PDB Short entry for 2QNJ HEADER TRANSFERASE 18-JUL-07 2QNJ TITLE KINASE AND UBIQUITIN-ASSOCIATED DOMAINS OF MARK3/PAR-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAP/MICROTUBULE AFFINITY-REGULATING KINASE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CDC25C- ASSOCIATED PROTEIN KINASE 1, CTAK1, C-TAK1, COMPND 5 SERINE/THREONINE PROTEIN KINASE P78, SER/THR PROTEIN KINASE PAR-1, COMPND 6 PROTEIN KINASE STK10; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MARK3, CTAK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PROEX KEYWDS SERINE/THREONINE PROTEIN KINASE, UBIQUITIN-ASSOCIATED DOMAIN, MARK, KEYWDS 2 PAR-1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURPHY,D.F.J.CECCARELLI,F.SICHERI,T.PAWSON REVDAT 5 30-AUG-23 2QNJ 1 SEQADV REVDAT 4 25-OCT-17 2QNJ 1 REMARK REVDAT 3 13-JUL-11 2QNJ 1 VERSN REVDAT 2 24-FEB-09 2QNJ 1 VERSN REVDAT 1 04-SEP-07 2QNJ 0 JRNL AUTH J.M.MURPHY,D.M.KORZHNEV,D.F.CECCARELLI,D.J.BRIANT, JRNL AUTH 2 A.ZARRINE-AFSAR,F.SICHERI,L.E.KAY,T.PAWSON JRNL TITL CONFORMATIONAL INSTABILITY OF THE MARK3 UBA DOMAIN JRNL TITL 2 COMPROMISES UBIQUITIN RECOGNITION AND PROMOTES INTERACTION JRNL TITL 3 WITH THE ADJACENT KINASE DOMAIN JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 14336 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17726107 JRNL DOI 10.1073/PNAS.0703012104 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22204 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1612 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5028 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.56000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -2.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.967 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.367 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.271 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.927 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5122 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6918 ; 1.646 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 635 ; 6.356 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;35.441 ;23.983 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 909 ;20.696 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.532 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 778 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3831 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2299 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3511 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 180 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.367 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.437 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3264 ; 0.638 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5090 ; 1.041 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2097 ; 1.640 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1828 ; 2.609 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 366 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5730 25.9940 22.6130 REMARK 3 T TENSOR REMARK 3 T11: 0.0074 T22: -0.0665 REMARK 3 T33: -0.0178 T12: 0.0207 REMARK 3 T13: 0.0222 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 0.8892 L22: 1.2797 REMARK 3 L33: 2.2365 L12: -0.3483 REMARK 3 L13: 0.7047 L23: -1.4253 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.0440 S13: 0.0082 REMARK 3 S21: 0.0218 S22: -0.0124 S23: -0.0791 REMARK 3 S31: 0.1272 S32: 0.0400 S33: -0.0082 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 366 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7430 9.8480 67.8760 REMARK 3 T TENSOR REMARK 3 T11: -0.0470 T22: -0.0046 REMARK 3 T33: -0.0482 T12: -0.0056 REMARK 3 T13: 0.0263 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 1.3090 L22: 2.1802 REMARK 3 L33: 1.8341 L12: 1.0082 REMARK 3 L13: 1.0378 L23: 1.4620 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: 0.0673 S13: 0.0823 REMARK 3 S21: -0.0670 S22: -0.0043 S23: 0.0191 REMARK 3 S31: -0.1183 S32: 0.1861 S33: 0.0940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043821. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97899 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : XSCALE, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZMU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M LISO4, 100 MM HEPES PH7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.33750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.60300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.27200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.60300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.33750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.27200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2390 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 48 REMARK 465 VAL A 205 REMARK 465 GLY A 206 REMARK 465 GLY A 207 REMARK 465 LYS A 208 REMARK 465 LEU A 209 REMARK 465 LYS A 367 REMARK 465 SER A 368 REMARK 465 SER A 369 REMARK 465 GLU A 370 REMARK 465 VAL B 205 REMARK 465 GLY B 206 REMARK 465 GLY B 207 REMARK 465 SER B 368 REMARK 465 SER B 369 REMARK 465 GLU B 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 201 CG OD1 ND2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 GLU A 323 CG CD OE1 OE2 REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 PHE B 67 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 91 CG CD OE1 NE2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 117 CG CD CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 GLN B 171 CG CD OE1 NE2 REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 LEU B 209 CG CD1 CD2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 470 GLU B 313 CG CD OE1 OE2 REMARK 470 LYS B 317 CG CD CE NZ REMARK 470 GLU B 323 CG CD OE1 OE2 REMARK 470 LYS B 330 CG CD CE NZ REMARK 470 GLN B 346 CG CD OE1 NE2 REMARK 470 LYS B 353 CG CD CE NZ REMARK 470 LYS B 367 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY B 43 NE2 HIS B 52 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY A 43 N GLY B 43 3555 1.68 REMARK 500 NE2 HIS A 52 N GLY B 43 3555 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 43 N - CA - C ANGL. DEV. = -26.4 DEGREES REMARK 500 LEU B 363 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 GLY B 365 N - CA - C ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 59 -151.69 -91.30 REMARK 500 PHE A 67 -35.30 80.32 REMARK 500 ASP A 88 96.42 -59.38 REMARK 500 THR A 90 -41.81 -20.17 REMARK 500 PRO A 113 -6.84 -57.96 REMARK 500 ASP A 178 24.49 -163.81 REMARK 500 LYS A 227 -135.67 -77.42 REMARK 500 TYR A 229 64.51 -108.97 REMARK 500 GLN A 342 -40.63 -29.16 REMARK 500 MET A 352 70.87 75.22 REMARK 500 ASP A 355 -169.64 -104.15 REMARK 500 ASN B 55 32.43 -84.18 REMARK 500 LYS B 60 144.83 -173.84 REMARK 500 ASN B 66 -136.04 77.45 REMARK 500 THR B 78 -26.48 -140.15 REMARK 500 ASP B 178 14.28 -155.86 REMARK 500 LEU B 179 132.26 -33.58 REMARK 500 GLU B 315 128.06 -36.73 REMARK 500 ASP B 328 104.54 -57.21 REMARK 500 ARG B 366 -76.56 -37.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 2QNJ A 44 370 UNP P27448 MARK3_HUMAN 47 370 DBREF 2QNJ B 44 370 UNP P27448 MARK3_HUMAN 47 370 SEQADV 2QNJ GLY A 43 UNP P27448 EXPRESSION TAG SEQADV 2QNJ MET A 45 UNP P27448 EXPRESSION TAG SEQADV 2QNJ GLY A 46 UNP P27448 EXPRESSION TAG SEQADV 2QNJ SER A 47 UNP P27448 EXPRESSION TAG SEQADV 2QNJ GLY B 43 UNP P27448 EXPRESSION TAG SEQADV 2QNJ MET B 45 UNP P27448 EXPRESSION TAG SEQADV 2QNJ GLY B 46 UNP P27448 EXPRESSION TAG SEQADV 2QNJ SER B 47 UNP P27448 EXPRESSION TAG SEQRES 1 A 328 GLY ALA MET GLY SER ASP GLU GLN PRO HIS ILE GLY ASN SEQRES 2 A 328 TYR ARG LEU LEU LYS THR ILE GLY LYS GLY ASN PHE ALA SEQRES 3 A 328 LYS VAL LYS LEU ALA ARG HIS ILE LEU THR GLY ARG GLU SEQRES 4 A 328 VAL ALA ILE LYS ILE ILE ASP LYS THR GLN LEU ASN PRO SEQRES 5 A 328 THR SER LEU GLN LYS LEU PHE ARG GLU VAL ARG ILE MET SEQRES 6 A 328 LYS ILE LEU ASN HIS PRO ASN ILE VAL LYS LEU PHE GLU SEQRES 7 A 328 VAL ILE GLU THR GLU LYS THR LEU TYR LEU ILE MET GLU SEQRES 8 A 328 TYR ALA SER GLY GLY GLU VAL PHE ASP TYR LEU VAL ALA SEQRES 9 A 328 HIS GLY ARG MET LYS GLU LYS GLU ALA ARG SER LYS PHE SEQRES 10 A 328 ARG GLN ILE VAL SER ALA VAL GLN TYR CYS HIS GLN LYS SEQRES 11 A 328 ARG ILE VAL HIS ARG ASP LEU LYS ALA GLU ASN LEU LEU SEQRES 12 A 328 LEU ASP ALA ASP MET ASN ILE LYS ILE ALA ASP PHE GLY SEQRES 13 A 328 PHE SER ASN GLU PHE THR VAL GLY GLY LYS LEU ASP THR SEQRES 14 A 328 PHE CYS GLY SER PRO PRO TYR ALA ALA PRO GLU LEU PHE SEQRES 15 A 328 GLN GLY LYS LYS TYR ASP GLY PRO GLU VAL ASP VAL TRP SEQRES 16 A 328 SER LEU GLY VAL ILE LEU TYR THR LEU VAL SER GLY SER SEQRES 17 A 328 LEU PRO PHE ASP GLY GLN ASN LEU LYS GLU LEU ARG GLU SEQRES 18 A 328 ARG VAL LEU ARG GLY LYS TYR ARG ILE PRO PHE TYR MET SEQRES 19 A 328 SER THR ASP CYS GLU ASN LEU LEU LYS ARG PHE LEU VAL SEQRES 20 A 328 LEU ASN PRO ILE LYS ARG GLY THR LEU GLU GLN ILE MET SEQRES 21 A 328 LYS ASP ARG TRP ILE ASN ALA GLY HIS GLU GLU ASP GLU SEQRES 22 A 328 LEU LYS PRO PHE VAL GLU PRO GLU LEU ASP ILE SER ASP SEQRES 23 A 328 GLN LYS ARG ILE ASP ILE MET VAL GLY MET GLY TYR SER SEQRES 24 A 328 GLN GLU GLU ILE GLN GLU SER LEU SER LYS MET LYS TYR SEQRES 25 A 328 ASP GLU ILE THR ALA THR TYR LEU LEU LEU GLY ARG LYS SEQRES 26 A 328 SER SER GLU SEQRES 1 B 328 GLY ALA MET GLY SER ASP GLU GLN PRO HIS ILE GLY ASN SEQRES 2 B 328 TYR ARG LEU LEU LYS THR ILE GLY LYS GLY ASN PHE ALA SEQRES 3 B 328 LYS VAL LYS LEU ALA ARG HIS ILE LEU THR GLY ARG GLU SEQRES 4 B 328 VAL ALA ILE LYS ILE ILE ASP LYS THR GLN LEU ASN PRO SEQRES 5 B 328 THR SER LEU GLN LYS LEU PHE ARG GLU VAL ARG ILE MET SEQRES 6 B 328 LYS ILE LEU ASN HIS PRO ASN ILE VAL LYS LEU PHE GLU SEQRES 7 B 328 VAL ILE GLU THR GLU LYS THR LEU TYR LEU ILE MET GLU SEQRES 8 B 328 TYR ALA SER GLY GLY GLU VAL PHE ASP TYR LEU VAL ALA SEQRES 9 B 328 HIS GLY ARG MET LYS GLU LYS GLU ALA ARG SER LYS PHE SEQRES 10 B 328 ARG GLN ILE VAL SER ALA VAL GLN TYR CYS HIS GLN LYS SEQRES 11 B 328 ARG ILE VAL HIS ARG ASP LEU LYS ALA GLU ASN LEU LEU SEQRES 12 B 328 LEU ASP ALA ASP MET ASN ILE LYS ILE ALA ASP PHE GLY SEQRES 13 B 328 PHE SER ASN GLU PHE THR VAL GLY GLY LYS LEU ASP THR SEQRES 14 B 328 PHE CYS GLY SER PRO PRO TYR ALA ALA PRO GLU LEU PHE SEQRES 15 B 328 GLN GLY LYS LYS TYR ASP GLY PRO GLU VAL ASP VAL TRP SEQRES 16 B 328 SER LEU GLY VAL ILE LEU TYR THR LEU VAL SER GLY SER SEQRES 17 B 328 LEU PRO PHE ASP GLY GLN ASN LEU LYS GLU LEU ARG GLU SEQRES 18 B 328 ARG VAL LEU ARG GLY LYS TYR ARG ILE PRO PHE TYR MET SEQRES 19 B 328 SER THR ASP CYS GLU ASN LEU LEU LYS ARG PHE LEU VAL SEQRES 20 B 328 LEU ASN PRO ILE LYS ARG GLY THR LEU GLU GLN ILE MET SEQRES 21 B 328 LYS ASP ARG TRP ILE ASN ALA GLY HIS GLU GLU ASP GLU SEQRES 22 B 328 LEU LYS PRO PHE VAL GLU PRO GLU LEU ASP ILE SER ASP SEQRES 23 B 328 GLN LYS ARG ILE ASP ILE MET VAL GLY MET GLY TYR SER SEQRES 24 B 328 GLN GLU GLU ILE GLN GLU SER LEU SER LYS MET LYS TYR SEQRES 25 B 328 ASP GLU ILE THR ALA THR TYR LEU LEU LEU GLY ARG LYS SEQRES 26 B 328 SER SER GLU FORMUL 3 HOH *47(H2 O) HELIX 1 1 THR A 90 LEU A 92 5 3 HELIX 2 2 ASN A 93 LEU A 110 1 18 HELIX 3 3 GLU A 139 GLY A 148 1 10 HELIX 4 4 LYS A 151 LYS A 172 1 22 HELIX 5 5 LYS A 180 GLU A 182 5 3 HELIX 6 6 SER A 215 ALA A 219 5 5 HELIX 7 7 ALA A 220 GLY A 226 5 7 HELIX 8 8 GLY A 231 GLY A 249 1 19 HELIX 9 9 ASN A 257 GLY A 268 1 12 HELIX 10 10 SER A 277 LEU A 288 1 12 HELIX 11 11 THR A 297 MET A 302 1 6 HELIX 12 12 ASP A 304 ALA A 309 1 6 HELIX 13 13 ASP A 328 MET A 338 1 11 HELIX 14 14 SER A 341 MET A 352 1 12 HELIX 15 15 ASP A 355 GLY A 365 1 11 HELIX 16 16 THR B 90 LEU B 92 5 3 HELIX 17 17 ASN B 93 LEU B 110 1 18 HELIX 18 18 VAL B 140 GLY B 148 1 9 HELIX 19 19 LYS B 151 LYS B 172 1 22 HELIX 20 20 LYS B 180 GLU B 182 5 3 HELIX 21 21 SER B 200 THR B 204 5 5 HELIX 22 22 SER B 215 ALA B 220 5 6 HELIX 23 23 PRO B 221 GLY B 226 1 6 HELIX 24 24 GLY B 231 GLY B 249 1 19 HELIX 25 25 ASN B 257 GLY B 268 1 12 HELIX 26 26 SER B 277 LEU B 288 1 12 HELIX 27 27 ASN B 291 ARG B 295 5 5 HELIX 28 28 THR B 297 MET B 302 1 6 HELIX 29 29 ASP B 328 MET B 338 1 11 HELIX 30 30 SER B 341 MET B 352 1 12 HELIX 31 31 ASP B 355 LEU B 364 1 10 SHEET 1 A 6 HIS A 52 ILE A 53 0 SHEET 2 A 6 TYR A 56 LYS A 64 -1 O TYR A 56 N ILE A 53 SHEET 3 A 6 ALA A 68 HIS A 75 -1 O VAL A 70 N ILE A 62 SHEET 4 A 6 GLU A 81 ASP A 88 -1 O ILE A 86 N LYS A 69 SHEET 5 A 6 THR A 127 GLU A 133 -1 O MET A 132 N ALA A 83 SHEET 6 A 6 LEU A 118 GLU A 123 -1 N PHE A 119 O ILE A 131 SHEET 1 B 2 LEU A 184 LEU A 186 0 SHEET 2 B 2 ILE A 192 ILE A 194 -1 O LYS A 193 N LEU A 185 SHEET 1 C 6 HIS B 52 ILE B 53 0 SHEET 2 C 6 TYR B 56 GLY B 65 -1 O TYR B 56 N ILE B 53 SHEET 3 C 6 ALA B 68 HIS B 75 -1 O LEU B 72 N LEU B 59 SHEET 4 C 6 GLU B 81 ASP B 88 -1 O ILE B 84 N LYS B 71 SHEET 5 C 6 THR B 127 MET B 132 -1 O MET B 132 N ALA B 83 SHEET 6 C 6 LEU B 118 GLU B 123 -1 N PHE B 119 O ILE B 131 SHEET 1 D 3 GLY B 138 GLU B 139 0 SHEET 2 D 3 LEU B 184 LEU B 186 -1 O LEU B 186 N GLY B 138 SHEET 3 D 3 ILE B 192 ILE B 194 -1 O LYS B 193 N LEU B 185 SSBOND 1 CYS A 213 CYS B 213 1555 4556 2.49 CISPEP 1 LEU B 364 GLY B 365 0 15.35 CISPEP 2 GLY B 365 ARG B 366 0 0.58 CISPEP 3 ARG B 366 LYS B 367 0 -16.21 CRYST1 62.675 112.544 117.206 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015955 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008532 0.00000