PDB Short entry for 2R05 HEADER APOPTOSIS 17-AUG-07 2R05 TITLE CRYSTAL STRUCTURE OF ALIX/AIP1 IN COMPLEX WITH THE HIV-1 YPLASL LATE TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALIX BRO1-V DOMAINS; COMPND 5 SYNONYM: PDCD6-INTERACTING PROTEIN, ALG-2-INTERACTING PROTEIN 1, COMPND 6 HP95; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: P6-GAG; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 482-492; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD6IP, AIP1, ALIX, KIAA1375; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON+ RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE SEQUENCE OF THIS PEPTIDE NATURALLY EXISTS IN SOURCE 14 HUMAN IMMUNODEFICIENCY VIRUS TYPE 1(HIV-1). KEYWDS COILED-COIL, APOPTOSIS, CYTOPLASM, HOST-VIRUS INTERACTION, KEYWDS 2 POLYMORPHISM, PROTEIN TRANSPORT, TRANSPORT, AIDS, CAPSID PROTEIN, KEYWDS 3 LIPOPROTEIN, MEMBRANE, METAL-BINDING, MYRISTATE, NUCLEUS, KEYWDS 4 PHOSPHORYLATION, RNA-BINDING, VIRAL NUCLEOPROTEIN, VIRION, ZINC, KEYWDS 5 ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR C.P.HILL,Q.ZHAI,R.D.FISHER REVDAT 6 21-FEB-24 2R05 1 REMARK REVDAT 5 20-OCT-21 2R05 1 SEQADV REVDAT 4 25-OCT-17 2R05 1 REMARK REVDAT 3 24-FEB-09 2R05 1 VERSN REVDAT 2 05-FEB-08 2R05 1 JRNL REVDAT 1 18-DEC-07 2R05 0 JRNL AUTH Q.ZHAI,R.D.FISHER,H.Y.CHUNG,D.G.MYSZKA,W.I.SUNDQUIST, JRNL AUTH 2 C.P.HILL JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF ALIX INTERACTIONS WITH JRNL TITL 2 YPX(N)L LATE DOMAINS OF HIV-1 AND EIAV. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 43 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18066081 JRNL DOI 10.1038/NSMB1319 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 32396 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1611 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2309 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5574 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.48000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : 3.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -6.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.477 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5659 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7645 ; 1.309 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 706 ; 5.754 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;38.780 ;25.451 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1051 ;20.109 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 879 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4219 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2435 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3883 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 129 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3644 ; 0.604 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5695 ; 1.045 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2244 ; 1.549 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1950 ; 2.413 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): -32.9678 -20.4479 -34.4244 REMARK 3 T TENSOR REMARK 3 T11: 0.0194 T22: 0.2221 REMARK 3 T33: 0.6284 T12: 0.1371 REMARK 3 T13: -0.0986 T23: 0.2335 REMARK 3 L TENSOR REMARK 3 L11: 2.9273 L22: 2.7298 REMARK 3 L33: 3.1810 L12: -1.1422 REMARK 3 L13: 0.7667 L23: -0.9420 REMARK 3 S TENSOR REMARK 3 S11: -0.1690 S12: 0.5392 S13: 1.4192 REMARK 3 S21: -0.3152 S22: 0.1820 S23: 1.2356 REMARK 3 S31: -0.4319 S32: -0.9542 S33: -0.0130 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): -22.6133 -23.9032 -36.8869 REMARK 3 T TENSOR REMARK 3 T11: 0.1758 T22: 0.2378 REMARK 3 T33: 0.3986 T12: 0.0845 REMARK 3 T13: -0.0987 T23: 0.2207 REMARK 3 L TENSOR REMARK 3 L11: 5.5599 L22: 5.5197 REMARK 3 L33: 5.8274 L12: 1.5369 REMARK 3 L13: -1.0418 L23: -0.6743 REMARK 3 S TENSOR REMARK 3 S11: -0.2205 S12: 0.5082 S13: 0.5696 REMARK 3 S21: -0.6157 S22: 0.0794 S23: 0.6682 REMARK 3 S31: -0.1604 S32: -0.0717 S33: 0.1411 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 291 REMARK 3 ORIGIN FOR THE GROUP (A): -0.9237 -33.8505 -23.3465 REMARK 3 T TENSOR REMARK 3 T11: 0.3413 T22: 0.3378 REMARK 3 T33: 0.1918 T12: -0.0132 REMARK 3 T13: 0.1087 T23: 0.0275 REMARK 3 L TENSOR REMARK 3 L11: 3.8553 L22: 1.4999 REMARK 3 L33: 1.4085 L12: -0.4141 REMARK 3 L13: 1.0735 L23: -0.5783 REMARK 3 S TENSOR REMARK 3 S11: 0.0542 S12: 0.1170 S13: 0.0223 REMARK 3 S21: -0.0743 S22: 0.0310 S23: 0.1366 REMARK 3 S31: 0.0093 S32: -0.0351 S33: -0.0852 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 292 A 367 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7270 -36.3948 -19.3960 REMARK 3 T TENSOR REMARK 3 T11: 0.3664 T22: 0.3289 REMARK 3 T33: 0.1890 T12: 0.0141 REMARK 3 T13: 0.1623 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 5.7487 L22: 1.7128 REMARK 3 L33: 1.6821 L12: -0.2920 REMARK 3 L13: 2.1148 L23: -0.8761 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: -0.2970 S13: -0.1584 REMARK 3 S21: 0.0329 S22: 0.0579 S23: 0.1657 REMARK 3 S31: -0.0141 S32: -0.1267 S33: -0.1351 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 368 A 425 REMARK 3 ORIGIN FOR THE GROUP (A): -79.8019 -51.2075 -55.5551 REMARK 3 T TENSOR REMARK 3 T11: 0.3177 T22: 0.1632 REMARK 3 T33: 0.2424 T12: -0.0770 REMARK 3 T13: -0.1435 T23: 0.1717 REMARK 3 L TENSOR REMARK 3 L11: 5.9663 L22: 2.5995 REMARK 3 L33: 3.8162 L12: 1.1356 REMARK 3 L13: 2.9232 L23: 0.0194 REMARK 3 S TENSOR REMARK 3 S11: 0.6631 S12: 0.0013 S13: -0.4820 REMARK 3 S21: 0.2662 S22: -0.1335 S23: -0.1379 REMARK 3 S31: 0.5362 S32: 0.1317 S33: -0.5297 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 426 A 513 REMARK 3 ORIGIN FOR THE GROUP (A): -62.6182 -16.9447 -61.1143 REMARK 3 T TENSOR REMARK 3 T11: 0.1618 T22: 0.1929 REMARK 3 T33: 0.3546 T12: -0.0100 REMARK 3 T13: 0.1411 T23: -0.0876 REMARK 3 L TENSOR REMARK 3 L11: 8.5385 L22: 12.0780 REMARK 3 L33: 0.7565 L12: 9.9967 REMARK 3 L13: 0.7204 L23: 0.3333 REMARK 3 S TENSOR REMARK 3 S11: 0.2235 S12: 0.1135 S13: -0.2822 REMARK 3 S21: 0.0230 S22: 0.1350 S23: -0.2099 REMARK 3 S31: -0.0227 S32: 0.0563 S33: -0.3585 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 514 A 646 REMARK 3 ORIGIN FOR THE GROUP (A): -76.7513 -55.2397 -53.2044 REMARK 3 T TENSOR REMARK 3 T11: 0.3062 T22: 0.1395 REMARK 3 T33: 0.3727 T12: -0.0354 REMARK 3 T13: -0.2130 T23: 0.1254 REMARK 3 L TENSOR REMARK 3 L11: 4.4854 L22: 1.2855 REMARK 3 L33: 2.2536 L12: 0.5161 REMARK 3 L13: 2.0733 L23: -0.1927 REMARK 3 S TENSOR REMARK 3 S11: 0.4827 S12: -0.1987 S13: -0.5812 REMARK 3 S21: -0.0051 S22: -0.0023 S23: -0.0868 REMARK 3 S31: 0.6190 S32: -0.0919 S33: -0.4804 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 647 A 698 REMARK 3 ORIGIN FOR THE GROUP (A): -74.0723 -31.8188 -57.4139 REMARK 3 T TENSOR REMARK 3 T11: 0.2578 T22: 0.1658 REMARK 3 T33: 0.3334 T12: -0.0639 REMARK 3 T13: 0.0132 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 10.4195 L22: 11.2379 REMARK 3 L33: 1.9641 L12: 10.1893 REMARK 3 L13: 3.2690 L23: 2.6288 REMARK 3 S TENSOR REMARK 3 S11: 0.6601 S12: -0.4473 S13: -0.4169 REMARK 3 S21: 0.4934 S22: -0.1995 S23: -0.5331 REMARK 3 S31: -0.0389 S32: -0.0989 S33: -0.4606 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): -63.6858 -33.7358 -56.8205 REMARK 3 T TENSOR REMARK 3 T11: 0.6607 T22: 0.6489 REMARK 3 T33: 0.6593 T12: -0.0036 REMARK 3 T13: 0.0053 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 12.1121 L22: 29.0939 REMARK 3 L33: 2.8645 L12: -18.7720 REMARK 3 L13: 5.8902 L23: -9.1290 REMARK 3 S TENSOR REMARK 3 S11: -2.5586 S12: -4.1147 S13: -1.8098 REMARK 3 S21: 3.5683 S22: 0.6065 S23: -1.0603 REMARK 3 S31: 0.0765 S32: -1.1331 S33: 1.9520 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044262. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32602 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20-0.25 M MGCL2, 7-10% PEG 4000, 0.1 REMARK 280 M NAMES, PH 5.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.04500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.04500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU B 44 C LEU B 44 O 0.415 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 36 -24.28 -146.84 REMARK 500 VAL A 54 -27.29 -149.88 REMARK 500 LEU A 58 -80.06 -141.33 REMARK 500 LYS A 60 30.51 -146.06 REMARK 500 LYS A 81 -121.18 -83.06 REMARK 500 PHE A 82 134.53 -24.06 REMARK 500 SER A 85 40.08 -70.74 REMARK 500 GLU A 86 53.55 -166.22 REMARK 500 ASN A 87 107.67 -23.75 REMARK 500 GLN A 88 -7.81 -164.81 REMARK 500 PHE A 105 87.74 -69.18 REMARK 500 LEU A 171 93.80 -69.70 REMARK 500 LYS A 234 118.54 -168.67 REMARK 500 VAL A 297 -1.80 -140.95 REMARK 500 ILE A 318 -75.66 -93.18 REMARK 500 GLN A 365 43.00 -69.99 REMARK 500 SER A 366 -26.58 -159.03 REMARK 500 SER A 409 -144.80 -97.57 REMARK 500 THR A 542 35.82 -78.54 REMARK 500 MET A 543 41.84 -108.80 REMARK 500 GLN A 544 -90.76 -72.23 REMARK 500 VAL A 593 -168.62 -121.42 REMARK 500 ASN A 595 78.39 -103.57 REMARK 500 LEU B 35 -81.39 -76.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R02 RELATED DB: PDB REMARK 900 STRUCTURE OF ALIX/AIP1 IN COMPLEX WITH THE HIV-1 YPLTSL LATE DOMAIN REMARK 900 RELATED ID: 2R03 RELATED DB: PDB REMARK 900 STRUCTURE OF ALIX/AIP1 IN COMPLEX WITH THE EIAV YPDL LATE DOMAIN DBREF 2R05 A 2 698 UNP Q8WUM4 PDC6I_HUMAN 2 698 DBREF 2R05 B 34 44 UNP P35962 GAG_HV1Y2 482 492 SEQADV 2R05 TYR A 268 UNP Q8WUM4 LYS 268 ENGINEERED MUTATION SEQADV 2R05 TYR A 269 UNP Q8WUM4 LYS 269 ENGINEERED MUTATION SEQRES 1 A 697 ALA THR PHE ILE SER VAL GLN LEU LYS LYS THR SER GLU SEQRES 2 A 697 VAL ASP LEU ALA LYS PRO LEU VAL LYS PHE ILE GLN GLN SEQRES 3 A 697 THR TYR PRO SER GLY GLY GLU GLU GLN ALA GLN TYR CYS SEQRES 4 A 697 ARG ALA ALA GLU GLU LEU SER LYS LEU ARG ARG ALA ALA SEQRES 5 A 697 VAL GLY ARG PRO LEU ASP LYS HIS GLU GLY ALA LEU GLU SEQRES 6 A 697 THR LEU LEU ARG TYR TYR ASP GLN ILE CYS SER ILE GLU SEQRES 7 A 697 PRO LYS PHE PRO PHE SER GLU ASN GLN ILE CYS LEU THR SEQRES 8 A 697 PHE THR TRP LYS ASP ALA PHE ASP LYS GLY SER LEU PHE SEQRES 9 A 697 GLY GLY SER VAL LYS LEU ALA LEU ALA SER LEU GLY TYR SEQRES 10 A 697 GLU LYS SER CYS VAL LEU PHE ASN CYS ALA ALA LEU ALA SEQRES 11 A 697 SER GLN ILE ALA ALA GLU GLN ASN LEU ASP ASN ASP GLU SEQRES 12 A 697 GLY LEU LYS ILE ALA ALA LYS HIS TYR GLN PHE ALA SER SEQRES 13 A 697 GLY ALA PHE LEU HIS ILE LYS GLU THR VAL LEU SER ALA SEQRES 14 A 697 LEU SER ARG GLU PRO THR VAL ASP ILE SER PRO ASP THR SEQRES 15 A 697 VAL GLY THR LEU SER LEU ILE MET LEU ALA GLN ALA GLN SEQRES 16 A 697 GLU VAL PHE PHE LEU LYS ALA THR ARG ASP LYS MET LYS SEQRES 17 A 697 ASP ALA ILE ILE ALA LYS LEU ALA ASN GLN ALA ALA ASP SEQRES 18 A 697 TYR PHE GLY ASP ALA PHE LYS GLN CYS GLN TYR LYS ASP SEQRES 19 A 697 THR LEU PRO LYS GLU VAL PHE PRO VAL LEU ALA ALA LYS SEQRES 20 A 697 HIS CYS ILE MET GLN ALA ASN ALA GLU TYR HIS GLN SER SEQRES 21 A 697 ILE LEU ALA LYS GLN GLN TYR TYR PHE GLY GLU GLU ILE SEQRES 22 A 697 ALA ARG LEU GLN HIS ALA ALA GLU LEU ILE LYS THR VAL SEQRES 23 A 697 ALA SER ARG TYR ASP GLU TYR VAL ASN VAL LYS ASP PHE SEQRES 24 A 697 SER ASP LYS ILE ASN ARG ALA LEU ALA ALA ALA LYS LYS SEQRES 25 A 697 ASP ASN ASP PHE ILE TYR HIS ASP ARG VAL PRO ASP LEU SEQRES 26 A 697 LYS ASP LEU ASP PRO ILE GLY LYS ALA THR LEU VAL LYS SEQRES 27 A 697 SER THR PRO VAL ASN VAL PRO ILE SER GLN LYS PHE THR SEQRES 28 A 697 ASP LEU PHE GLU LYS MET VAL PRO VAL SER VAL GLN GLN SEQRES 29 A 697 SER LEU ALA ALA TYR ASN GLN ARG LYS ALA ASP LEU VAL SEQRES 30 A 697 ASN ARG SER ILE ALA GLN MET ARG GLU ALA THR THR LEU SEQRES 31 A 697 ALA ASN GLY VAL LEU ALA SER LEU ASN LEU PRO ALA ALA SEQRES 32 A 697 ILE GLU ASP VAL SER GLY ASP THR VAL PRO GLN SER ILE SEQRES 33 A 697 LEU THR LYS SER ARG SER VAL ILE GLU GLN GLY GLY ILE SEQRES 34 A 697 GLN THR VAL ASP GLN LEU ILE LYS GLU LEU PRO GLU LEU SEQRES 35 A 697 LEU GLN ARG ASN ARG GLU ILE LEU ASP GLU SER LEU ARG SEQRES 36 A 697 LEU LEU ASP GLU GLU GLU ALA THR ASP ASN ASP LEU ARG SEQRES 37 A 697 ALA LYS PHE LYS GLU ARG TRP GLN ARG THR PRO SER ASN SEQRES 38 A 697 GLU LEU TYR LYS PRO LEU ARG ALA GLU GLY THR ASN PHE SEQRES 39 A 697 ARG THR VAL LEU ASP LYS ALA VAL GLN ALA ASP GLY GLN SEQRES 40 A 697 VAL LYS GLU CYS TYR GLN SER HIS ARG ASP THR ILE VAL SEQRES 41 A 697 LEU LEU CYS LYS PRO GLU PRO GLU LEU ASN ALA ALA ILE SEQRES 42 A 697 PRO SER ALA ASN PRO ALA LYS THR MET GLN GLY SER GLU SEQRES 43 A 697 VAL VAL ASN VAL LEU LYS SER LEU LEU SER ASN LEU ASP SEQRES 44 A 697 GLU VAL LYS LYS GLU ARG GLU GLY LEU GLU ASN ASP LEU SEQRES 45 A 697 LYS SER VAL ASN PHE ASP MET THR SER LYS PHE LEU THR SEQRES 46 A 697 ALA LEU ALA GLN ASP GLY VAL ILE ASN GLU GLU ALA LEU SEQRES 47 A 697 SER VAL THR GLU LEU ASP ARG VAL TYR GLY GLY LEU THR SEQRES 48 A 697 THR LYS VAL GLN GLU SER LEU LYS LYS GLN GLU GLY LEU SEQRES 49 A 697 LEU LYS ASN ILE GLN VAL SER HIS GLN GLU PHE SER LYS SEQRES 50 A 697 MET LYS GLN SER ASN ASN GLU ALA ASN LEU ARG GLU GLU SEQRES 51 A 697 VAL LEU LYS ASN LEU ALA THR ALA TYR ASP ASN PHE VAL SEQRES 52 A 697 GLU LEU VAL ALA ASN LEU LYS GLU GLY THR LYS PHE TYR SEQRES 53 A 697 ASN GLU LEU THR GLU ILE LEU VAL ARG PHE GLN ASN LYS SEQRES 54 A 697 CYS SER ASP ILE VAL PHE ALA ARG SEQRES 1 B 11 GLU LEU TYR PRO LEU ALA SER LEU ARG SER LEU FORMUL 3 HOH *17(H2 O) HELIX 1 1 LEU A 17 TYR A 29 1 13 HELIX 2 2 GLY A 33 GLY A 55 1 23 HELIX 3 3 HIS A 61 GLU A 79 1 19 HELIX 4 4 SER A 115 GLU A 137 1 23 HELIX 5 5 ASN A 142 GLU A 165 1 24 HELIX 6 6 THR A 166 LEU A 171 1 6 HELIX 7 7 THR A 176 ILE A 179 5 4 HELIX 8 8 SER A 180 ASP A 206 1 27 HELIX 9 9 LYS A 209 TYR A 233 1 25 HELIX 10 10 GLU A 240 GLN A 267 1 28 HELIX 11 11 TYR A 269 ASP A 292 1 24 HELIX 12 12 VAL A 297 ILE A 318 1 22 HELIX 13 13 ASP A 325 LEU A 329 5 5 HELIX 14 14 PRO A 360 SER A 398 1 39 HELIX 15 15 ALA A 403 ASP A 407 5 5 HELIX 16 16 PRO A 414 GLN A 427 1 14 HELIX 17 17 GLY A 429 PHE A 472 1 44 HELIX 18 18 PRO A 480 CYS A 524 1 45 HELIX 19 19 PRO A 526 ILE A 534 1 9 HELIX 20 20 SER A 546 VAL A 576 1 31 HELIX 21 21 MET A 580 ASP A 591 1 12 HELIX 22 22 ASN A 595 LYS A 640 1 46 HELIX 23 23 ASN A 643 ARG A 698 1 56 HELIX 24 24 PRO B 37 SER B 43 1 7 SHEET 1 A 2 PHE A 93 LYS A 96 0 SHEET 2 A 2 LYS A 110 LEU A 113 -1 O LEU A 113 N PHE A 93 CISPEP 1 VAL A 345 PRO A 346 0 7.58 CISPEP 2 LEU A 401 PRO A 402 0 0.94 CRYST1 146.090 99.440 73.543 90.00 107.29 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006845 0.000000 0.002130 0.00000 SCALE2 0.000000 0.010056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014241 0.00000