PDB Short entry for 2QZ4 HEADER HYDROLASE 16-AUG-07 2QZ4 TITLE HUMAN PARAPLEGIN, AAA DOMAIN IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARAPLEGIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AAA DOMAIN: RESIDUES 305-565; COMPND 5 SYNONYM: SPASTIC PARAPLEGIA PROTEIN 7; COMPND 6 EC: 3.4.24.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BRAIN; SOURCE 6 GENE: SPG7; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS AAA+, SPG7, PROTEASE, ADP, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, ATP-BINDING, NUCLEOTIDE-BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,L.LEHTIO,C.H.ARROWSMITH,H.BERGLUND,R.D.BUSAM,R.COLLINS, AUTHOR 2 L.G.DAHLGREN,A.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM, AUTHOR 3 M.D.HERMAN,I.JOHANSSON,A.KALLAS,T.KOTENYOVA,M.MOCHE,M.E.NILSSON, AUTHOR 4 P.NORDLUND,T.NYMAN,J.PERSSON,C.SAGEMARK,M.SUNDSTROM,A.G.THORSELL, AUTHOR 5 L.TRESAUGES,S.VAN DEN BERG,J.WEIGELT,M.WELIN,L.HOLMBERG-SCHIAVONE, AUTHOR 6 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 2QZ4 1 REMARK SEQADV REVDAT 4 13-JUL-11 2QZ4 1 VERSN REVDAT 3 27-OCT-09 2QZ4 1 JRNL REVDAT 2 24-FEB-09 2QZ4 1 VERSN REVDAT 1 11-SEP-07 2QZ4 0 JRNL AUTH T.KARLBERG,S.VAN DEN BERG,M.HAMMARSTROM,J.SAGEMARK, JRNL AUTH 2 I.JOHANSSON,L.HOLMBERG-SCHIAVONE,H.SCHULER JRNL TITL CRYSTAL STRUCTURE OF THE ATPASE DOMAIN OF THE HUMAN AAA+ JRNL TITL 2 PROTEIN PARAPLEGIN/SPG7. JRNL REF PLOS ONE V. 4 E6975 2009 JRNL REFN ESSN 1932-6203 JRNL PMID 19841671 JRNL DOI 10.1371/JOURNAL.PONE.0006975 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12529 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 731 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 55 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.268 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1734 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1157 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2349 ; 1.603 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2821 ; 0.896 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 219 ; 6.934 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;34.176 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;17.172 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;10.286 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1902 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 346 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 370 ; 0.232 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1203 ; 0.223 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 867 ; 0.183 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 918 ; 0.093 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 102 ; 0.208 ; 0.300 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 2 ; 0.034 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.375 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.195 ; 0.300 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1195 ; 2.015 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 453 ; 0.521 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1756 ; 2.827 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 669 ; 4.104 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 593 ; 5.627 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 304 A 340 REMARK 3 ORIGIN FOR THE GROUP (A): 16.0640 37.6490 6.1370 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: -0.0237 REMARK 3 T33: -0.2895 T12: -0.2386 REMARK 3 T13: -0.1639 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 4.4227 L22: 4.3326 REMARK 3 L33: 7.2050 L12: -0.7995 REMARK 3 L13: 0.2043 L23: -1.4604 REMARK 3 S TENSOR REMARK 3 S11: -0.2523 S12: 0.0379 S13: 0.0257 REMARK 3 S21: -0.0945 S22: 0.1197 S23: -0.3562 REMARK 3 S31: -0.9012 S32: 0.7191 S33: 0.1325 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 341 A 380 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2600 29.0300 1.6920 REMARK 3 T TENSOR REMARK 3 T11: 0.0476 T22: 0.0238 REMARK 3 T33: -0.2606 T12: -0.0464 REMARK 3 T13: -0.0511 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.4391 L22: 2.4288 REMARK 3 L33: 4.4974 L12: 0.1485 REMARK 3 L13: 0.5652 L23: -0.9352 REMARK 3 S TENSOR REMARK 3 S11: -0.0948 S12: 0.0094 S13: -0.0202 REMARK 3 S21: -0.1722 S22: 0.0280 S23: -0.0322 REMARK 3 S31: -0.2415 S32: 0.1898 S33: 0.0668 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 381 A 559 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9330 25.9320 9.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.0260 T22: -0.0099 REMARK 3 T33: -0.2631 T12: -0.0322 REMARK 3 T13: -0.0460 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.6485 L22: 0.7792 REMARK 3 L33: 4.3444 L12: -0.0103 REMARK 3 L13: 0.8909 L23: -0.4729 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: -0.0081 S13: 0.0955 REMARK 3 S21: 0.0613 S22: -0.0527 S23: 0.0130 REMARK 3 S31: -0.3937 S32: 0.0272 S33: 0.1451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QZ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : 0.04100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.20300 REMARK 200 R SYM FOR SHELL (I) : 0.19100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CE7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 100MM BIS-TRIS PH 6.5, REMARK 280 200MM AMMONIUM ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.61000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 116.41500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.80500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.61000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.80500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 116.41500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER IS BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 333 REMARK 465 PHE A 334 REMARK 465 LEU A 335 REMARK 465 GLN A 336 REMARK 465 LEU A 337 REMARK 465 GLY A 338 REMARK 465 ASP A 411 REMARK 465 ALA A 412 REMARK 465 VAL A 413 REMARK 465 GLY A 414 REMARK 465 LYS A 415 REMARK 465 LYS A 416 REMARK 465 ARG A 417 REMARK 465 SER A 418 REMARK 465 THR A 419 REMARK 465 THR A 420 REMARK 465 MET A 421 REMARK 465 SER A 422 REMARK 465 GLY A 423 REMARK 465 PHE A 424 REMARK 465 SER A 425 REMARK 465 ASN A 426 REMARK 465 THR A 427 REMARK 465 GLU A 428 REMARK 465 GLU A 429 REMARK 465 ALA A 532 REMARK 465 ALA A 533 REMARK 465 ARG A 534 REMARK 465 GLU A 535 REMARK 465 GLY A 536 REMARK 465 HIS A 537 REMARK 465 THR A 538 REMARK 465 SER A 539 REMARK 465 SER A 560 REMARK 465 LYS A 561 REMARK 465 ILE A 562 REMARK 465 LEU A 563 REMARK 465 SER A 564 REMARK 465 LYS A 565 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 LYS A 340 CD CE NZ REMARK 470 GLU A 380 CG CD OE1 OE2 REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 LYS A 497 CD CE NZ REMARK 470 GLN A 500 CG CD OE1 NE2 REMARK 470 LYS A 558 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 330 87.80 -161.26 REMARK 500 GLN A 367 40.21 75.94 REMARK 500 PHE A 378 -69.29 -178.37 REMARK 500 VAL A 379 117.06 -38.00 REMARK 500 GLU A 409 60.74 61.44 REMARK 500 ARG A 470 -126.46 -115.59 REMARK 500 LEU A 498 53.97 -105.30 REMARK 500 LEU A 530 49.63 -87.09 REMARK 500 HIS A 541 33.53 -97.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 409 ILE A 410 137.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 700 DBREF 2QZ4 A 305 565 UNP Q58F00 Q58F00_HUMAN 305 565 SEQADV 2QZ4 MET A 304 UNP Q58F00 EXPRESSION TAG SEQRES 1 A 262 MET GLY VAL SER PHE LYS ASP VAL ALA GLY MET HIS GLU SEQRES 2 A 262 ALA LYS LEU GLU VAL ARG GLU PHE VAL ASP TYR LEU LYS SEQRES 3 A 262 SER PRO GLU ARG PHE LEU GLN LEU GLY ALA LYS VAL PRO SEQRES 4 A 262 LYS GLY ALA LEU LEU LEU GLY PRO PRO GLY CYS GLY LYS SEQRES 5 A 262 THR LEU LEU ALA LYS ALA VAL ALA THR GLU ALA GLN VAL SEQRES 6 A 262 PRO PHE LEU ALA MET ALA GLY ALA GLU PHE VAL GLU VAL SEQRES 7 A 262 ILE GLY GLY LEU GLY ALA ALA ARG VAL ARG SER LEU PHE SEQRES 8 A 262 LYS GLU ALA ARG ALA ARG ALA PRO CYS ILE VAL TYR ILE SEQRES 9 A 262 ASP GLU ILE ASP ALA VAL GLY LYS LYS ARG SER THR THR SEQRES 10 A 262 MET SER GLY PHE SER ASN THR GLU GLU GLU GLN THR LEU SEQRES 11 A 262 ASN GLN LEU LEU VAL GLU MET ASP GLY MET GLY THR THR SEQRES 12 A 262 ASP HIS VAL ILE VAL LEU ALA SER THR ASN ARG ALA ASP SEQRES 13 A 262 ILE LEU ASP GLY ALA LEU MET ARG PRO GLY ARG LEU ASP SEQRES 14 A 262 ARG HIS VAL PHE ILE ASP LEU PRO THR LEU GLN GLU ARG SEQRES 15 A 262 ARG GLU ILE PHE GLU GLN HIS LEU LYS SER LEU LYS LEU SEQRES 16 A 262 THR GLN SER SER THR PHE TYR SER GLN ARG LEU ALA GLU SEQRES 17 A 262 LEU THR PRO GLY PHE SER GLY ALA ASP ILE ALA ASN ILE SEQRES 18 A 262 CYS ASN GLU ALA ALA LEU HIS ALA ALA ARG GLU GLY HIS SEQRES 19 A 262 THR SER VAL HIS THR LEU ASN PHE GLU TYR ALA VAL GLU SEQRES 20 A 262 ARG VAL LEU ALA GLY THR ALA LYS LYS SER LYS ILE LEU SEQRES 21 A 262 SER LYS HET ADP A 700 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *55(H2 O) HELIX 1 1 MET A 314 SER A 330 1 17 HELIX 2 2 GLY A 354 GLN A 367 1 14 HELIX 3 3 GLY A 384 ARG A 400 1 17 HELIX 4 4 GLU A 430 GLY A 442 1 13 HELIX 5 5 ARG A 457 ARG A 467 5 11 HELIX 6 6 THR A 481 LEU A 496 1 16 HELIX 7 7 SER A 501 LEU A 512 1 12 HELIX 8 8 SER A 517 LEU A 530 1 14 HELIX 9 9 ASN A 544 LYS A 558 1 15 SHEET 1 A 5 PHE A 370 ALA A 374 0 SHEET 2 A 5 CYS A 403 ASP A 408 1 O TYR A 406 N LEU A 371 SHEET 3 A 5 VAL A 449 THR A 455 1 O LEU A 452 N ILE A 407 SHEET 4 A 5 GLY A 344 LEU A 348 1 N LEU A 347 O ALA A 453 SHEET 5 A 5 ARG A 473 PHE A 476 1 O VAL A 475 N LEU A 348 CISPEP 1 ALA A 401 PRO A 402 0 -6.40 SITE 1 AC1 18 HOH A 27 HOH A 28 HOH A 54 HOH A 55 SITE 2 AC1 18 ASP A 310 ALA A 312 PRO A 351 GLY A 352 SITE 3 AC1 18 CYS A 353 GLY A 354 LYS A 355 THR A 356 SITE 4 AC1 18 LEU A 357 ARG A 389 SER A 392 HIS A 492 SITE 5 AC1 18 GLY A 518 ALA A 519 CRYST1 57.200 57.200 155.220 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017483 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017483 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006442 0.00000