PDB Short entry for 2R02 HEADER APOPTOSIS 17-AUG-07 2R02 TITLE CRYSTAL STRUCTURE OF ALIX/AIP1 IN COMPLEX WITH THE HIV-1 YPLTSL LATE TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALIX BRO1-V DOMAINS; COMPND 5 SYNONYM: PDCD6-INTERACTING PROTEIN, ALG-2-INTERACTING PROTEIN 1, COMPND 6 HP95; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: P6-GAG; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 479-489; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD6IP, AIP1, ALIX, KIAA1375; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON+ RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE SEQUENCE OF THIS PEPTIDE NATURALLY EXISTS IN SOURCE 14 HUMAN IMMUNODEFICIENCY VIRUS TYPE 1(HIV-1). KEYWDS COILED-COIL, APOPTOSIS, CYTOPLASM, HOST-VIRUS INTERACTION, KEYWDS 2 POLYMORPHISM, PROTEIN TRANSPORT, TRANSPORT, AIDS, CAPSID PROTEIN, KEYWDS 3 LIPOPROTEIN, MEMBRANE, METAL-BINDING, MYRISTATE, NUCLEUS, KEYWDS 4 PHOSPHORYLATION, RNA-BINDING, VIRAL NUCLEOPROTEIN, VIRION, ZINC, KEYWDS 5 ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR C.P.HILL,Q.ZHAI,R.D.FISHER REVDAT 6 21-FEB-24 2R02 1 REMARK REVDAT 5 20-OCT-21 2R02 1 SEQADV REVDAT 4 25-OCT-17 2R02 1 REMARK REVDAT 3 24-FEB-09 2R02 1 VERSN REVDAT 2 05-FEB-08 2R02 1 JRNL REVDAT 1 18-DEC-07 2R02 0 JRNL AUTH Q.ZHAI,R.D.FISHER,H.Y.CHUNG,D.G.MYSZKA,W.I.SUNDQUIST, JRNL AUTH 2 C.P.HILL JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF ALIX INTERACTIONS WITH JRNL TITL 2 YPX(N)L LATE DOMAINS OF HIV-1 AND EIAV. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 43 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18066081 JRNL DOI 10.1038/NSMB1319 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 29832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5576 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.81000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 3.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -6.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.580 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.338 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.278 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.602 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5661 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7648 ; 1.511 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 706 ; 6.248 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;39.314 ;25.451 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1052 ;20.954 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.827 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 880 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4219 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2570 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3872 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 174 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.206 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3641 ; 0.615 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5697 ; 1.080 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2249 ; 1.584 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1951 ; 2.569 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): -32.9063 -20.4684 -34.3935 REMARK 3 T TENSOR REMARK 3 T11: 0.0017 T22: 0.4220 REMARK 3 T33: 0.3983 T12: 0.1474 REMARK 3 T13: -0.1242 T23: 0.1988 REMARK 3 L TENSOR REMARK 3 L11: 2.6430 L22: 3.2613 REMARK 3 L33: 1.7891 L12: -1.6112 REMARK 3 L13: 0.3864 L23: -0.3684 REMARK 3 S TENSOR REMARK 3 S11: -0.2573 S12: 0.1729 S13: 1.4491 REMARK 3 S21: -0.3886 S22: 0.0604 S23: 1.1355 REMARK 3 S31: -0.3628 S32: -1.0380 S33: 0.1969 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): -22.4690 -23.7895 -36.7121 REMARK 3 T TENSOR REMARK 3 T11: 0.1391 T22: 0.2071 REMARK 3 T33: 0.3794 T12: 0.1324 REMARK 3 T13: -0.1159 T23: 0.2486 REMARK 3 L TENSOR REMARK 3 L11: 5.8374 L22: 5.5091 REMARK 3 L33: 6.4865 L12: 1.9248 REMARK 3 L13: -0.2364 L23: -0.3309 REMARK 3 S TENSOR REMARK 3 S11: -0.1866 S12: 0.4836 S13: 0.6853 REMARK 3 S21: -0.6681 S22: 0.0122 S23: 0.6744 REMARK 3 S31: -0.1505 S32: -0.1199 S33: 0.1744 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -14.2328 -29.1596 -25.9824 REMARK 3 T TENSOR REMARK 3 T11: 0.2444 T22: 0.3008 REMARK 3 T33: 0.2559 T12: -0.0021 REMARK 3 T13: 0.1026 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 5.4977 L22: 3.6486 REMARK 3 L33: 3.8640 L12: -0.5959 REMARK 3 L13: 1.8460 L23: -1.2335 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: 0.0101 S13: 0.2227 REMARK 3 S21: -0.2138 S22: 0.1435 S23: 0.4814 REMARK 3 S31: 0.0626 S32: -0.2466 S33: -0.1082 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): 4.7076 -35.8380 -22.2180 REMARK 3 T TENSOR REMARK 3 T11: 0.2855 T22: 0.3171 REMARK 3 T33: 0.1407 T12: 0.0015 REMARK 3 T13: 0.1029 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 4.0557 L22: 1.6889 REMARK 3 L33: 1.6821 L12: -0.0997 REMARK 3 L13: 1.1583 L23: -0.2341 REMARK 3 S TENSOR REMARK 3 S11: 0.0384 S12: 0.1597 S13: -0.0639 REMARK 3 S21: -0.1145 S22: -0.0101 S23: 0.0419 REMARK 3 S31: 0.0056 S32: 0.0643 S33: -0.0283 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 292 A 363 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8002 -36.2921 -18.0431 REMARK 3 T TENSOR REMARK 3 T11: 0.3140 T22: 0.3073 REMARK 3 T33: 0.0912 T12: 0.0136 REMARK 3 T13: 0.1471 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 7.1116 L22: 2.2110 REMARK 3 L33: 1.6862 L12: -0.3822 REMARK 3 L13: 2.4068 L23: -0.9392 REMARK 3 S TENSOR REMARK 3 S11: 0.1100 S12: -0.3548 S13: -0.1176 REMARK 3 S21: 0.0314 S22: 0.0013 S23: 0.1262 REMARK 3 S31: -0.0364 S32: -0.0895 S33: -0.1113 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 364 A 471 REMARK 3 ORIGIN FOR THE GROUP (A): -73.3153 -35.2909 -56.7049 REMARK 3 T TENSOR REMARK 3 T11: 0.1867 T22: 0.2099 REMARK 3 T33: 0.2597 T12: -0.0608 REMARK 3 T13: -0.0101 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 2.2156 L22: 2.7451 REMARK 3 L33: 0.7946 L12: 2.3815 REMARK 3 L13: 0.1836 L23: -0.1675 REMARK 3 S TENSOR REMARK 3 S11: 0.4304 S12: -0.2931 S13: 0.0679 REMARK 3 S21: 0.1379 S22: -0.0586 S23: 0.2539 REMARK 3 S31: 0.2202 S32: -0.0330 S33: -0.3718 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 472 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): -68.7013 -24.7912 -62.2670 REMARK 3 T TENSOR REMARK 3 T11: 0.1019 T22: 0.1766 REMARK 3 T33: 0.3359 T12: -0.0101 REMARK 3 T13: 0.0676 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 4.1047 L22: 7.4102 REMARK 3 L33: 0.8496 L12: 5.4546 REMARK 3 L13: 0.8744 L23: 0.8343 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: 0.3525 S13: -0.4172 REMARK 3 S21: -0.2131 S22: 0.4246 S23: -0.5619 REMARK 3 S31: 0.0219 S32: 0.0174 S33: -0.4066 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 534 A 646 REMARK 3 ORIGIN FOR THE GROUP (A): -73.4009 -57.6958 -51.1263 REMARK 3 T TENSOR REMARK 3 T11: 0.3515 T22: 0.0378 REMARK 3 T33: 0.4446 T12: 0.0183 REMARK 3 T13: -0.3758 T23: 0.1394 REMARK 3 L TENSOR REMARK 3 L11: 7.4888 L22: 1.2310 REMARK 3 L33: 4.3833 L12: 1.5102 REMARK 3 L13: 4.3932 L23: 0.7366 REMARK 3 S TENSOR REMARK 3 S11: 0.7471 S12: -0.0223 S13: -0.9252 REMARK 3 S21: 0.0525 S22: -0.0045 S23: -0.1456 REMARK 3 S31: 0.8951 S32: 0.0104 S33: -0.7426 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 647 A 698 REMARK 3 ORIGIN FOR THE GROUP (A): -74.1178 -31.9422 -57.0608 REMARK 3 T TENSOR REMARK 3 T11: 0.2142 T22: 0.1393 REMARK 3 T33: 0.3163 T12: -0.0782 REMARK 3 T13: 0.0212 T23: 0.0637 REMARK 3 L TENSOR REMARK 3 L11: 11.2709 L22: 11.7859 REMARK 3 L33: 2.1637 L12: 10.8902 REMARK 3 L13: 3.5091 L23: 2.6237 REMARK 3 S TENSOR REMARK 3 S11: 0.7886 S12: -0.4701 S13: -0.3511 REMARK 3 S21: 0.5877 S22: -0.3152 S23: -0.3780 REMARK 3 S31: 0.0079 S32: -0.1615 S33: -0.4734 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): -63.5929 -33.8669 -56.4372 REMARK 3 T TENSOR REMARK 3 T11: 0.5858 T22: 0.5749 REMARK 3 T33: 0.5843 T12: -0.0065 REMARK 3 T13: 0.0054 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 15.4955 L22: 33.9449 REMARK 3 L33: 6.2797 L12: -21.2110 REMARK 3 L13: 9.8574 L23: -13.7027 REMARK 3 S TENSOR REMARK 3 S11: -2.5551 S12: -2.9719 S13: -1.2689 REMARK 3 S21: 4.6382 S22: 1.0132 S23: -1.8786 REMARK 3 S31: -0.2614 S32: -1.5616 S33: 1.5419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29846 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.25200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20-0.25 M MGCL2, 7-10% PEG 4000, 0.1 REMARK 280 M NAMES, PH 5.9, SITTING DROP VAPOR DIFFUSION, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.96150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.53900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.96150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.53900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 374 CD LYS A 374 CE 0.158 REMARK 500 LYS A 374 CE LYS A 374 NZ 0.245 REMARK 500 GLN A 544 CD GLN A 544 OE1 0.145 REMARK 500 GLU A 547 CD GLU A 547 OE1 0.183 REMARK 500 GLU A 547 CD GLU A 547 OE2 0.267 REMARK 500 SER A 554 CB SER A 554 OG 0.161 REMARK 500 LYS A 627 CD LYS A 627 CE 0.343 REMARK 500 LYS A 627 CE LYS A 627 NZ 0.326 REMARK 500 LEU B 44 C LEU B 44 O 0.556 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 374 CD - CE - NZ ANGL. DEV. = -15.3 DEGREES REMARK 500 GLU A 547 OE1 - CD - OE2 ANGL. DEV. = 9.6 DEGREES REMARK 500 LYS A 627 CD - CE - NZ ANGL. DEV. = -21.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 35 43.04 -72.93 REMARK 500 GLN A 36 -27.28 -175.83 REMARK 500 VAL A 54 -24.63 -142.34 REMARK 500 LEU A 58 -76.86 -138.15 REMARK 500 LYS A 60 37.98 -154.09 REMARK 500 GLU A 62 2.11 -67.83 REMARK 500 LYS A 81 -131.63 -112.33 REMARK 500 PHE A 82 120.80 -14.80 REMARK 500 PRO A 83 79.34 -60.45 REMARK 500 SER A 85 6.66 -59.85 REMARK 500 ASN A 87 100.23 -43.27 REMARK 500 GLN A 88 -9.99 -151.72 REMARK 500 LEU A 91 99.78 -69.96 REMARK 500 ALA A 170 -71.44 -77.73 REMARK 500 SER A 172 66.90 -102.35 REMARK 500 TYR A 233 57.74 -119.97 REMARK 500 LYS A 234 108.55 -174.60 REMARK 500 ILE A 318 -73.83 -90.75 REMARK 500 SER A 398 -7.73 -58.27 REMARK 500 ASP A 407 72.65 -107.92 REMARK 500 SER A 409 -147.14 -99.43 REMARK 500 GLN A 427 7.59 -63.49 REMARK 500 LYS A 473 -69.59 -26.99 REMARK 500 ASN A 482 -56.99 -27.64 REMARK 500 PRO A 526 157.70 -47.47 REMARK 500 MET A 543 36.76 -71.25 REMARK 500 GLN A 544 -81.13 -60.50 REMARK 500 ASN A 628 49.38 -95.23 REMARK 500 LYS A 638 3.51 -67.11 REMARK 500 LEU B 35 -86.96 -84.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R03 RELATED DB: PDB REMARK 900 RELATED ID: 2R05 RELATED DB: PDB DBREF 2R02 A 2 698 UNP Q8WUM4 PDC6I_HUMAN 2 698 DBREF 2R02 B 34 44 UNP Q9WC62 GAG_HV1S9 479 489 SEQADV 2R02 TYR A 268 UNP Q8WUM4 LYS 268 ENGINEERED MUTATION SEQADV 2R02 TYR A 269 UNP Q8WUM4 LYS 269 ENGINEERED MUTATION SEQRES 1 A 697 ALA THR PHE ILE SER VAL GLN LEU LYS LYS THR SER GLU SEQRES 2 A 697 VAL ASP LEU ALA LYS PRO LEU VAL LYS PHE ILE GLN GLN SEQRES 3 A 697 THR TYR PRO SER GLY GLY GLU GLU GLN ALA GLN TYR CYS SEQRES 4 A 697 ARG ALA ALA GLU GLU LEU SER LYS LEU ARG ARG ALA ALA SEQRES 5 A 697 VAL GLY ARG PRO LEU ASP LYS HIS GLU GLY ALA LEU GLU SEQRES 6 A 697 THR LEU LEU ARG TYR TYR ASP GLN ILE CYS SER ILE GLU SEQRES 7 A 697 PRO LYS PHE PRO PHE SER GLU ASN GLN ILE CYS LEU THR SEQRES 8 A 697 PHE THR TRP LYS ASP ALA PHE ASP LYS GLY SER LEU PHE SEQRES 9 A 697 GLY GLY SER VAL LYS LEU ALA LEU ALA SER LEU GLY TYR SEQRES 10 A 697 GLU LYS SER CYS VAL LEU PHE ASN CYS ALA ALA LEU ALA SEQRES 11 A 697 SER GLN ILE ALA ALA GLU GLN ASN LEU ASP ASN ASP GLU SEQRES 12 A 697 GLY LEU LYS ILE ALA ALA LYS HIS TYR GLN PHE ALA SER SEQRES 13 A 697 GLY ALA PHE LEU HIS ILE LYS GLU THR VAL LEU SER ALA SEQRES 14 A 697 LEU SER ARG GLU PRO THR VAL ASP ILE SER PRO ASP THR SEQRES 15 A 697 VAL GLY THR LEU SER LEU ILE MET LEU ALA GLN ALA GLN SEQRES 16 A 697 GLU VAL PHE PHE LEU LYS ALA THR ARG ASP LYS MET LYS SEQRES 17 A 697 ASP ALA ILE ILE ALA LYS LEU ALA ASN GLN ALA ALA ASP SEQRES 18 A 697 TYR PHE GLY ASP ALA PHE LYS GLN CYS GLN TYR LYS ASP SEQRES 19 A 697 THR LEU PRO LYS GLU VAL PHE PRO VAL LEU ALA ALA LYS SEQRES 20 A 697 HIS CYS ILE MET GLN ALA ASN ALA GLU TYR HIS GLN SER SEQRES 21 A 697 ILE LEU ALA LYS GLN GLN TYR TYR PHE GLY GLU GLU ILE SEQRES 22 A 697 ALA ARG LEU GLN HIS ALA ALA GLU LEU ILE LYS THR VAL SEQRES 23 A 697 ALA SER ARG TYR ASP GLU TYR VAL ASN VAL LYS ASP PHE SEQRES 24 A 697 SER ASP LYS ILE ASN ARG ALA LEU ALA ALA ALA LYS LYS SEQRES 25 A 697 ASP ASN ASP PHE ILE TYR HIS ASP ARG VAL PRO ASP LEU SEQRES 26 A 697 LYS ASP LEU ASP PRO ILE GLY LYS ALA THR LEU VAL LYS SEQRES 27 A 697 SER THR PRO VAL ASN VAL PRO ILE SER GLN LYS PHE THR SEQRES 28 A 697 ASP LEU PHE GLU LYS MET VAL PRO VAL SER VAL GLN GLN SEQRES 29 A 697 SER LEU ALA ALA TYR ASN GLN ARG LYS ALA ASP LEU VAL SEQRES 30 A 697 ASN ARG SER ILE ALA GLN MET ARG GLU ALA THR THR LEU SEQRES 31 A 697 ALA ASN GLY VAL LEU ALA SER LEU ASN LEU PRO ALA ALA SEQRES 32 A 697 ILE GLU ASP VAL SER GLY ASP THR VAL PRO GLN SER ILE SEQRES 33 A 697 LEU THR LYS SER ARG SER VAL ILE GLU GLN GLY GLY ILE SEQRES 34 A 697 GLN THR VAL ASP GLN LEU ILE LYS GLU LEU PRO GLU LEU SEQRES 35 A 697 LEU GLN ARG ASN ARG GLU ILE LEU ASP GLU SER LEU ARG SEQRES 36 A 697 LEU LEU ASP GLU GLU GLU ALA THR ASP ASN ASP LEU ARG SEQRES 37 A 697 ALA LYS PHE LYS GLU ARG TRP GLN ARG THR PRO SER ASN SEQRES 38 A 697 GLU LEU TYR LYS PRO LEU ARG ALA GLU GLY THR ASN PHE SEQRES 39 A 697 ARG THR VAL LEU ASP LYS ALA VAL GLN ALA ASP GLY GLN SEQRES 40 A 697 VAL LYS GLU CYS TYR GLN SER HIS ARG ASP THR ILE VAL SEQRES 41 A 697 LEU LEU CYS LYS PRO GLU PRO GLU LEU ASN ALA ALA ILE SEQRES 42 A 697 PRO SER ALA ASN PRO ALA LYS THR MET GLN GLY SER GLU SEQRES 43 A 697 VAL VAL ASN VAL LEU LYS SER LEU LEU SER ASN LEU ASP SEQRES 44 A 697 GLU VAL LYS LYS GLU ARG GLU GLY LEU GLU ASN ASP LEU SEQRES 45 A 697 LYS SER VAL ASN PHE ASP MET THR SER LYS PHE LEU THR SEQRES 46 A 697 ALA LEU ALA GLN ASP GLY VAL ILE ASN GLU GLU ALA LEU SEQRES 47 A 697 SER VAL THR GLU LEU ASP ARG VAL TYR GLY GLY LEU THR SEQRES 48 A 697 THR LYS VAL GLN GLU SER LEU LYS LYS GLN GLU GLY LEU SEQRES 49 A 697 LEU LYS ASN ILE GLN VAL SER HIS GLN GLU PHE SER LYS SEQRES 50 A 697 MET LYS GLN SER ASN ASN GLU ALA ASN LEU ARG GLU GLU SEQRES 51 A 697 VAL LEU LYS ASN LEU ALA THR ALA TYR ASP ASN PHE VAL SEQRES 52 A 697 GLU LEU VAL ALA ASN LEU LYS GLU GLY THR LYS PHE TYR SEQRES 53 A 697 ASN GLU LEU THR GLU ILE LEU VAL ARG PHE GLN ASN LYS SEQRES 54 A 697 CYS SER ASP ILE VAL PHE ALA ARG SEQRES 1 B 11 GLU LEU TYR PRO LEU THR SER LEU ARG SER LEU FORMUL 3 HOH *17(H2 O) HELIX 1 1 LEU A 17 TYR A 29 1 13 HELIX 2 2 GLN A 36 GLY A 55 1 20 HELIX 3 3 HIS A 61 ILE A 78 1 18 HELIX 4 4 SER A 115 ALA A 136 1 22 HELIX 5 5 ASN A 142 LEU A 171 1 30 HELIX 6 6 THR A 176 ILE A 179 5 4 HELIX 7 7 SER A 180 ASP A 206 1 27 HELIX 8 8 LYS A 209 TYR A 233 1 25 HELIX 9 9 GLU A 240 GLN A 267 1 28 HELIX 10 10 TYR A 269 TYR A 291 1 23 HELIX 11 11 ASP A 292 VAL A 295 5 4 HELIX 12 12 VAL A 297 ILE A 318 1 22 HELIX 13 13 ASP A 325 LEU A 329 5 5 HELIX 14 14 PRO A 360 LEU A 399 1 40 HELIX 15 15 ALA A 403 ASP A 407 5 5 HELIX 16 16 PRO A 414 GLN A 427 1 14 HELIX 17 17 GLY A 429 GLU A 439 1 11 HELIX 18 18 GLU A 439 PHE A 472 1 34 HELIX 19 19 PRO A 480 CYS A 524 1 45 HELIX 20 20 PRO A 526 ILE A 534 1 9 HELIX 21 21 SER A 546 VAL A 576 1 31 HELIX 22 22 MET A 580 ASP A 591 1 12 HELIX 23 23 ASN A 595 LYS A 638 1 44 HELIX 24 24 ASN A 643 ARG A 698 1 56 HELIX 25 25 PRO B 37 SER B 43 1 7 SHEET 1 A 2 PHE A 93 LYS A 96 0 SHEET 2 A 2 LYS A 110 LEU A 113 -1 O LEU A 113 N PHE A 93 CISPEP 1 VAL A 345 PRO A 346 0 6.96 CISPEP 2 LEU A 401 PRO A 402 0 3.65 CRYST1 145.923 99.078 73.226 90.00 107.32 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006853 0.000000 0.002137 0.00000 SCALE2 0.000000 0.010093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014305 0.00000