PDB Short entry for 2QME HEADER SIGNALING PROTEIN/TRANSFERASE 16-JUL-07 2QME TITLE CRYSTAL STRUCTURE OF HUMAN RAC3 IN COMPLEX WITH CRIB DOMAIN OF HUMAN TITLE 2 P21-ACTIVATED KINASE 1 (PAK1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P21-RAC3; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CRIB DOMAIN OF THE SERINE/THREONINE-PROTEIN KINASE PAK 1; COMPND 8 CHAIN: I; COMPND 9 FRAGMENT: CRIB DOMAIN; COMPND 10 SYNONYM: P21-ACTIVATED KINASE 1, PAK-1, P65-PAK, ALPHA-PAK; COMPND 11 EC: 2.7.11.1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE WITH THE SEQUENCE OF THE CRIB SOURCE 14 DOMAIN OF HUMAN PAK1 PROTEIN KEYWDS GTPASE RAC3, SMALL GTP BINDING PROTEIN, P21 RAC, RAS-RELATED C3 KEYWDS 2 BOTULINUM TOXIN SUBSTRATE 3, SIGNALING PROTEIN, CRIB, KINASE, KEYWDS 3 STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, CELL KEYWDS 4 PROJECTION, GTP-BINDING, LIPOPROTEIN, MEMBRANE, METHYLATION, KEYWDS 5 NUCLEOTIDE-BINDING, PRENYLATION, ALLOSTERIC ENZYME, ATP-BINDING, KEYWDS 6 PHOSPHORYLATION, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, KEYWDS 7 APOPTOSIS, CELL JUNCTION, SIGNALING PROTEIN-TRANSFERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,X.YANG,J.M.ELKINS,N.BURGESS-BROWN,G.BUNKOCZI,M.SUNDSTROM, AUTHOR 2 C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,F.VON DELFT,S.KNAPP,D.DOYLE, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 30-AUG-23 2QME 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 2QME 1 VERSN REVDAT 2 24-FEB-09 2QME 1 VERSN REVDAT 1 28-AUG-07 2QME 0 JRNL AUTH E.UGOCHUKWU,X.YANG,J.M.ELKINS,N.BURGESS-BROWN,G.BUNKOCZI, JRNL AUTH 2 S.KNAPP,D.DOYLE JRNL TITL THE CRYSTAL STRUCTURE OF THE HUMAN RAC3 IN COMPLEX WITH THE JRNL TITL 2 CRIB DOMAIN OF HUMAN P21-ACTIVATED KINASE 1 (PAK1). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1100 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1481 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1560 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1663 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1095 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2273 ; 1.470 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2681 ; 0.884 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 202 ; 5.917 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;38.215 ;24.058 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 258 ;11.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.228 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 257 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1808 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 329 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 336 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1182 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 816 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 806 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 168 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.021 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 47 ; 0.258 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1051 ; 3.517 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 405 ; 1.286 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1644 ; 4.295 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 728 ; 6.175 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 628 ; 7.435 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 178 REMARK 3 RESIDUE RANGE : I 10 I 33 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6483 12.2223 13.6153 REMARK 3 T TENSOR REMARK 3 T11: -0.0315 T22: -0.0232 REMARK 3 T33: -0.0216 T12: -0.0033 REMARK 3 T13: 0.0029 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.4667 L22: 0.5499 REMARK 3 L33: 0.9467 L12: 0.0262 REMARK 3 L13: 0.1486 L23: 0.3052 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.0249 S13: -0.0318 REMARK 3 S21: 0.0024 S22: 0.0498 S23: -0.0251 REMARK 3 S31: -0.0216 S32: 0.0492 S33: -0.0494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54180 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21448 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 47.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : 0.34300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2G0N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 2 M (NH4)2S04, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.11300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.11300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8640 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -2.86938 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 47.59559 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 511 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 GLY I 34 REMARK 465 MET I 35 REMARK 465 PRO I 36 REMARK 465 GLU I 37 REMARK 465 GLN I 38 REMARK 465 TRP I 39 REMARK 465 ALA I 40 REMARK 465 ARG I 41 REMARK 465 LEU I 42 REMARK 465 LEU I 43 REMARK 465 GLN I 44 REMARK 465 THR I 45 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LEU A 67 CD1 REMARK 470 LYS A 123 CD CE NZ REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 163 CD NE CZ NH1 NH2 REMARK 470 THR I 33 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 386 O HOH A 500 2.15 REMARK 500 O HOH A 474 O HOH A 508 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 36 -65.85 -100.96 REMARK 500 LYS A 96 -57.09 -123.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 179 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 THR A 35 OG1 83.1 REMARK 620 3 GCP A 200 O2B 89.5 172.3 REMARK 620 4 GCP A 200 O1G 170.7 87.9 99.6 REMARK 620 5 HOH A 477 O 85.1 91.6 85.7 97.4 REMARK 620 6 HOH A 509 O 85.4 89.2 92.3 92.2 170.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GCP A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G0N RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN RAC3 IN COMPLEX WITH GDP AND CHLORINE DBREF 2QME A 1 177 UNP P60763 RAC3_HUMAN 1 177 DBREF 2QME I 10 45 UNP Q13153 PAK1_HUMAN 74 109 SEQADV 2QME SER A 0 UNP P60763 CLONING ARTIFACT SEQADV 2QME GLY A 178 UNP P60763 CLONING ARTIFACT SEQRES 1 A 179 SER MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY SEQRES 2 A 179 ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR SEQRES 3 A 179 ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP SEQRES 4 A 179 ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL SEQRES 5 A 179 ASN LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR SEQRES 6 A 179 ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL SEQRES 7 A 179 PHE LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE SEQRES 8 A 179 GLU ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS SEQRES 9 A 179 HIS CYS PRO HIS THR PRO ILE LEU LEU VAL GLY THR LYS SEQRES 10 A 179 LEU ASP LEU ARG ASP ASP LYS ASP THR ILE GLU ARG LEU SEQRES 11 A 179 ARG ASP LYS LYS LEU ALA PRO ILE THR TYR PRO GLN GLY SEQRES 12 A 179 LEU ALA MET ALA ARG GLU ILE GLY SER VAL LYS TYR LEU SEQRES 13 A 179 GLU CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL SEQRES 14 A 179 PHE ASP GLU ALA ILE ARG ALA VAL LEU GLY SEQRES 1 I 36 GLU ILE SER LEU PRO SER ASP PHE GLU HIS THR ILE HIS SEQRES 2 I 36 VAL GLY PHE ASP ALA VAL THR GLY GLU PHE THR GLY MET SEQRES 3 I 36 PRO GLU GLN TRP ALA ARG LEU LEU GLN THR HET MG A 179 1 HET GCP A 200 32 HET GOL A 301 6 HET GOL A 302 8 HETNAM MG MAGNESIUM ION HETNAM GCP PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG MG 2+ FORMUL 4 GCP C11 H18 N5 O13 P3 FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *238(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 ASP A 65 5 5 HELIX 3 3 LEU A 67 TYR A 72 5 6 HELIX 4 4 SER A 86 LYS A 96 1 11 HELIX 5 5 LYS A 96 CYS A 105 1 10 HELIX 6 6 LYS A 116 ARG A 120 5 5 HELIX 7 7 ASP A 122 ASP A 131 1 10 HELIX 8 8 THR A 138 ILE A 149 1 12 HELIX 9 9 GLY A 164 GLY A 178 1 15 SHEET 1 A 7 LYS A 153 GLU A 156 0 SHEET 2 A 7 ILE A 110 THR A 115 1 N GLY A 114 O LEU A 155 SHEET 3 A 7 VAL A 77 SER A 83 1 N ILE A 80 O VAL A 113 SHEET 4 A 7 GLN A 2 GLY A 10 1 N VAL A 9 O LEU A 79 SHEET 5 A 7 LYS A 49 THR A 58 1 O GLY A 54 N ILE A 4 SHEET 6 A 7 PHE A 37 VAL A 46 -1 N ALA A 42 O LEU A 53 SHEET 7 A 7 SER I 15 VAL I 23 -1 O SER I 15 N ASN A 43 LINK OG1 THR A 17 MG MG A 179 1555 1555 2.21 LINK OG1 THR A 35 MG MG A 179 1555 1555 2.13 LINK MG MG A 179 O2B GCP A 200 1555 1555 2.04 LINK MG MG A 179 O1G GCP A 200 1555 1555 1.97 LINK MG MG A 179 O HOH A 477 1555 1555 2.24 LINK MG MG A 179 O HOH A 509 1555 1555 2.11 SITE 1 AC1 5 THR A 17 THR A 35 GCP A 200 HOH A 477 SITE 2 AC1 5 HOH A 509 SITE 1 AC2 29 ALA A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC2 29 THR A 17 CYS A 18 PHE A 28 TYR A 32 SITE 3 AC2 29 PRO A 34 THR A 35 GLY A 60 LYS A 116 SITE 4 AC2 29 ASP A 118 LEU A 119 SER A 158 ALA A 159 SITE 5 AC2 29 LEU A 160 MG A 179 HOH A 303 HOH A 309 SITE 6 AC2 29 HOH A 319 HOH A 331 HOH A 338 HOH A 347 SITE 7 AC2 29 HOH A 359 HOH A 391 HOH A 477 HOH A 509 SITE 8 AC2 29 ALA I 27 SITE 1 AC3 7 LYS A 166 ASP A 170 ARG A 174 HOH A 489 SITE 2 AC3 7 GLU I 10 ILE I 11 HOH I 53 SITE 1 AC4 6 ARG A 163 GLY A 164 LEU A 165 LYS A 166 SITE 2 AC4 6 THR A 167 HOH A 453 CRYST1 84.226 53.480 47.682 90.00 93.45 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011873 0.000000 0.000716 0.00000 SCALE2 0.000000 0.018699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021010 0.00000