 FE FE A 801 1555 1555 2.26 LINK OE2 GLU A 659 ZN ZN A 803 1555 1555 2.26 LINK OE1 GLU A 659 ZN ZN A 803 1555 1555 2.43 LINK FE FE A 801 O1 CO3 A 802 1555 1555 2.35 LINK FE FE A 801 O2 CO3 A 802 1555 1555 2.21 CRYST1 63.400 50.300 65.900 90.00 107.80 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015773 0.000000 0.005064 0.00000 SCALE2 0.000000 0.019881 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015937 0.00000