PDB Short entry for 2QAD HEADER VIRAL PROTEIN/IMMUNE SYSTEM 14-JUN-07 2QAD TITLE STRUCTURE OF TYROSINE-SULFATED 412D ANTIBODY COMPLEXED WITH HIV-1 YU2 TITLE 2 GP120 AND CD4 CAVEAT 2QAD NAG A 862 HAS WRONG CHIRALITY AT ATOM C1 NAG A 894 HAS WRONG CAVEAT 2 2QAD CHIRALITY AT ATOM C1 NAG E 862 HAS WRONG CHIRALITY AT ATOM CAVEAT 3 2QAD C1 NAG E 963 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: CORE WITH V3; COMPND 5 SYNONYM: ENV POLYPROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: T-CELL SURFACE GLYCOPROTEIN CD4; COMPND 9 CHAIN: B, F; COMPND 10 FRAGMENT: D1D2, IG-LIKE V-TYPE AND IG-LIKE C2-TYPE 1 DOMAINS; COMPND 11 SYNONYM: T-CELL SURFACE ANTIGEN T4/LEU-3; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: ANTI-HIV-1 ANTIBODY 412D LIGHT CHAIN; COMPND 15 CHAIN: C, G; COMPND 16 FRAGMENT: FAB, ANTIGEN-BINDING FRAGMENT; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: ANTI-HIV-1 ANTIBODY 412D HEAVY CHAIN; COMPND 20 CHAIN: D, H; COMPND 21 FRAGMENT: FAB, ANTIGEN-BINDING FRAGMENT; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 STRAIN: YU2; SOURCE 5 GENE: ENV; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: EMBRYONIC CELL LINE 293; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: CMVR; SOURCE 12 MOL_ID: 2; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: CD4; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: HUMAN HERPESVIRUS 4; SOURCE 24 EXPRESSION_SYSTEM_COMMON: EPSTEIN-BARR VIRUS; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 10376; SOURCE 26 EXPRESSION_SYSTEM_STRAIN: EPSTEIN-BARR VIRUS; SOURCE 27 MOL_ID: 4; SOURCE 28 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 29 ORGANISM_COMMON: HUMAN; SOURCE 30 ORGANISM_TAXID: 9606; SOURCE 31 EXPRESSION_SYSTEM: HUMAN HERPESVIRUS 4; SOURCE 32 EXPRESSION_SYSTEM_COMMON: EPSTEIN-BARR VIRUS; SOURCE 33 EXPRESSION_SYSTEM_TAXID: 10376; SOURCE 34 EXPRESSION_SYSTEM_STRAIN: EPSTEIN-BARR VIRUS KEYWDS VIRAL PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.-C.HUANG,M.TANG,J.ROBINSON,R.WYATT,P.D.KWONG REVDAT 11 15-NOV-23 2QAD 1 REMARK REVDAT 10 30-AUG-23 2QAD 1 HETSYN REVDAT 9 29-JUL-20 2QAD 1 CAVEAT COMPND REMARK HETNAM REVDAT 9 2 1 LINK SITE REVDAT 8 24-JUL-19 2QAD 1 REMARK LINK REVDAT 7 18-OCT-17 2QAD 1 REMARK REVDAT 6 16-AUG-17 2QAD 1 SOURCE REMARK REVDAT 5 29-APR-15 2QAD 1 HETSYN REVDAT 4 13-JUL-11 2QAD 1 VERSN REVDAT 3 24-FEB-09 2QAD 1 VERSN REVDAT 2 09-OCT-07 2QAD 1 JRNL REVDAT 1 25-SEP-07 2QAD 0 JRNL AUTH C.-C.HUANG,S.N.LAM,P.ACHARYA,M.TANG,S.-H.XIANG,S.S.HUSSAN, JRNL AUTH 2 R.L.STANFIELD,J.ROBINSON,J.SODROSKI,I.A.WILSON,R.WYATT, JRNL AUTH 3 C.A.BEWLEY,P.D.KWONG JRNL TITL STRUCTURES OF THE CCR5 N TERMINUS AND OF A TYROSINE-SULFATED JRNL TITL 2 ANTIBODY WITH HIV-1 GP120 AND CD4 JRNL REF SCIENCE V. 317 1930 2007 JRNL REFN ISSN 0036-8075 JRNL PMID 17901336 JRNL DOI 10.1126/SCIENCE.1145373 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 66.7 REMARK 3 NUMBER OF REFLECTIONS : 25600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 156.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -46.38600 REMARK 3 B22 (A**2) : 16.91000 REMARK 3 B33 (A**2) : 29.47500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -20.02100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT WAS PERFORMED WITH REMARK 3 PHENIX. THE ANISOTROPIC B-FACTOR IN ANISOU RECORDS IS THE TOTAL REMARK 3 B-FACTOR (B_TLS + B_INDIVIDUAL). THE ISOTROPIC EQUIVALENT B- REMARK 3 FACTOR IN ATOM RECORDS IS THE MEAN OF THE TRACE OF THE ANISOU REMARK 3 MATRIX DIVIDED BY 10000 AND MULTIPLIED BY 8*PI^2 AND REPRESENTS REMARK 3 THE ISOTROPIC EQUIVALENT OF THE TOTAL B-FACTOR (B_TLS + B_ REMARK 3 INDIVIDUAL). TO OBTAIN THE INDIVIDUAL B-FACTORS, ONE NEEDS TO REMARK 3 COMPUTE THE TLS COMPONENT (B_TLS) USING THE TLS RECORDS IN THE REMARK 3 PDB FILE HEADER AND THEN SUBTRACT IT FROM THE TOTAL B-FACTORS REMARK 3 (ON THE ANISOU RECORDS). REMARK 4 REMARK 4 2QAD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI (220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25816 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 67.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : 0.13300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 16.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: YU2CORE/CD4 D1D2 FROM PDB ENTRY 1RZK AND 412D FAB REMARK 200 FROM PDB ENTRY 1RZG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17-19% POLYETHYLENE GLYCOL (PEG) 1500, REMARK 280 0.1 M NA CACODYLATE PH 6.5, 0.2 M NA MALONATE, PH 5.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.51050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF TWO GP120/CD4/412D COMPLEXES. CHAIN A, B, C, AND REMARK 300 D FORM ONE COMPLEX, AND CHAIN E, F, G, AND H FORM THE OTHER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25710 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 89 REMARK 465 LYS A 398 REMARK 465 LEU A 399 REMARK 465 PHE B 179 REMARK 465 GLN B 180 REMARK 465 LYS B 181 REMARK 465 CYS C 214 REMARK 465 VAL E 89 REMARK 465 THR E 404 REMARK 465 ARG E 405 REMARK 465 LYS E 406 REMARK 465 LEU E 407 REMARK 465 ASN E 408 REMARK 465 ASN E 409 REMARK 465 THR E 410 REMARK 465 GLY E 411 REMARK 465 ARG E 412 REMARK 465 GLN F 180 REMARK 465 LYS F 181 REMARK 465 CYS G 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 397 O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN E 332 C2 NAG E 832 2.05 REMARK 500 ND2 ASN A 289 C2 NAG A 789 2.10 REMARK 500 ND2 ASN E 301 C2 NAG E 801 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 214 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 97 51.10 -109.02 REMARK 500 ASP A 113 31.85 -75.52 REMARK 500 GLN A 114 -17.68 -149.24 REMARK 500 LEU A 116 73.82 -175.82 REMARK 500 VAL A 120 123.58 -177.30 REMARK 500 PRO A 212 106.11 -52.93 REMARK 500 PRO A 214 146.76 -37.94 REMARK 500 ASN A 229 66.94 -108.37 REMARK 500 PRO A 238 129.93 -38.16 REMARK 500 ASN A 241 59.19 -97.18 REMARK 500 GLN A 258 -34.52 63.08 REMARK 500 GLU A 268 -108.63 -90.26 REMARK 500 THR A 297 136.05 -170.64 REMARK 500 ASN A 300 33.06 -95.39 REMARK 500 ILE A 326 5.16 -68.15 REMARK 500 ALA A 329 -160.70 -126.45 REMARK 500 GLU A 351 42.97 -90.99 REMARK 500 GLN A 352 -35.80 -156.11 REMARK 500 PRO A 363 171.77 -53.65 REMARK 500 HIS A 374 97.59 -53.94 REMARK 500 PHE A 376 169.67 174.19 REMARK 500 ASN A 386 86.88 -56.04 REMARK 500 SER A 387 39.12 -86.06 REMARK 500 PHE A 391 46.87 -104.43 REMARK 500 ASP A 395 -42.41 74.09 REMARK 500 THR A 402 -93.95 -81.83 REMARK 500 ARG A 412 -147.92 -119.50 REMARK 500 ASP A 457 100.10 -162.37 REMARK 500 ASP A 461 104.94 65.08 REMARK 500 THR A 462 57.07 -95.47 REMARK 500 ASN A 463 -61.54 74.51 REMARK 500 ILE A 491 69.42 -104.36 REMARK 500 SER B 19 -80.31 -54.40 REMARK 500 ASN B 30 -155.89 -93.11 REMARK 500 ASP B 56 -155.23 -166.26 REMARK 500 SER B 57 145.19 176.05 REMARK 500 PHE B 67 74.01 -113.39 REMARK 500 LYS B 75 -145.52 -85.51 REMARK 500 SER B 79 109.58 -51.36 REMARK 500 ASP B 88 -44.73 76.65 REMARK 500 ASN B 103 31.14 -95.47 REMARK 500 PRO B 122 85.67 -69.39 REMARK 500 GLN B 129 79.87 -157.49 REMARK 500 ARG B 131 117.63 -160.00 REMARK 500 LYS B 136 97.00 -67.63 REMARK 500 SER B 147 -99.84 -67.56 REMARK 500 GLN B 163 108.93 -176.90 REMARK 500 ASN B 164 49.92 71.85 REMARK 500 GLN B 165 17.12 58.18 REMARK 500 SER C 30 -136.22 63.22 REMARK 500 REMARK 500 THIS ENTRY HAS 199 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2QAD A 89 121 UNP P35961 ENV_HV1Y2 88 120 DBREF 2QAD A 199 492 UNP P35961 ENV_HV1Y2 195 479 DBREF 2QAD B 1 181 UNP P01730 CD4_HUMAN 26 206 DBREF 2QAD E 89 121 UNP P35961 ENV_HV1Y2 88 120 DBREF 2QAD E 199 492 UNP P35961 ENV_HV1Y2 195 479 DBREF 2QAD F 1 181 UNP P01730 CD4_HUMAN 26 206 DBREF 2QAD C 1 214 UNP Q6GMX8 Q6GMX8_HUMAN 23 236 DBREF 2QAD D 36 214 UNP A4F255 A4F255_HUMAN 33 228 DBREF 2QAD G 1 214 UNP Q6GMX8 Q6GMX8_HUMAN 23 236 DBREF 2QAD H 36 214 UNP A4F255 A4F255_HUMAN 33 228 SEQRES 1 A 322 VAL THR GLU ASN PHE ASN MET TRP LYS ASN ASN MET VAL SEQRES 2 A 322 GLU GLN MET HIS GLU ASP ILE ILE SER LEU TRP ASP GLN SEQRES 3 A 322 SER LEU LYS PRO CYS VAL LYS LEU THR GLY GLY SER VAL SEQRES 4 A 322 ILE THR GLN ALA CYS PRO LYS VAL SER PHE GLU PRO ILE SEQRES 5 A 322 PRO ILE HIS TYR CYS ALA PRO ALA GLY PHE ALA ILE LEU SEQRES 6 A 322 LYS CYS ASN ASP LYS LYS PHE ASN GLY THR GLY PRO CYS SEQRES 7 A 322 THR ASN VAL SER THR VAL GLN CYS THR HIS GLY ILE ARG SEQRES 8 A 322 PRO VAL VAL SER THR GLN LEU LEU LEU ASN GLY SER LEU SEQRES 9 A 322 ALA GLU GLU GLU ILE VAL ILE ARG SER GLU ASN PHE THR SEQRES 10 A 322 ASN ASN ALA LYS THR ILE ILE VAL GLN LEU ASN GLU SER SEQRES 11 A 322 VAL VAL ILE ASN CYS THR ARG PRO ASN ASN ASN THR ARG SEQRES 12 A 322 LYS SER ILE ASN ILE GLY PRO GLY ARG ALA LEU TYR THR SEQRES 13 A 322 THR GLY GLU ILE ILE GLY ASP ILE ARG GLN ALA HIS CYS SEQRES 14 A 322 ASN LEU SER LYS THR GLN TRP GLU ASN THR LEU GLU GLN SEQRES 15 A 322 ILE ALA ILE LYS LEU LYS GLU GLN PHE GLY ASN ASN LYS SEQRES 16 A 322 THR ILE ILE PHE ASN PRO SER SER GLY GLY ASP PRO GLU SEQRES 17 A 322 ILE VAL THR HIS SER PHE ASN CYS GLY GLY GLU PHE PHE SEQRES 18 A 322 TYR CYS ASN SER THR GLN LEU PHE THR TRP ASN ASP THR SEQRES 19 A 322 ARG LYS LEU ASN ASN THR GLY ARG ASN ILE THR LEU PRO SEQRES 20 A 322 CYS ARG ILE LYS GLN ILE ILE ASN MET TRP GLN GLU VAL SEQRES 21 A 322 GLY LYS ALA MET TYR ALA PRO PRO ILE ARG GLY GLN ILE SEQRES 22 A 322 ARG CYS SER SER ASN ILE THR GLY LEU LEU LEU THR ARG SEQRES 23 A 322 ASP GLY GLY LYS ASP THR ASN GLY THR GLU ILE PHE ARG SEQRES 24 A 322 PRO GLY GLY GLY ASP MET ARG ASP ASN TRP ARG SER GLU SEQRES 25 A 322 LEU TYR LYS TYR LYS VAL VAL LYS ILE GLU SEQRES 1 B 181 LYS LYS VAL VAL LEU GLY LYS LYS GLY ASP THR VAL GLU SEQRES 2 B 181 LEU THR CYS THR ALA SER GLN LYS LYS SER ILE GLN PHE SEQRES 3 B 181 HIS TRP LYS ASN SER ASN GLN ILE LYS ILE LEU GLY ASN SEQRES 4 B 181 GLN GLY SER PHE LEU THR LYS GLY PRO SER LYS LEU ASN SEQRES 5 B 181 ASP ARG ALA ASP SER ARG ARG SER LEU TRP ASP GLN GLY SEQRES 6 B 181 ASN PHE PRO LEU ILE ILE LYS ASN LEU LYS ILE GLU ASP SEQRES 7 B 181 SER ASP THR TYR ILE CYS GLU VAL GLU ASP GLN LYS GLU SEQRES 8 B 181 GLU VAL GLN LEU LEU VAL PHE GLY LEU THR ALA ASN SER SEQRES 9 B 181 ASP THR HIS LEU LEU GLN GLY GLN SER LEU THR LEU THR SEQRES 10 B 181 LEU GLU SER PRO PRO GLY SER SER PRO SER VAL GLN CYS SEQRES 11 B 181 ARG SER PRO ARG GLY LYS ASN ILE GLN GLY GLY LYS THR SEQRES 12 B 181 LEU SER VAL SER GLN LEU GLU LEU GLN ASP SER GLY THR SEQRES 13 B 181 TRP THR CYS THR VAL LEU GLN ASN GLN LYS LYS VAL GLU SEQRES 14 B 181 PHE LYS ILE ASP ILE VAL VAL LEU ALA PHE GLN LYS SEQRES 1 C 214 ASP ILE GLN MET THR GLN SER PRO SER THR LEU SER ALA SEQRES 2 C 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 C 214 GLN SER ILE SER ASN TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 C 214 PRO GLY ARG ALA PRO LYS LEU LEU MET TYR LYS ALA SER SEQRES 5 C 214 SER LEU LYS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 C 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 C 214 GLN SER ASP ASP PHE ALA THR TYR TYR CYS GLN GLN HIS SEQRES 8 C 214 ASP SER SER PRO TYR THR PHE GLY GLN GLY THR LYS LEU SEQRES 9 C 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 C 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 C 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 C 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 C 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 C 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 C 214 LYS ALA ASP TYR GLU LYS HIS LYS LEU TYR ALA CYS GLU SEQRES 16 C 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 C 214 PHE ASN ARG GLY GLU CYS SEQRES 1 D 231 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 D 231 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 D 231 GLY THR PHE SER ASN TYR ALA ILE ASN TRP VAL ARG GLN SEQRES 4 D 231 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 D 231 PRO ILE PHE ASN ILE ALA HIS TYR ALA GLN ARG PHE GLN SEQRES 6 D 231 GLY ARG VAL SER ILE THR ALA ASP GLU SER THR SER THR SEQRES 7 D 231 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 D 231 ALA VAL PHE TYR CYS ALA SER PRO TYR PRO ASN ASP TYS SEQRES 9 D 231 ASN ASP TYS ALA PRO GLU GLU GLY MET SER TRP TYR PHE SEQRES 10 D 231 ASP LEU TRP GLY ARG GLY THR LEU VAL THR VAL SER PRO SEQRES 11 D 231 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 12 D 231 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 13 D 231 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 14 D 231 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 15 D 231 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 16 D 231 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 17 D 231 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 18 D 231 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 1 E 322 VAL THR GLU ASN PHE ASN MET TRP LYS ASN ASN MET VAL SEQRES 2 E 322 GLU GLN MET HIS GLU ASP ILE ILE SER LEU TRP ASP GLN SEQRES 3 E 322 SER LEU LYS PRO CYS VAL LYS LEU THR GLY GLY SER VAL SEQRES 4 E 322 ILE THR GLN ALA CYS PRO LYS VAL SER PHE GLU PRO ILE SEQRES 5 E 322 PRO ILE HIS TYR CYS ALA PRO ALA GLY PHE ALA ILE LEU SEQRES 6 E 322 LYS CYS ASN ASP LYS LYS PHE ASN GLY THR GLY PRO CYS SEQRES 7 E 322 THR ASN VAL SER THR VAL GLN CYS THR HIS GLY ILE ARG SEQRES 8 E 322 PRO VAL VAL SER THR GLN LEU LEU LEU ASN GLY SER LEU SEQRES 9 E 322 ALA GLU GLU GLU ILE VAL ILE ARG SER GLU ASN PHE THR SEQRES 10 E 322 ASN ASN ALA LYS THR ILE ILE VAL GLN LEU ASN GLU SER SEQRES 11 E 322 VAL VAL ILE ASN CYS THR ARG PRO ASN ASN ASN THR ARG SEQRES 12 E 322 LYS SER ILE ASN ILE GLY PRO GLY ARG ALA LEU TYR THR SEQRES 13 E 322 THR GLY GLU ILE ILE GLY ASP ILE ARG GLN ALA HIS CYS SEQRES 14 E 322 ASN LEU SER LYS THR GLN TRP GLU ASN THR LEU GLU GLN SEQRES 15 E 322 ILE ALA ILE LYS LEU LYS GLU GLN PHE GLY ASN ASN LYS SEQRES 16 E 322 THR ILE ILE PHE ASN PRO SER SER GLY GLY ASP PRO GLU SEQRES 17 E 322 ILE VAL THR HIS SER PHE ASN CYS GLY GLY GLU PHE PHE SEQRES 18 E 322 TYR CYS ASN SER THR GLN LEU PHE THR TRP ASN ASP THR SEQRES 19 E 322 ARG LYS LEU ASN ASN THR GLY ARG ASN ILE THR LEU PRO SEQRES 20 E 322 CYS ARG ILE LYS GLN ILE ILE ASN MET TRP GLN GLU VAL SEQRES 21 E 322 GLY LYS ALA MET TYR ALA PRO PRO ILE ARG GLY GLN ILE SEQRES 22 E 322 ARG CYS SER SER ASN ILE THR GLY LEU LEU LEU THR ARG SEQRES 23 E 322 ASP GLY GLY LYS ASP THR ASN GLY THR GLU ILE PHE ARG SEQRES 24 E 322 PRO GLY GLY GLY ASP MET ARG ASP ASN TRP ARG SER GLU SEQRES 25 E 322 LEU TYR LYS TYR LYS VAL VAL LYS ILE GLU SEQRES 1 F 181 LYS LYS VAL VAL LEU GLY LYS LYS GLY ASP THR VAL GLU SEQRES 2 F 181 LEU THR CYS THR ALA SER GLN LYS LYS SER ILE GLN PHE SEQRES 3 F 181 HIS TRP LYS ASN SER ASN GLN ILE LYS ILE LEU GLY ASN SEQRES 4 F 181 GLN GLY SER PHE LEU THR LYS GLY PRO SER LYS LEU ASN SEQRES 5 F 181 ASP ARG ALA ASP SER ARG ARG SER LEU TRP ASP GLN GLY SEQRES 6 F 181 ASN PHE PRO LEU ILE ILE LYS ASN LEU LYS ILE GLU ASP SEQRES 7 F 181 SER ASP THR TYR ILE CYS GLU VAL GLU ASP GLN LYS GLU SEQRES 8 F 181 GLU VAL GLN LEU LEU VAL PHE GLY LEU THR ALA ASN SER SEQRES 9 F 181 ASP THR HIS LEU LEU GLN GLY GLN SER LEU THR LEU THR SEQRES 10 F 181 LEU GLU SER PRO PRO GLY SER SER PRO SER VAL GLN CYS SEQRES 11 F 181 ARG SER PRO ARG GLY LYS ASN ILE GLN GLY GLY LYS THR SEQRES 12 F 181 LEU SER VAL SER GLN LEU GLU LEU GLN ASP SER GLY THR SEQRES 13 F 181 TRP THR CYS THR VAL LEU GLN ASN GLN LYS LYS VAL GLU SEQRES 14 F 181 PHE LYS ILE ASP ILE VAL VAL LEU ALA PHE GLN LYS SEQRES 1 G 214 ASP ILE GLN MET THR GLN SER PRO SER THR LEU SER ALA SEQRES 2 G 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 G 214 GLN SER ILE SER ASN TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 G 214 PRO GLY ARG ALA PRO LYS LEU LEU MET TYR LYS ALA SER SEQRES 5 G 214 SER LEU LYS SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 G 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 G 214 GLN SER ASP ASP PHE ALA THR TYR TYR CYS GLN GLN HIS SEQRES 8 G 214 ASP SER SER PRO TYR THR PHE GLY GLN GLY THR LYS LEU SEQRES 9 G 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 G 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 G 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 G 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 G 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 G 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 G 214 LYS ALA ASP TYR GLU LYS HIS LYS LEU TYR ALA CYS GLU SEQRES 16 G 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 G 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 231 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 231 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 231 GLY THR PHE SER ASN TYR ALA ILE ASN TRP VAL ARG GLN SEQRES 4 H 231 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 H 231 PRO ILE PHE ASN ILE ALA HIS TYR ALA GLN ARG PHE GLN SEQRES 6 H 231 GLY ARG VAL SER ILE THR ALA ASP GLU SER THR SER THR SEQRES 7 H 231 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 231 ALA VAL PHE TYR CYS ALA SER PRO TYR PRO ASN ASP TYS SEQRES 9 H 231 ASN ASP TYS ALA PRO GLU GLU GLY MET SER TRP TYR PHE SEQRES 10 H 231 ASP LEU TRP GLY ARG GLY THR LEU VAL THR VAL SER PRO SEQRES 11 H 231 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 12 H 231 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 13 H 231 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 14 H 231 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 15 H 231 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 16 H 231 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 17 H 231 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 18 H 231 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS MODRES 2QAD ASN A 234 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 241 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 262 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 276 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 289 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 295 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 301 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 332 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 356 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 362 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 386 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 394 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 400 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 413 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 448 ASN GLYCOSYLATION SITE MODRES 2QAD ASN A 463 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 234 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 241 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 262 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 276 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 289 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 295 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 301 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 332 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 356 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 362 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 386 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 394 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 413 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 448 ASN GLYCOSYLATION SITE MODRES 2QAD ASN E 463 ASN GLYCOSYLATION SITE MODRES 2QAD TYS D 100 TYR O-SULFO-L-TYROSINE MODRES 2QAD TYS D 100C TYR O-SULFO-L-TYROSINE MODRES 2QAD TYS H 100 TYR O-SULFO-L-TYROSINE MODRES 2QAD TYS H 100C TYR O-SULFO-L-TYROSINE HET TYS D 100 16 HET TYS D 100C 16 HET TYS H 100 16 HET TYS H 100C 16 HET NAG A 734 14 HET NAG A 741 14 HET NAG A 762 14 HET NAG A 776 14 HET NAG A 789 14 HET NAG A 795 14 HET NAG A 801 14 HET NAG A 832 14 HET NAG A 856 14 HET NAG A 862 14 HET NAG A 886 14 HET NAG A 894 14 HET NAG A 900 14 HET NAG A 913 14 HET NAG A 948 14 HET NAG A 963 14 HET MLA A 3 7 HET EDO A 8 4 HET MLA B 186 7 HET EDO C 215 4 HET EDO C 216 4 HET EDO D 215 4 HET NAG E 734 14 HET NAG E 741 14 HET NAG E 762 14 HET NAG E 776 14 HET NAG E 789 14 HET NAG E 795 14 HET NAG E 801 14 HET NAG E 832 14 HET NAG E 856 14 HET NAG E 862 14 HET NAG E 886 14 HET NAG E 894 14 HET NAG E 913 14 HET NAG E 948 14 HET NAG E 963 14 HET EDO E 7 4 HET EDO E 10 4 HET MLA F 186 7 HET EDO F 187 4 HET MLA H 215 7 HETNAM TYS O-SULFO-L-TYROSINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MLA MALONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 4 TYS 4(C9 H11 N O6 S) FORMUL 9 NAG 31(C8 H15 N O6) FORMUL 25 MLA 4(C3 H4 O4) FORMUL 26 EDO 7(C2 H6 O2) HELIX 1 1 ASN A 99 ASP A 113 1 15 HELIX 2 2 LYS A 335 GLY A 354 1 20 HELIX 3 3 ASP A 368 THR A 373 1 6 HELIX 4 4 ASP A 474 SER A 481 1 8 HELIX 5 5 ARG B 58 GLY B 65 5 8 HELIX 6 6 GLU B 150 SER B 154 5 5 HELIX 7 7 SER C 121 LYS C 126 1 6 HELIX 8 8 LYS C 183 LYS C 188 1 6 HELIX 9 9 THR D 28 TYR D 32 5 5 HELIX 10 10 GLN D 61 GLN D 64 5 4 HELIX 11 11 ARG D 83 THR D 87 5 5 HELIX 12 12 HIS D 200 ASN D 204 5 5 HELIX 13 13 ASN E 99 ASP E 113 1 15 HELIX 14 14 SER E 334 GLY E 354 1 21 HELIX 15 15 ASP E 368 THR E 373 1 6 HELIX 16 16 ASP E 474 SER E 481 1 8 HELIX 17 17 ARG F 58 GLY F 65 5 8 HELIX 18 18 GLU F 150 SER F 154 5 5 HELIX 19 19 SER G 121 LYS G 126 1 6 HELIX 20 20 LYS G 183 LYS G 188 1 6 HELIX 21 21 THR H 28 TYR H 32 5 5 HELIX 22 22 GLN H 61 GLN H 64 5 4 HELIX 23 23 ARG H 83 THR H 87 5 5 HELIX 24 24 HIS H 200 ASN H 204 5 5 SHEET 1 A 4 VAL A 200 THR A 202 0 SHEET 2 A 4 VAL A 120 LEU A 122 -1 N LYS A 121 O ILE A 201 SHEET 3 A 4 LYS A 432 MET A 434 -1 O LYS A 432 N LEU A 122 SHEET 4 A 4 ILE A 423 ASN A 425 -1 N ILE A 424 O ALA A 433 SHEET 1 B 2 ILE A 215 TYR A 217 0 SHEET 2 B 2 ILE E 307 ILE E 309 1 O ILE E 309 N HIS A 216 SHEET 1 C 3 VAL A 242 VAL A 245 0 SHEET 2 C 3 PHE A 223 CYS A 228 -1 N LYS A 227 O SER A 243 SHEET 3 C 3 TYR A 486 LYS A 490 -1 O VAL A 489 N ALA A 224 SHEET 1 D 5 LEU A 259 LEU A 261 0 SHEET 2 D 5 ILE A 443 ARG A 456 -1 O GLY A 451 N LEU A 260 SHEET 3 D 5 ILE A 284 ARG A 298 -1 N VAL A 292 O ILE A 449 SHEET 4 D 5 GLU A 466 PRO A 470 0 SHEET 5 D 5 ILE A 359 PHE A 361 1 N ILE A 360 O PHE A 468 SHEET 1 E 5 VAL A 271 SER A 274 0 SHEET 2 E 5 ILE A 284 ARG A 298 -1 O ILE A 285 N ARG A 273 SHEET 3 E 5 ILE A 443 ARG A 456 -1 O ILE A 449 N VAL A 292 SHEET 4 E 5 GLN A 328 SER A 334 0 SHEET 5 E 5 ASN A 413 ARG A 419 -1 O ILE A 414 N LEU A 333 SHEET 1 F 2 THR A 303 ARG A 304 0 SHEET 2 F 2 GLU A 322 ILE A 322A-1 O GLU A 322 N ARG A 304 SHEET 1 G 2 ILE A 307 ILE A 309 0 SHEET 2 G 2 ILE E 215 TYR E 217 1 O HIS E 216 N ILE A 309 SHEET 1 H 2 HIS A 374 CYS A 378 0 SHEET 2 H 2 GLU A 381 CYS A 385 -1 O PHE A 383 N PHE A 376 SHEET 1 I 3 LYS B 2 LYS B 7 0 SHEET 2 I 3 GLU B 92 ALA B 102 1 O LEU B 96 N GLY B 6 SHEET 3 I 3 THR B 81 ILE B 83 -1 N TYR B 82 O VAL B 93 SHEET 1 J 4 LYS B 2 LYS B 7 0 SHEET 2 J 4 GLU B 92 ALA B 102 1 O LEU B 96 N GLY B 6 SHEET 3 J 4 LEU B 114 GLU B 119 -1 O GLU B 119 N GLY B 99 SHEET 4 J 4 THR B 143 VAL B 146 -1 O LEU B 144 N LEU B 116 SHEET 1 K 2 VAL B 12 LEU B 14 0 SHEET 2 K 2 LEU B 69 ILE B 71 -1 O ILE B 71 N VAL B 12 SHEET 1 L 2 HIS B 27 LYS B 29 0 SHEET 2 L 2 LYS B 35 GLY B 38 -1 O ILE B 36 N TRP B 28 SHEET 1 M 3 HIS B 107 LEU B 108 0 SHEET 2 M 3 ILE B 172 VAL B 176 1 N VAL B 175 O LEU B 108 SHEET 3 M 3 GLY B 155 TRP B 157 -1 N GLY B 155 O ILE B 174 SHEET 1 N 2 GLN B 129 CYS B 130 0 SHEET 2 N 2 ILE B 138 GLN B 139 -1 O ILE B 138 N CYS B 130 SHEET 1 O 2 THR B 160 LEU B 162 0 SHEET 2 O 2 LYS B 167 GLU B 169 -1 O VAL B 168 N VAL B 161 SHEET 1 P 4 THR C 5 SER C 7 0 SHEET 2 P 4 VAL C 19 ARG C 24 -1 O ARG C 24 N THR C 5 SHEET 3 P 4 GLU C 70 ILE C 75 -1 O LEU C 73 N ILE C 21 SHEET 4 P 4 PHE C 62 SER C 67 -1 N SER C 63 O THR C 74 SHEET 1 Q 6 THR C 10 ALA C 13 0 SHEET 2 Q 6 THR C 102 ILE C 106 1 N GLU C 105 O LEU C 11 SHEET 3 Q 6 THR C 85 GLN C 89 -1 N TYR C 86 O THR C 102 SHEET 4 Q 6 ALA C 34 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 Q 6 LYS C 45 TYR C 49 -1 O LYS C 45 N GLN C 37 SHEET 6 Q 6 SER C 53 LEU C 54 -1 O SER C 53 N TYR C 49 SHEET 1 R 3 VAL C 115 PHE C 118 0 SHEET 2 R 3 VAL C 133 PHE C 139 -1 O VAL C 133 N PHE C 118 SHEET 3 R 3 TYR C 173 LEU C 175 -1 O LEU C 175 N LEU C 136 SHEET 1 S 2 THR C 129 ALA C 130 0 SHEET 2 S 2 LEU C 181 SER C 182 -1 O LEU C 181 N ALA C 130 SHEET 1 T 2 LEU D 4 GLN D 6 0 SHEET 2 T 2 CYS D 22 ALA D 24 -1 O LYS D 23 N VAL D 5 SHEET 1 U 6 GLU D 10 LYS D 12 0 SHEET 2 U 6 LEU D 108 VAL D 111 1 O THR D 110 N LYS D 12 SHEET 3 U 6 ALA D 88 ALA D 93 -1 N ALA D 88 O VAL D 109 SHEET 4 U 6 ASN D 35 GLN D 39 -1 N VAL D 37 O TYR D 91 SHEET 5 U 6 LEU D 45 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 U 6 ALA D 57 TYR D 59 -1 O HIS D 58 N GLY D 50 SHEET 1 V 3 VAL D 18 VAL D 20 0 SHEET 2 V 3 THR D 77 LEU D 82 -1 O LEU D 82 N VAL D 18 SHEET 3 V 3 VAL D 67 ASP D 72 -1 N ASP D 72 O THR D 77 SHEET 1 W 3 LEU D 138 CYS D 140 0 SHEET 2 W 3 SER D 180 VAL D 182 -1 O VAL D 182 N LEU D 138 SHEET 3 W 3 HIS D 164 THR D 165 -1 N HIS D 164 O VAL D 181 SHEET 1 X 2 VAL D 152 TRP D 154 0 SHEET 2 X 2 CYS D 196 VAL D 198 -1 O ASN D 197 N SER D 153 SHEET 1 Y 2 VAL D 169 LEU D 170 0 SHEET 2 Y 2 TYR D 176 SER D 177 -1 O SER D 177 N VAL D 169 SHEET 1 Z 4 VAL E 200 THR E 202 0 SHEET 2 Z 4 VAL E 120 LEU E 122 -1 N LYS E 121 O ILE E 201 SHEET 3 Z 4 LYS E 432 MET E 434 -1 O LYS E 432 N LEU E 122 SHEET 4 Z 4 ILE E 423 ASN E 425 -1 N ILE E 424 O ALA E 433 SHEET 1 AA 3 VAL E 242 VAL E 245 0 SHEET 2 AA 3 PHE E 223 CYS E 228 -1 N LYS E 227 O SER E 243 SHEET 3 AA 3 TYR E 486 LYS E 490 -1 O VAL E 489 N ALA E 224 SHEET 1 AB 5 LEU E 259 LEU E 261 0 SHEET 2 AB 5 ILE E 443 ARG E 456 -1 O GLY E 451 N LEU E 260 SHEET 3 AB 5 ILE E 284 ARG E 298 -1 N VAL E 292 O ILE E 449 SHEET 4 AB 5 GLU E 466 PRO E 470 0 SHEET 5 AB 5 ILE E 359 PHE E 361 1 N ILE E 360 O PHE E 468 SHEET 1 AC 5 VAL E 271 SER E 274 0 SHEET 2 AC 5 ILE E 284 ARG E 298 -1 O ILE E 285 N ARG E 273 SHEET 3 AC 5 ILE E 443 ARG E 456 -1 O ILE E 449 N VAL E 292 SHEET 4 AC 5 GLN E 328 LEU E 333 0 SHEET 5 AC 5 ILE E 414 ARG E 419 -1 O ILE E 414 N LEU E 333 SHEET 1 AD 2 THR E 303 ARG E 304 0 SHEET 2 AD 2 GLU E 322 ILE E 322A-1 O GLU E 322 N ARG E 304 SHEET 1 AE 2 HIS E 374 CYS E 378 0 SHEET 2 AE 2 GLU E 381 CYS E 385 -1 O PHE E 383 N PHE E 376 SHEET 1 AF 3 LYS F 2 LYS F 7 0 SHEET 2 AF 3 GLU F 92 ALA F 102 1 O LEU F 96 N GLY F 6 SHEET 3 AF 3 THR F 81 ILE F 83 -1 N TYR F 82 O VAL F 93 SHEET 1 AG 4 LYS F 2 LYS F 7 0 SHEET 2 AG 4 GLU F 92 ALA F 102 1 O LEU F 96 N GLY F 6 SHEET 3 AG 4 LEU F 114 GLU F 119 -1 O GLU F 119 N GLY F 99 SHEET 4 AG 4 THR F 143 VAL F 146 -1 O LEU F 144 N LEU F 116 SHEET 1 AH 2 VAL F 12 LEU F 14 0 SHEET 2 AH 2 LEU F 69 ILE F 71 -1 O ILE F 71 N VAL F 12 SHEET 1 AI 2 HIS F 27 LYS F 29 0 SHEET 2 AI 2 LYS F 35 GLY F 38 -1 O ILE F 36 N TRP F 28 SHEET 1 AJ 3 HIS F 107 LEU F 108 0 SHEET 2 AJ 3 ILE F 172 VAL F 176 1 N VAL F 175 O LEU F 108 SHEET 3 AJ 3 GLY F 155 TRP F 157 -1 N GLY F 155 O ILE F 174 SHEET 1 AK 2 GLN F 129 CYS F 130 0 SHEET 2 AK 2 ILE F 138 GLN F 139 -1 O ILE F 138 N CYS F 130 SHEET 1 AL 2 THR F 160 LEU F 162 0 SHEET 2 AL 2 LYS F 167 GLU F 169 -1 O VAL F 168 N VAL F 161 SHEET 1 AM 4 THR G 5 SER G 7 0 SHEET 2 AM 4 VAL G 19 ARG G 24 -1 O ARG G 24 N THR G 5 SHEET 3 AM 4 GLU G 70 ILE G 75 -1 O LEU G 73 N ILE G 21 SHEET 4 AM 4 PHE G 62 SER G 67 -1 N SER G 63 O THR G 74 SHEET 1 AN 6 THR G 10 ALA G 13 0 SHEET 2 AN 6 THR G 102 ILE G 106 1 N GLU G 105 O LEU G 11 SHEET 3 AN 6 THR G 85 GLN G 89 -1 N TYR G 86 O THR G 102 SHEET 4 AN 6 ALA G 34 GLN G 38 -1 N TYR G 36 O TYR G 87 SHEET 5 AN 6 LYS G 45 TYR G 49 -1 O LYS G 45 N GLN G 37 SHEET 6 AN 6 SER G 53 LEU G 54 -1 O SER G 53 N TYR G 49 SHEET 1 AO 3 VAL G 115 PHE G 118 0 SHEET 2 AO 3 VAL G 133 PHE G 139 -1 O VAL G 133 N PHE G 118 SHEET 3 AO 3 TYR G 173 LEU G 175 -1 O LEU G 175 N LEU G 136 SHEET 1 AP 2 THR G 129 ALA G 130 0 SHEET 2 AP 2 LEU G 181 SER G 182 -1 O LEU G 181 N ALA G 130 SHEET 1 AQ 2 LEU H 4 GLN H 6 0 SHEET 2 AQ 2 CYS H 22 ALA H 24 -1 O LYS H 23 N VAL H 5 SHEET 1 AR 6 GLU H 10 LYS H 12 0 SHEET 2 AR 6 LEU H 108 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AR 6 ALA H 88 ALA H 93 -1 N ALA H 88 O VAL H 109 SHEET 4 AR 6 ASN H 35 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AR 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AR 6 ALA H 57 TYR H 59 -1 O HIS H 58 N GLY H 50 SHEET 1 AS 3 VAL H 18 VAL H 20 0 SHEET 2 AS 3 THR H 77 LEU H 82 -1 O LEU H 82 N VAL H 18 SHEET 3 AS 3 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AT 3 LEU H 138 CYS H 140 0 SHEET 2 AT 3 SER H 180 VAL H 182 -1 O VAL H 182 N LEU H 138 SHEET 3 AT 3 HIS H 164 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AU 2 VAL H 152 TRP H 154 0 SHEET 2 AU 2 CYS H 196 VAL H 198 -1 O ASN H 197 N SER H 153 SHEET 1 AV 2 VAL H 169 LEU H 170 0 SHEET 2 AV 2 TYR H 176 SER H 177 -1 O SER H 177 N VAL H 169 SSBOND 1 CYS A 119 CYS A 205 1555 1555 2.03 SSBOND 2 CYS A 218 CYS A 247 1555 1555 2.04 SSBOND 3 CYS A 228 CYS A 239 1555 1555 2.04 SSBOND 4 CYS A 296 CYS A 331 1555 1555 2.03 SSBOND 5 CYS A 378 CYS A 445 1555 1555 2.03 SSBOND 6 CYS A 385 CYS A 418 1555 1555 2.03 SSBOND 7 CYS B 16 CYS B 84 1555 1555 2.04 SSBOND 8 CYS B 130 CYS B 159 1555 1555 2.04 SSBOND 9 CYS C 23 CYS C 88 1555 1555 2.04 SSBOND 10 CYS C 134 CYS C 194 1555 1555 2.03 SSBOND 11 CYS D 22 CYS D 92 1555 1555 2.04 SSBOND 12 CYS D 140 CYS D 196 1555 1555 2.03 SSBOND 13 CYS E 119 CYS E 205 1555 1555 2.03 SSBOND 14 CYS E 218 CYS E 247 1555 1555 2.04 SSBOND 15 CYS E 228 CYS E 239 1555 1555 2.04 SSBOND 16 CYS E 296 CYS E 331 1555 1555 2.03 SSBOND 17 CYS E 378 CYS E 445 1555 1555 2.04 SSBOND 18 CYS E 385 CYS E 418 1555 1555 2.03 SSBOND 19 CYS F 16 CYS F 84 1555 1555 2.04 SSBOND 20 CYS F 130 CYS F 159 1555 1555 2.04 SSBOND 21 CYS G 23 CYS G 88 1555 1555 2.04 SSBOND 22 CYS G 134 CYS G 194 1555 1555 2.04 SSBOND 23 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 24 CYS H 140 CYS H 196 1555 1555 2.03 LINK ND2 ASN A 234 C1 NAG A 734 1555 1555 1.44 LINK ND2 ASN A 241 C1 NAG A 741 1555 1555 1.45 LINK ND2 ASN A 262 C1 NAG A 762 1555 1555 1.44 LINK ND2 ASN A 276 C1 NAG A 776 1555 1555 1.44 LINK ND2 ASN A 289 C1 NAG A 789 1555 1555 1.44 LINK ND2 ASN A 295 C1 NAG A 795 1555 1555 1.44 LINK ND2 ASN A 301 C1 NAG A 801 1555 1555 1.43 LINK ND2 ASN A 332 C1 NAG A 832 1555 1555 1.44 LINK ND2 ASN A 356 C1 NAG A 856 1555 1555 1.44 LINK ND2 ASN A 362 C1 NAG A 862 1555 1555 1.46 LINK ND2 ASN A 386 C1 NAG A 886 1555 1555 1.44 LINK ND2 ASN A 394 C1 NAG A 894 1555 1555 1.44 LINK ND2 ASN A 400 C1 NAG A 900 1555 1555 1.44 LINK ND2 ASN A 413 C1 NAG A 913 1555 1555 1.45 LINK ND2 ASN A 448 C1 NAG A 948 1555 1555 1.44 LINK ND2 ASN A 463 C1 NAG A 963 1555 1555 1.44 LINK C ASP D 99 N TYS D 100 1555 1555 1.33 LINK C ASP D 100B N TYS D 100C 1555 1555 1.33 LINK N ALA D 100D C TYS D 100C 1555 1555 1.33 LINK N ASN D 100A C TYS D 100 1555 1555 1.33 LINK ND2 ASN E 234 C1 NAG E 734 1555 1555 1.44 LINK ND2 ASN E 241 C1 NAG E 741 1555 1555 1.44 LINK ND2 ASN E 262 C1 NAG E 762 1555 1555 1.44 LINK ND2 ASN E 276 C1 NAG E 776 1555 1555 1.45 LINK ND2 ASN E 289 C1 NAG E 789 1555 1555 1.44 LINK ND2 ASN E 295 C1 NAG E 795 1555 1555 1.44 LINK ND2 ASN E 301 C1 NAG E 801 1555 1555 1.44 LINK ND2 ASN E 332 C1 NAG E 832 1555 1555 1.43 LINK ND2 ASN E 356 C1 NAG E 856 1555 1555 1.44 LINK ND2 ASN E 362 C1 NAG E 862 1555 1555 1.45 LINK ND2 ASN E 386 C1 NAG E 886 1555 1555 1.43 LINK ND2 ASN E 394 C1 NAG E 894 1555 1555 1.45 LINK ND2 ASN E 413 C1 NAG E 913 1555 1555 1.45 LINK ND2 ASN E 448 C1 NAG E 948 1555 1555 1.44 LINK ND2 ASN E 463 C1 NAG E 963 1555 1555 1.44 LINK C ASP H 99 N TYS H 100 1555 1555 1.33 LINK N ALA H 100D C TYS H 100C 1555 1555 1.33 LINK C ASP H 100B N TYS H 100C 1555 1555 1.33 LINK N ASN H 100A C TYS H 100 1555 1555 1.33 CISPEP 1 SER C 7 PRO C 8 0 -4.11 CISPEP 2 SER C 94 PRO C 95 0 -2.38 CISPEP 3 TYR C 140 PRO C 141 0 1.74 CISPEP 4 PHE D 146 PRO D 147 0 -3.80 CISPEP 5 GLU D 148 PRO D 149 0 -1.76 CISPEP 6 SER G 7 PRO G 8 0 -4.44 CISPEP 7 SER G 94 PRO G 95 0 -2.40 CISPEP 8 TYR G 140 PRO G 141 0 0.79 CISPEP 9 PHE H 146 PRO H 147 0 -3.53 CISPEP 10 GLU H 148 PRO H 149 0 -3.26 CRYST1 109.600 53.021 225.326 90.00 104.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009124 0.000000 0.002383 0.00000 SCALE2 0.000000 0.018860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004587 0.00000