PDB Short entry for 2QJB HEADER CYTOKINE/RECEPTOR 06-JUL-07 2QJB TITLE CRYSTAL STRUCTURE ANALYSIS OF BMP-2 IN COMPLEX WITH BMPR-IA VARIANT TITLE 2 IA/IB COMPND MOL_ID: 1; COMPND 2 MOLECULE: BONE MORPHOGENETIC PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MATURE PART (RESIDUES 283-396); COMPND 5 SYNONYM: BMP-2, BMP-2A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BONE MORPHOGENETIC PROTEIN RECEPTOR TYPE IA; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: EXTRACELLULAR DOMAIN (RESIDUES 24-152); COMPND 11 SYNONYM: SERINE/THREONINE-PROTEIN KINASE RECEPTOR R5, SKR5, ACTIVIN COMPND 12 RECEPTOR-LIKE KINASE 3, ALK-3, CD292 ANTIGEN; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMP2, BMP2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: BMPR1A, ACVRLK3, ALK3; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET32A KEYWDS LIGAND-RECEPTOR COMPLEX, CHONDROGENESIS, CLEAVAGE ON PAIR OF BASIC KEYWDS 2 RESIDUES, CYTOKINE, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, KEYWDS 3 GLYCOPROTEIN, GROWTH FACTOR, OSTEOGENESIS, ATP-BINDING, DISEASE KEYWDS 4 MUTATION, KINASE, MAGNESIUM, MANGANESE, MEMBRANE, METAL-BINDING, KEYWDS 5 NUCLEOTIDE-BINDING, PHOSPHORYLATION, SERINE/THREONINE-PROTEIN KEYWDS 6 KINASE, TRANSFERASE, TRANSMEMBRANE, CYTOKINE-RECEPTOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.KOTZSCH,T.D.MUELLER REVDAT 5 30-AUG-23 2QJB 1 REMARK REVDAT 4 20-OCT-21 2QJB 1 SEQADV REVDAT 3 13-JUL-11 2QJB 1 VERSN REVDAT 2 24-FEB-09 2QJB 1 VERSN REVDAT 1 15-JAN-08 2QJB 0 JRNL AUTH A.KOTZSCH,J.NICKEL,A.SEHER,K.HEINECKE,L.VAN GEERSDAELE, JRNL AUTH 2 T.HERRMANN,W.SEBALD,T.D.MUELLER JRNL TITL STRUCTURE ANALYSIS OF BONE MORPHOGENETIC PROTEIN-2 TYPE I JRNL TITL 2 RECEPTOR COMPLEXES REVEALS A MECHANISM OF RECEPTOR JRNL TITL 3 INACTIVATION IN JUVENILE POLYPOSIS SYNDROME. JRNL REF J.BIOL.CHEM. V. 283 5876 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18160401 JRNL DOI 10.1074/JBC.M706029200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1097 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1496 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2972 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : -1.10000 REMARK 3 B33 (A**2) : 1.65000 REMARK 3 B12 (A**2) : -0.55000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.961 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3067 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4195 ; 1.567 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 378 ; 6.772 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;39.720 ;24.930 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;20.577 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.482 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2368 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1435 ; 0.275 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2099 ; 0.334 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 208 ; 0.210 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.345 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.396 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1951 ; 0.729 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3126 ; 1.338 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1234 ; 1.634 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1069 ; 2.500 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 92 REMARK 3 RESIDUE RANGE : A 98 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4132 -54.3152 -23.2660 REMARK 3 T TENSOR REMARK 3 T11: -0.4398 T22: -0.1681 REMARK 3 T33: -0.1687 T12: -0.0524 REMARK 3 T13: 0.0044 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.4426 L22: 1.1993 REMARK 3 L33: 8.6375 L12: 0.2181 REMARK 3 L13: 1.2386 L23: -0.3769 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0872 S13: 0.2299 REMARK 3 S21: 0.1244 S22: -0.0878 S23: -0.1237 REMARK 3 S31: 0.0761 S32: 0.3617 S33: 0.0937 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 92 REMARK 3 RESIDUE RANGE : B 98 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4553 -56.9800 -36.6947 REMARK 3 T TENSOR REMARK 3 T11: -0.3829 T22: -0.1775 REMARK 3 T33: -0.1924 T12: -0.0668 REMARK 3 T13: 0.0162 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.0445 L22: 1.9499 REMARK 3 L33: 7.8771 L12: 0.4111 REMARK 3 L13: 0.8160 L23: 0.3848 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: 0.4241 S13: 0.3019 REMARK 3 S21: -0.2660 S22: 0.1719 S23: -0.1402 REMARK 3 S31: 0.2307 S32: 0.2204 S33: -0.1231 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 32 C 88 REMARK 3 RESIDUE RANGE : C 96 C 116 REMARK 3 ORIGIN FOR THE GROUP (A): 56.6920 -47.5659 -46.4241 REMARK 3 T TENSOR REMARK 3 T11: -0.3194 T22: 0.2849 REMARK 3 T33: -0.0687 T12: -0.1059 REMARK 3 T13: 0.0557 T23: 0.2624 REMARK 3 L TENSOR REMARK 3 L11: 9.2046 L22: 6.4524 REMARK 3 L33: 7.0362 L12: -1.9361 REMARK 3 L13: 2.9533 L23: -0.1368 REMARK 3 S TENSOR REMARK 3 S11: -0.3327 S12: 1.4926 S13: 1.0843 REMARK 3 S21: -0.3342 S22: 0.2300 S23: 0.1950 REMARK 3 S31: -0.5067 S32: 0.0483 S33: 0.1028 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 32 D 121 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4883 -56.8206 -12.6529 REMARK 3 T TENSOR REMARK 3 T11: -0.2704 T22: -0.2346 REMARK 3 T33: -0.1748 T12: -0.1153 REMARK 3 T13: 0.1047 T23: -0.0550 REMARK 3 L TENSOR REMARK 3 L11: 2.9390 L22: 8.4533 REMARK 3 L33: 6.3639 L12: -0.0126 REMARK 3 L13: 0.3467 L23: 2.8347 REMARK 3 S TENSOR REMARK 3 S11: 0.0798 S12: -0.1074 S13: 0.3114 REMARK 3 S21: 0.3120 S22: 0.0346 S23: 0.3527 REMARK 3 S31: -0.1902 S32: -0.2032 S33: -0.1144 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : VARIMAX REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21360 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 31.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.230 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.32 REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : 0.56400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1REW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M K NA PHOSPHATE, 25% ETHYLENE REMARK 280 GLYCOL, PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.67467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.33733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.00600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.66867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.34333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7229 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 ALA A 0 REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 HIS A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 LEU A 10 REMARK 465 LYS A 11 REMARK 465 MET B -1 REMARK 465 ALA B 0 REMARK 465 GLN B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 HIS B 4 REMARK 465 LYS B 5 REMARK 465 GLN B 6 REMARK 465 ARG B 7 REMARK 465 LYS B 8 REMARK 465 ARG B 9 REMARK 465 LEU B 10 REMARK 465 GLY C -5 REMARK 465 SER C -4 REMARK 465 GLY C -3 REMARK 465 ALA C -2 REMARK 465 MET C -1 REMARK 465 ALA C 0 REMARK 465 GLN C 1 REMARK 465 ASN C 2 REMARK 465 LEU C 3 REMARK 465 ASP C 4 REMARK 465 SER C 5 REMARK 465 MET C 6 REMARK 465 LEU C 7 REMARK 465 HIS C 8 REMARK 465 GLY C 9 REMARK 465 THR C 10 REMARK 465 GLY C 11 REMARK 465 MET C 12 REMARK 465 LYS C 13 REMARK 465 SER C 14 REMARK 465 ASP C 15 REMARK 465 SER C 16 REMARK 465 ASP C 17 REMARK 465 GLN C 18 REMARK 465 LYS C 19 REMARK 465 LYS C 20 REMARK 465 SER C 21 REMARK 465 GLU C 22 REMARK 465 ASN C 23 REMARK 465 GLY C 24 REMARK 465 VAL C 25 REMARK 465 THR C 26 REMARK 465 LEU C 27 REMARK 465 ALA C 28 REMARK 465 PRO C 29 REMARK 465 GLU C 30 REMARK 465 ASP C 31 REMARK 465 PRO C 117 REMARK 465 VAL C 118 REMARK 465 VAL C 119 REMARK 465 ILE C 120 REMARK 465 GLY C 121 REMARK 465 PRO C 122 REMARK 465 PHE C 123 REMARK 465 PHE C 124 REMARK 465 ASP C 125 REMARK 465 GLY C 126 REMARK 465 SER C 127 REMARK 465 ILE C 128 REMARK 465 ARG C 129 REMARK 465 GLY D -5 REMARK 465 SER D -4 REMARK 465 GLY D -3 REMARK 465 ALA D -2 REMARK 465 MET D -1 REMARK 465 ALA D 0 REMARK 465 GLN D 1 REMARK 465 ASN D 2 REMARK 465 LEU D 3 REMARK 465 ASP D 4 REMARK 465 SER D 5 REMARK 465 MET D 6 REMARK 465 LEU D 7 REMARK 465 HIS D 8 REMARK 465 GLY D 9 REMARK 465 THR D 10 REMARK 465 GLY D 11 REMARK 465 MET D 12 REMARK 465 LYS D 13 REMARK 465 SER D 14 REMARK 465 ASP D 15 REMARK 465 SER D 16 REMARK 465 ASP D 17 REMARK 465 GLN D 18 REMARK 465 LYS D 19 REMARK 465 LYS D 20 REMARK 465 SER D 21 REMARK 465 GLU D 22 REMARK 465 ASN D 23 REMARK 465 GLY D 24 REMARK 465 VAL D 25 REMARK 465 THR D 26 REMARK 465 LEU D 27 REMARK 465 ALA D 28 REMARK 465 PRO D 29 REMARK 465 GLU D 30 REMARK 465 ASP D 31 REMARK 465 PRO D 122 REMARK 465 PHE D 123 REMARK 465 PHE D 124 REMARK 465 ASP D 125 REMARK 465 GLY D 126 REMARK 465 SER D 127 REMARK 465 ILE D 128 REMARK 465 ARG D 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 11 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 29 -4.53 -59.36 REMARK 500 ALA A 34 139.56 172.23 REMARK 500 PHE A 41 165.12 63.52 REMARK 500 ASN A 56 61.40 36.60 REMARK 500 GLU A 94 -28.29 -29.73 REMARK 500 GLU A 96 95.61 54.95 REMARK 500 LYS A 97 127.83 174.62 REMARK 500 VAL A 98 113.85 -13.34 REMARK 500 ASN B 29 -8.47 -59.51 REMARK 500 PHE B 41 170.70 60.81 REMARK 500 GLU B 94 -68.17 -24.52 REMARK 500 GLU B 96 42.58 35.72 REMARK 500 GLU C 70 123.28 -36.24 REMARK 500 ILE C 92 83.71 -154.40 REMARK 500 PRO C 93 -160.75 -72.23 REMARK 500 ASP D 89 -177.82 69.91 REMARK 500 VAL D 119 131.92 -32.32 REMARK 500 ILE D 120 144.87 168.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1REW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BMP-2 IN COMPLEX WITH BMPR-IA AT HIGH REMARK 900 RESOLUTION. REMARK 900 RELATED ID: 1ES7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BMP-2 IN COMPLEX WITH BMPR-IA. REMARK 900 RELATED ID: 3BMP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BMP-2. REMARK 900 RELATED ID: 2QJA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF BMP-2 IN COMPLEX WITH BMPR-IA VARIANT REMARK 900 B12 REMARK 900 RELATED ID: 2QJ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF BMP-2 IN COMPLEX WITH BMPR-IA VARIANT REMARK 900 B1 DBREF 2QJB A 1 114 UNP P12643 BMP2_HUMAN 283 396 DBREF 2QJB B 1 114 UNP P12643 BMP2_HUMAN 283 396 DBREF 2QJB C 1 129 UNP P36894 BMR1A_HUMAN 24 152 DBREF 2QJB D 1 129 UNP P36894 BMR1A_HUMAN 24 152 SEQADV 2QJB MET A -1 UNP P12643 EXPRESSION TAG SEQADV 2QJB ALA A 0 UNP P12643 EXPRESSION TAG SEQADV 2QJB MET B -1 UNP P12643 EXPRESSION TAG SEQADV 2QJB ALA B 0 UNP P12643 EXPRESSION TAG SEQADV 2QJB GLY C -5 UNP P36894 EXPRESSION TAG SEQADV 2QJB SER C -4 UNP P36894 EXPRESSION TAG SEQADV 2QJB GLY C -3 UNP P36894 EXPRESSION TAG SEQADV 2QJB ALA C -2 UNP P36894 EXPRESSION TAG SEQADV 2QJB MET C -1 UNP P36894 EXPRESSION TAG SEQADV 2QJB ALA C 0 UNP P36894 EXPRESSION TAG SEQADV 2QJB HIS C 42 UNP P36894 GLY 65 ENGINEERED MUTATION SEQADV 2QJB GLU C 46 UNP P36894 ASP 69 ENGINEERED MUTATION SEQADV 2QJB THR C 61 UNP P36894 ALA 84 ENGINEERED MUTATION SEQADV 2QJB MET C 62 UNP P36894 ILE 85 ENGINEERED MUTATION SEQADV 2QJB THR C 74 UNP P36894 ALA 97 ENGINEERED MUTATION SEQADV 2QJB LEU C 78 UNP P36894 MET 101 ENGINEERED MUTATION SEQADV 2QJB GLY C 79 UNP P36894 LYS 102 ENGINEERED MUTATION SEQADV 2QJB LEU C 80 UNP P36894 TYR 103 ENGINEERED MUTATION SEQADV 2QJB ARG C 88 UNP P36894 LYS 111 ENGINEERED MUTATION SEQADV 2QJB THR C 90 UNP P36894 SER 113 ENGINEERED MUTATION SEQADV 2QJB ILE C 92 UNP P36894 LYS 115 ENGINEERED MUTATION SEQADV 2QJB PRO C 93 UNP P36894 ALA 116 ENGINEERED MUTATION SEQADV 2QJB HIS C 94 UNP P36894 GLN 117 ENGINEERED MUTATION SEQADV 2QJB GLN C 95 UNP P36894 LEU 118 ENGINEERED MUTATION SEQADV 2QJB SER C 98 UNP P36894 THR 121 ENGINEERED MUTATION SEQADV 2QJB GLY D -5 UNP P36894 EXPRESSION TAG SEQADV 2QJB SER D -4 UNP P36894 EXPRESSION TAG SEQADV 2QJB GLY D -3 UNP P36894 EXPRESSION TAG SEQADV 2QJB ALA D -2 UNP P36894 EXPRESSION TAG SEQADV 2QJB MET D -1 UNP P36894 EXPRESSION TAG SEQADV 2QJB ALA D 0 UNP P36894 EXPRESSION TAG SEQADV 2QJB HIS D 42 UNP P36894 GLY 65 ENGINEERED MUTATION SEQADV 2QJB GLU D 46 UNP P36894 ASP 69 ENGINEERED MUTATION SEQADV 2QJB THR D 61 UNP P36894 ALA 84 ENGINEERED MUTATION SEQADV 2QJB MET D 62 UNP P36894 ILE 85 ENGINEERED MUTATION SEQADV 2QJB THR D 74 UNP P36894 ALA 97 ENGINEERED MUTATION SEQADV 2QJB LEU D 78 UNP P36894 MET 101 ENGINEERED MUTATION SEQADV 2QJB GLY D 79 UNP P36894 LYS 102 ENGINEERED MUTATION SEQADV 2QJB LEU D 80 UNP P36894 TYR 103 ENGINEERED MUTATION SEQADV 2QJB ARG D 88 UNP P36894 LYS 111 ENGINEERED MUTATION SEQADV 2QJB THR D 90 UNP P36894 SER 113 ENGINEERED MUTATION SEQADV 2QJB ILE D 92 UNP P36894 LYS 115 ENGINEERED MUTATION SEQADV 2QJB PRO D 93 UNP P36894 ALA 116 ENGINEERED MUTATION SEQADV 2QJB HIS D 94 UNP P36894 GLN 117 ENGINEERED MUTATION SEQADV 2QJB GLN D 95 UNP P36894 LEU 118 ENGINEERED MUTATION SEQADV 2QJB SER D 98 UNP P36894 THR 121 ENGINEERED MUTATION SEQRES 1 A 116 MET ALA GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SEQRES 2 A 116 SER SER CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER SEQRES 3 A 116 ASP VAL GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY SEQRES 4 A 116 TYR HIS ALA PHE TYR CYS HIS GLY GLU CYS PRO PHE PRO SEQRES 5 A 116 LEU ALA ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL SEQRES 6 A 116 GLN THR LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS SEQRES 7 A 116 ALA CYS CYS VAL PRO THR GLU LEU SER ALA ILE SER MET SEQRES 8 A 116 LEU TYR LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN SEQRES 9 A 116 TYR GLN ASP MET VAL VAL GLU GLY CYS GLY CYS ARG SEQRES 1 B 116 MET ALA GLN ALA LYS HIS LYS GLN ARG LYS ARG LEU LYS SEQRES 2 B 116 SER SER CYS LYS ARG HIS PRO LEU TYR VAL ASP PHE SER SEQRES 3 B 116 ASP VAL GLY TRP ASN ASP TRP ILE VAL ALA PRO PRO GLY SEQRES 4 B 116 TYR HIS ALA PHE TYR CYS HIS GLY GLU CYS PRO PHE PRO SEQRES 5 B 116 LEU ALA ASP HIS LEU ASN SER THR ASN HIS ALA ILE VAL SEQRES 6 B 116 GLN THR LEU VAL ASN SER VAL ASN SER LYS ILE PRO LYS SEQRES 7 B 116 ALA CYS CYS VAL PRO THR GLU LEU SER ALA ILE SER MET SEQRES 8 B 116 LEU TYR LEU ASP GLU ASN GLU LYS VAL VAL LEU LYS ASN SEQRES 9 B 116 TYR GLN ASP MET VAL VAL GLU GLY CYS GLY CYS ARG SEQRES 1 C 135 GLY SER GLY ALA MET ALA GLN ASN LEU ASP SER MET LEU SEQRES 2 C 135 HIS GLY THR GLY MET LYS SER ASP SER ASP GLN LYS LYS SEQRES 3 C 135 SER GLU ASN GLY VAL THR LEU ALA PRO GLU ASP THR LEU SEQRES 4 C 135 PRO PHE LEU LYS CYS TYR CYS SER HIS HIS CYS PRO GLU SEQRES 5 C 135 ASP ALA ILE ASN ASN THR CYS ILE THR ASN GLY HIS CYS SEQRES 6 C 135 PHE THR MET ILE GLU GLU ASP ASP GLN GLY GLU THR THR SEQRES 7 C 135 LEU THR SER GLY CYS LEU GLY LEU GLU GLY SER ASP PHE SEQRES 8 C 135 GLN CYS ARG ASP THR PRO ILE PRO HIS GLN ARG ARG SER SEQRES 9 C 135 ILE GLU CYS CYS ARG THR ASN LEU CYS ASN GLN TYR LEU SEQRES 10 C 135 GLN PRO THR LEU PRO PRO VAL VAL ILE GLY PRO PHE PHE SEQRES 11 C 135 ASP GLY SER ILE ARG SEQRES 1 D 135 GLY SER GLY ALA MET ALA GLN ASN LEU ASP SER MET LEU SEQRES 2 D 135 HIS GLY THR GLY MET LYS SER ASP SER ASP GLN LYS LYS SEQRES 3 D 135 SER GLU ASN GLY VAL THR LEU ALA PRO GLU ASP THR LEU SEQRES 4 D 135 PRO PHE LEU LYS CYS TYR CYS SER HIS HIS CYS PRO GLU SEQRES 5 D 135 ASP ALA ILE ASN ASN THR CYS ILE THR ASN GLY HIS CYS SEQRES 6 D 135 PHE THR MET ILE GLU GLU ASP ASP GLN GLY GLU THR THR SEQRES 7 D 135 LEU THR SER GLY CYS LEU GLY LEU GLU GLY SER ASP PHE SEQRES 8 D 135 GLN CYS ARG ASP THR PRO ILE PRO HIS GLN ARG ARG SER SEQRES 9 D 135 ILE GLU CYS CYS ARG THR ASN LEU CYS ASN GLN TYR LEU SEQRES 10 D 135 GLN PRO THR LEU PRO PRO VAL VAL ILE GLY PRO PHE PHE SEQRES 11 D 135 ASP GLY SER ILE ARG HET CL B 1 1 HETNAM CL CHLORIDE ION FORMUL 5 CL CL 1- FORMUL 6 HOH *79(H2 O) HELIX 1 1 ALA A 52 ASN A 56 5 5 HELIX 2 2 THR A 58 ASN A 71 1 14 HELIX 3 3 PHE B 23 GLY B 27 1 5 HELIX 4 4 ALA B 52 ASN B 56 5 5 HELIX 5 5 THR B 58 SER B 69 1 12 HELIX 6 6 GLY C 82 CYS C 87 1 6 HELIX 7 7 LEU C 106 TYR C 110 5 5 HELIX 8 8 GLY D 82 ASP D 89 1 8 HELIX 9 9 LEU D 106 LEU D 111 5 6 SHEET 1 A 2 LYS A 15 HIS A 17 0 SHEET 2 A 2 TYR A 42 HIS A 44 -1 O TYR A 42 N HIS A 17 SHEET 1 B 2 TYR A 20 ASP A 22 0 SHEET 2 B 2 GLY A 37 HIS A 39 -1 O TYR A 38 N VAL A 21 SHEET 1 C 3 ILE A 32 ALA A 34 0 SHEET 2 C 3 CYS A 78 LEU A 92 -1 O LEU A 90 N VAL A 33 SHEET 3 C 3 VAL A 98 ARG A 114 -1 O GLY A 110 N THR A 82 SHEET 1 D 2 LYS B 15 HIS B 17 0 SHEET 2 D 2 TYR B 42 HIS B 44 -1 O TYR B 42 N HIS B 17 SHEET 1 E 2 TYR B 20 ASP B 22 0 SHEET 2 E 2 GLY B 37 HIS B 39 -1 O TYR B 38 N VAL B 21 SHEET 1 F 3 ILE B 32 ALA B 34 0 SHEET 2 F 3 CYS B 78 ASP B 93 -1 O LEU B 90 N ALA B 34 SHEET 3 F 3 LYS B 97 ARG B 114 -1 O TYR B 103 N ILE B 87 SHEET 1 G 2 LEU C 36 TYR C 39 0 SHEET 2 G 2 THR C 52 THR C 55 -1 O THR C 55 N LEU C 36 SHEET 1 H 3 THR C 71 LEU C 78 0 SHEET 2 H 3 HIS C 58 GLU C 65 -1 N MET C 62 O THR C 74 SHEET 3 H 3 ARG C 97 CYS C 102 -1 O CYS C 102 N CYS C 59 SHEET 1 I 2 LEU D 36 TYR D 39 0 SHEET 2 I 2 THR D 52 THR D 55 -1 O CYS D 53 N CYS D 38 SHEET 1 J 3 THR D 71 LEU D 78 0 SHEET 2 J 3 HIS D 58 GLU D 65 -1 N PHE D 60 O GLY D 76 SHEET 3 J 3 ARG D 97 CYS D 102 -1 O CYS D 102 N CYS D 59 SSBOND 1 CYS A 14 CYS A 79 1555 1555 2.03 SSBOND 2 CYS A 43 CYS A 111 1555 1555 2.05 SSBOND 3 CYS A 47 CYS A 113 1555 1555 2.03 SSBOND 4 CYS A 78 CYS B 78 1555 1555 2.04 SSBOND 5 CYS B 14 CYS B 79 1555 1555 2.05 SSBOND 6 CYS B 43 CYS B 111 1555 1555 2.02 SSBOND 7 CYS B 47 CYS B 113 1555 1555 2.05 SSBOND 8 CYS C 38 CYS C 59 1555 1555 1.98 SSBOND 9 CYS C 40 CYS C 44 1555 1555 2.05 SSBOND 10 CYS C 53 CYS C 77 1555 1555 2.06 SSBOND 11 CYS C 87 CYS C 101 1555 1555 2.05 SSBOND 12 CYS C 102 CYS C 107 1555 1555 2.03 SSBOND 13 CYS D 38 CYS D 59 1555 1555 2.02 SSBOND 14 CYS D 40 CYS D 44 1555 1555 2.07 SSBOND 15 CYS D 53 CYS D 77 1555 1555 2.09 SSBOND 16 CYS D 87 CYS D 101 1555 1555 2.07 SSBOND 17 CYS D 102 CYS D 107 1555 1555 2.02 CISPEP 1 ALA A 34 PRO A 35 0 0.97 CISPEP 2 PHE A 49 PRO A 50 0 3.17 CISPEP 3 ALA B 34 PRO B 35 0 -0.88 CISPEP 4 PHE B 49 PRO B 50 0 -6.61 CRYST1 104.175 104.175 100.012 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009599 0.005542 0.000000 0.00000 SCALE2 0.000000 0.011084 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009999 0.00000