PDB Short entry for 2R17
HEADER    PROTEIN TRANSPORT                       22-AUG-07   2R17              
TITLE     FUNCTIONAL ARCHITECTURE OF THE RETROMER CARGO-RECOGNITION COMPLEX     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 29;            
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: VESICLE PROTEIN SORTING 29, HVPS29, PEP11;                  
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35;            
COMPND   8 CHAIN: C, D;                                                         
COMPND   9 SYNONYM: VESICLE PROTEIN SORTING 35, HVPS35, MATERNAL-EMBRYONIC 3;   
COMPND  10 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: VPS29;                                                         
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 MOL_ID: 2;                                                           
SOURCE  10 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  11 ORGANISM_COMMON: HUMAN;                                              
SOURCE  12 ORGANISM_TAXID: 9606;                                                
SOURCE  13 GENE: VPS35, MEM3;                                                   
SOURCE  14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE  15 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE  16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)                                  
KEYWDS    PROTEIN TRANSPORT, MEMBRANE, PHOSPHORYLATION                          
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.HIERRO,A.L.ROJAS,R.ROJAS,N.MURTHY,G.EFFANTIN,A.V.KAJAVA,A.C.STEVEN, 
AUTHOR   2 J.S.BONIFACINO,J.H.HURLEY                                            
REVDAT   4   25-OCT-17 2R17    1       REMARK                                   
REVDAT   3   13-JUL-11 2R17    1       VERSN                                    
REVDAT   2   24-FEB-09 2R17    1       VERSN                                    
REVDAT   1   30-OCT-07 2R17    0                                                
JRNL        AUTH   A.HIERRO,A.L.ROJAS,R.ROJAS,N.MURTHY,G.EFFANTIN,A.V.KAJAVA,   
JRNL        AUTH 2 A.C.STEVEN,J.S.BONIFACINO,J.H.HURLEY                         
JRNL        TITL   FUNCTIONAL ARCHITECTURE OF THE RETROMER CARGO-RECOGNITION    
JRNL        TITL 2 COMPLEX.                                                     
JRNL        REF    NATURE                        V. 449  1063 2007              
JRNL        REFN                   ISSN 0028-0836                               
JRNL        PMID   17891154                                                     
JRNL        DOI    10.1038/NATURE06216                                          
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS                                                  
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : NULL                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : NULL                           
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : NULL                           
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 92.1                           
REMARK   3   NUMBER OF REFLECTIONS             : 27869                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : NULL                            
REMARK   3   FREE R VALUE TEST SET SELECTION  : NULL                            
REMARK   3   R VALUE            (WORKING SET) : 0.216                           
REMARK   3   FREE R VALUE                     : 0.268                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.600                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1390                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : NULL                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : NULL                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : NULL                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : NULL                         
REMARK   3   BIN FREE R VALUE                    : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : NULL                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : NULL                         
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : NULL                         
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 7579                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 12                                      
REMARK   3   SOLVENT ATOMS            : 49                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 54.73                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -23.69600                                            
REMARK   3    B22 (A**2) : 12.03200                                             
REMARK   3    B33 (A**2) : 11.66400                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : NULL                            
REMARK   3   ESD FROM SIGMAA              (A) : NULL                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : NULL                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : NULL                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : NULL                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.007                           
REMARK   3   BOND ANGLES            (DEGREES) : NULL                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : NULL                            
REMARK   3   IMPROPER ANGLES        (DEGREES) : NULL                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : NULL                                      
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.507 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.637 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 2.210 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 3.376 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : NULL                                                 
REMARK   3   KSOL        : NULL                                                 
REMARK   3   BSOL        : 25.75                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : CNS_TOPPAR:PROTEIN_REP.PARAM                   
REMARK   3  PARAMETER FILE  2  : CNS_TOPPAR:WATER_REP.PARAM                     
REMARK   3  PARAMETER FILE  3  : GOL.PARAM                                      
REMARK   3  PARAMETER FILE  4  : NULL                                           
REMARK   3  PARAMETER FILE  5  : NULL                                           
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : CNS_TOPPAR:PROTEIN.TOP                         
REMARK   3  TOPOLOGY FILE  2   : CNS_TOPPAR:DNA-RNA.TOP                         
REMARK   3  TOPOLOGY FILE  3   : CNS_TOPPAR:WATER.TOP                           
REMARK   3  TOPOLOGY FILE  4   : CNS_TOPPAR:ION.TOP                             
REMARK   3  TOPOLOGY FILE  5   : GOL.TOP                                        
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2R17 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-07.                  
REMARK 100 THE DEPOSITION ID IS D_1000044298.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : NULL                               
REMARK 200  TEMPERATURE           (KELVIN) : NULL                               
REMARK 200  PH                             : 8.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 22-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97926                            
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                        
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 29916                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.800                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.8                               
REMARK 200  DATA REDUNDANCY                : 13.50                              
REMARK 200  R MERGE                    (I) : 0.09500                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 11.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.90                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 91.7                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 9.80                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.33200                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD                          
REMARK 200 SOFTWARE USED: SOLVE                                                 
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 54.43                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 1M NACL,50MM TRIS, PH      
REMARK 280  8.0, HANGING DROP, TEMPERATURE 291K                                 
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       33.12500            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       70.22600            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       64.23550            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       70.22600            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       33.12500            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       64.23550            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1, 2                                                    
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A DIMER. THERE ARE 2 BIOLOGICAL       
REMARK 300 UNITS IN THE ASYMMETRIC UNIT (CHAINS A & C AND CHAINS B & D)         
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 2                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     ASP D   483                                                      
REMARK 465     SER D   679                                                      
REMARK 465     GLY D   680                                                      
REMARK 465     ARG D   681                                                      
REMARK 465     ASN D   682                                                      
REMARK 465     THR D   683                                                      
REMARK 465     ASP D   684                                                      
REMARK 465     LYS D   685                                                      
REMARK 465     ASN D   686                                                      
REMARK 465     GLY D   687                                                      
REMARK 465     GLU D   688                                                      
REMARK 465     GLU D   689                                                      
REMARK 465     LEU D   690                                                      
REMARK 465     HIS D   691                                                      
REMARK 465     GLY D   692                                                      
REMARK 465     GLY D   693                                                      
REMARK 465     LYS D   694                                                      
REMARK 465     GLU D   734                                                      
REMARK 465     ASN D   735                                                      
REMARK 465     ASP D   736                                                      
REMARK 465     ALA D   737                                                      
REMARK 465     VAL D   738                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    LYS C   544     CB   SER C   547              2.13            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASP A   8       48.75     38.04                                   
REMARK 500    THR A  37      -71.40    -77.91                                   
REMARK 500    CYS A  41      -64.47     75.56                                   
REMARK 500    ASP A  62        2.49    -65.87                                   
REMARK 500    ASP A 107       48.67     70.49                                   
REMARK 500    HIS A 115      -29.81     67.70                                   
REMARK 500    ASN A 126       13.69     59.86                                   
REMARK 500    PRO A 148      153.76    -47.87                                   
REMARK 500    SER A 149      158.05    172.22                                   
REMARK 500    GLN A 156      -65.98    -94.42                                   
REMARK 500    ALA A 157      111.20   -172.12                                   
REMARK 500    LYS A 181      147.95    -39.27                                   
REMARK 500    ASN B  39       40.35     77.72                                   
REMARK 500    CYS B  41      -53.38     87.25                                   
REMARK 500    ASN B  66       98.66    -66.34                                   
REMARK 500    HIS B 115      -35.35     74.96                                   
REMARK 500    ALA B 135        3.29    -67.59                                   
REMARK 500    SER B 149      149.42   -171.62                                   
REMARK 500    GLN B 156      -71.59    -94.26                                   
REMARK 500    ALA B 157      112.34   -179.60                                   
REMARK 500    SER B 158       18.62     59.80                                   
REMARK 500    ALA C 577      -64.12   -134.76                                   
REMARK 500    ASN C 598        5.10     86.64                                   
REMARK 500    GLU C 615      -73.50    -63.67                                   
REMARK 500    ASP C 712      124.53   -170.52                                   
REMARK 500    ASP C 736      -37.48    -35.02                                   
REMARK 500    ASP D 551       33.54    -85.42                                   
REMARK 500    ALA D 577      -56.55   -143.33                                   
REMARK 500    LYS D 639       35.08   -140.28                                   
REMARK 500    PHE D 677       42.58   -106.95                                   
REMARK 500    ASN D 756       71.53   -106.20                                   
REMARK 500    GLU D 758      141.30    -37.80                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1                   
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 2                   
DBREF  2R17 A    1   182  UNP    Q9UBQ0   VPS29_HUMAN      1    182             
DBREF  2R17 B    1   182  UNP    Q9UBQ0   VPS29_HUMAN      1    182             
DBREF  2R17 C  483   780  UNP    Q96QK1   VPS35_HUMAN    483    780             
DBREF  2R17 D  483   780  UNP    Q96QK1   VPS35_HUMAN    483    780             
SEQADV 2R17 MSE A    0  UNP  Q9UBQ0              INITIATING METHIONINE          
SEQADV 2R17 MSE B    0  UNP  Q9UBQ0              INITIATING METHIONINE          
SEQRES   1 A  183  MSE MSE LEU VAL LEU VAL LEU GLY ASP LEU HIS ILE PRO          
SEQRES   2 A  183  HIS ARG CYS ASN SER LEU PRO ALA LYS PHE LYS LYS LEU          
SEQRES   3 A  183  LEU VAL PRO GLY LYS ILE GLN HIS ILE LEU CYS THR GLY          
SEQRES   4 A  183  ASN LEU CYS THR LYS GLU SER TYR ASP TYR LEU LYS THR          
SEQRES   5 A  183  LEU ALA GLY ASP VAL HIS ILE VAL ARG GLY ASP PHE ASP          
SEQRES   6 A  183  GLU ASN LEU ASN TYR PRO GLU GLN LYS VAL VAL THR VAL          
SEQRES   7 A  183  GLY GLN PHE LYS ILE GLY LEU ILE HIS GLY HIS GLN VAL          
SEQRES   8 A  183  ILE PRO TRP GLY ASP MSE ALA SER LEU ALA LEU LEU GLN          
SEQRES   9 A  183  ARG GLN PHE ASP VAL ASP ILE LEU ILE SER GLY HIS THR          
SEQRES  10 A  183  HIS LYS PHE GLU ALA PHE GLU HIS GLU ASN LYS PHE TYR          
SEQRES  11 A  183  ILE ASN PRO GLY SER ALA THR GLY ALA TYR ASN ALA LEU          
SEQRES  12 A  183  GLU THR ASN ILE ILE PRO SER PHE VAL LEU MSE ASP ILE          
SEQRES  13 A  183  GLN ALA SER THR VAL VAL THR TYR VAL TYR GLN LEU ILE          
SEQRES  14 A  183  GLY ASP ASP VAL LYS VAL GLU ARG ILE GLU TYR LYS LYS          
SEQRES  15 A  183  PRO                                                          
SEQRES   1 B  183  MSE MSE LEU VAL LEU VAL LEU GLY ASP LEU HIS ILE PRO          
SEQRES   2 B  183  HIS ARG CYS ASN SER LEU PRO ALA LYS PHE LYS LYS LEU          
SEQRES   3 B  183  LEU VAL PRO GLY LYS ILE GLN HIS ILE LEU CYS THR GLY          
SEQRES   4 B  183  ASN LEU CYS THR LYS GLU SER TYR ASP TYR LEU LYS THR          
SEQRES   5 B  183  LEU ALA GLY ASP VAL HIS ILE VAL ARG GLY ASP PHE ASP          
SEQRES   6 B  183  GLU ASN LEU ASN TYR PRO GLU GLN LYS VAL VAL THR VAL          
SEQRES   7 B  183  GLY GLN PHE LYS ILE GLY LEU ILE HIS GLY HIS GLN VAL          
SEQRES   8 B  183  ILE PRO TRP GLY ASP MSE ALA SER LEU ALA LEU LEU GLN          
SEQRES   9 B  183  ARG GLN PHE ASP VAL ASP ILE LEU ILE SER GLY HIS THR          
SEQRES  10 B  183  HIS LYS PHE GLU ALA PHE GLU HIS GLU ASN LYS PHE TYR          
SEQRES  11 B  183  ILE ASN PRO GLY SER ALA THR GLY ALA TYR ASN ALA LEU          
SEQRES  12 B  183  GLU THR ASN ILE ILE PRO SER PHE VAL LEU MSE ASP ILE          
SEQRES  13 B  183  GLN ALA SER THR VAL VAL THR TYR VAL TYR GLN LEU ILE          
SEQRES  14 B  183  GLY ASP ASP VAL LYS VAL GLU ARG ILE GLU TYR LYS LYS          
SEQRES  15 B  183  PRO                                                          
SEQRES   1 C  298  ASP PHE ALA ASP GLU GLN SER LEU VAL GLY ARG PHE ILE          
SEQRES   2 C  298  HIS LEU LEU ARG SER GLU ASP PRO ASP GLN GLN TYR LEU          
SEQRES   3 C  298  ILE LEU ASN THR ALA ARG LYS HIS PHE GLY ALA GLY GLY          
SEQRES   4 C  298  ASN GLN ARG ILE ARG PHE THR LEU PRO PRO LEU VAL PHE          
SEQRES   5 C  298  ALA ALA TYR GLN LEU ALA PHE ARG TYR LYS GLU ASN SER          
SEQRES   6 C  298  LYS VAL ASP ASP LYS TRP GLU LYS LYS CYS GLN LYS ILE          
SEQRES   7 C  298  PHE SER PHE ALA HIS GLN THR ILE SER ALA LEU ILE LYS          
SEQRES   8 C  298  ALA GLU LEU ALA GLU LEU PRO LEU ARG LEU PHE LEU GLN          
SEQRES   9 C  298  GLY ALA LEU ALA ALA GLY GLU ILE GLY PHE GLU ASN HIS          
SEQRES  10 C  298  GLU THR VAL ALA TYR GLU PHE MSE SER GLN ALA PHE SER          
SEQRES  11 C  298  LEU TYR GLU ASP GLU ILE SER ASP SER LYS ALA GLN LEU          
SEQRES  12 C  298  ALA ALA ILE THR LEU ILE ILE GLY THR PHE GLU ARG MSE          
SEQRES  13 C  298  LYS CYS PHE SER GLU GLU ASN HIS GLU PRO LEU ARG THR          
SEQRES  14 C  298  GLN CYS ALA LEU ALA ALA SER LYS LEU LEU LYS LYS PRO          
SEQRES  15 C  298  ASP GLN GLY ARG ALA VAL SER THR CYS ALA HIS LEU PHE          
SEQRES  16 C  298  TRP SER GLY ARG ASN THR ASP LYS ASN GLY GLU GLU LEU          
SEQRES  17 C  298  HIS GLY GLY LYS ARG VAL MSE GLU CYS LEU LYS LYS ALA          
SEQRES  18 C  298  LEU LYS ILE ALA ASN GLN CYS MSE ASP PRO SER LEU GLN          
SEQRES  19 C  298  VAL GLN LEU PHE ILE GLU ILE LEU ASN ARG TYR ILE TYR          
SEQRES  20 C  298  PHE TYR GLU LYS GLU ASN ASP ALA VAL THR ILE GLN VAL          
SEQRES  21 C  298  LEU ASN GLN LEU ILE GLN LYS ILE ARG GLU ASP LEU PRO          
SEQRES  22 C  298  ASN LEU GLU SER SER GLU GLU THR GLU GLN ILE ASN LYS          
SEQRES  23 C  298  HIS PHE HIS ASN THR LEU GLU HIS LEU ARG LEU ARG              
SEQRES   1 D  298  ASP PHE ALA ASP GLU GLN SER LEU VAL GLY ARG PHE ILE          
SEQRES   2 D  298  HIS LEU LEU ARG SER GLU ASP PRO ASP GLN GLN TYR LEU          
SEQRES   3 D  298  ILE LEU ASN THR ALA ARG LYS HIS PHE GLY ALA GLY GLY          
SEQRES   4 D  298  ASN GLN ARG ILE ARG PHE THR LEU PRO PRO LEU VAL PHE          
SEQRES   5 D  298  ALA ALA TYR GLN LEU ALA PHE ARG TYR LYS GLU ASN SER          
SEQRES   6 D  298  LYS VAL ASP ASP LYS TRP GLU LYS LYS CYS GLN LYS ILE          
SEQRES   7 D  298  PHE SER PHE ALA HIS GLN THR ILE SER ALA LEU ILE LYS          
SEQRES   8 D  298  ALA GLU LEU ALA GLU LEU PRO LEU ARG LEU PHE LEU GLN          
SEQRES   9 D  298  GLY ALA LEU ALA ALA GLY GLU ILE GLY PHE GLU ASN HIS          
SEQRES  10 D  298  GLU THR VAL ALA TYR GLU PHE MSE SER GLN ALA PHE SER          
SEQRES  11 D  298  LEU TYR GLU ASP GLU ILE SER ASP SER LYS ALA GLN LEU          
SEQRES  12 D  298  ALA ALA ILE THR LEU ILE ILE GLY THR PHE GLU ARG MSE          
SEQRES  13 D  298  LYS CYS PHE SER GLU GLU ASN HIS GLU PRO LEU ARG THR          
SEQRES  14 D  298  GLN CYS ALA LEU ALA ALA SER LYS LEU LEU LYS LYS PRO          
SEQRES  15 D  298  ASP GLN GLY ARG ALA VAL SER THR CYS ALA HIS LEU PHE          
SEQRES  16 D  298  TRP SER GLY ARG ASN THR ASP LYS ASN GLY GLU GLU LEU          
SEQRES  17 D  298  HIS GLY GLY LYS ARG VAL MSE GLU CYS LEU LYS LYS ALA          
SEQRES  18 D  298  LEU LYS ILE ALA ASN GLN CYS MSE ASP PRO SER LEU GLN          
SEQRES  19 D  298  VAL GLN LEU PHE ILE GLU ILE LEU ASN ARG TYR ILE TYR          
SEQRES  20 D  298  PHE TYR GLU LYS GLU ASN ASP ALA VAL THR ILE GLN VAL          
SEQRES  21 D  298  LEU ASN GLN LEU ILE GLN LYS ILE ARG GLU ASP LEU PRO          
SEQRES  22 D  298  ASN LEU GLU SER SER GLU GLU THR GLU GLN ILE ASN LYS          
SEQRES  23 D  298  HIS PHE HIS ASN THR LEU GLU HIS LEU ARG LEU ARG              
MODRES 2R17 MSE A    0  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE A    1  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE A   96  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE A  153  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE B    0  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE B    1  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE B   96  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE B  153  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE C  607  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE C  638  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE C  697  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE C  711  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE D  607  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE D  638  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE D  697  MET  SELENOMETHIONINE                                   
MODRES 2R17 MSE D  711  MET  SELENOMETHIONINE                                   
HET    MSE  A   0       8                                                       
HET    MSE  A   1       8                                                       
HET    MSE  A  96       8                                                       
HET    MSE  A 153       8                                                       
HET    MSE  B   0       8                                                       
HET    MSE  B   1       8                                                       
HET    MSE  B  96       8                                                       
HET    MSE  B 153       8                                                       
HET    MSE  C 607       8                                                       
HET    MSE  C 638       8                                                       
HET    MSE  C 697       8                                                       
HET    MSE  C 711       8                                                       
HET    MSE  D 607       8                                                       
HET    MSE  D 638       8                                                       
HET    MSE  D 697       8                                                       
HET    MSE  D 711       8                                                       
HET    GOL  D   1       6                                                       
HET    GOL  D   2       6                                                       
HETNAM     MSE SELENOMETHIONINE                                                 
HETNAM     GOL GLYCEROL                                                         
HETSYN     GOL GLYCERIN; PROPANE-1,2,3-TRIOL                                    
FORMUL   1  MSE    16(C5 H11 N O2 SE)                                           
FORMUL   5  GOL    2(C3 H8 O3)                                                  
FORMUL   7  HOH   *49(H2 O)                                                     
HELIX    1   1 PRO A   19  LEU A   26  1                                   8    
HELIX    2   2 THR A   42  ALA A   53  1                                  12    
HELIX    3   3 ASP A   95  ASP A  107  1                                  13    
HELIX    4   4 PRO B   19  LEU B   26  1                                   8    
HELIX    5   5 THR B   42  ALA B   53  1                                  12    
HELIX    6   6 ASP B   95  ASP B  107  1                                  13    
HELIX    7   7 GLU C  487  ARG C  499  1                                  13    
HELIX    8   8 ASP C  502  ALA C  519  1                                  18    
HELIX    9   9 ARG C  524  GLU C  545  1                                  22    
HELIX   10  10 LYS C  552  ALA C  574  1                                  23    
HELIX   11  11 ALA C  577  GLY C  595  1                                  19    
HELIX   12  12 ASN C  598  ILE C  618  1                                  21    
HELIX   13  13 ASP C  620  GLU C  636  1                                  17    
HELIX   14  14 SER C  642  LYS C  659  1                                  18    
HELIX   15  15 LYS C  662  CYS C  673  1                                  12    
HELIX   16  16 CYS C  673  SER C  679  1                                   7    
HELIX   17  17 GLY C  692  CYS C  710  1                                  19    
HELIX   18  18 ASP C  712  GLU C  732  1                                  21    
HELIX   19  19 THR C  739  GLU C  752  1                                  14    
HELIX   20  20 SER C  760  LEU C  777  1                                  18    
HELIX   21  21 PHE D  484  LEU D  498  1                                  15    
HELIX   22  22 ASP D  502  GLY D  518  1                                  17    
HELIX   23  23 ARG D  524  LEU D  529  1                                   6    
HELIX   24  24 LEU D  529  ASN D  546  1                                  18    
HELIX   25  25 SER D  547  VAL D  549  5                                   3    
HELIX   26  26 LYS D  552  ALA D  574  1                                  23    
HELIX   27  27 ALA D  577  GLY D  595  1                                  19    
HELIX   28  28 ASN D  598  ILE D  618  1                                  21    
HELIX   29  29 ASP D  620  MSE D  638  1                                  19    
HELIX   30  30 SER D  642  LEU D  660  1                                  19    
HELIX   31  31 LYS D  662  ALA D  674  1                                  13    
HELIX   32  32 HIS D  675  TRP D  678  5                                   4    
HELIX   33  33 ARG D  695  GLN D  709  1                                  15    
HELIX   34  34 ASP D  712  GLU D  732  1                                  21    
HELIX   35  35 GLN D  741  LEU D  754  1                                  14    
HELIX   36  36 SER D  760  LEU D  777  1                                  18    
SHEET    1   A 6 VAL A  56  ILE A  58  0                                        
SHEET    2   A 6 HIS A  33  CYS A  36  1  N  CYS A  36   O  HIS A  57           
SHEET    3   A 6 MSE A   1  LEU A   6  1  N  LEU A   4   O  LEU A  35           
SHEET    4   A 6 SER A 149  ILE A 155 -1  O  ILE A 155   N  MSE A   1           
SHEET    5   A 6 VAL A 160  GLN A 166 -1  O  TYR A 165   N  PHE A 150           
SHEET    6   A 6 LYS A 173  TYR A 179 -1  O  TYR A 179   N  VAL A 160           
SHEET    1   B 5 GLN A  72  VAL A  77  0                                        
SHEET    2   B 5 PHE A  80  ILE A  85 -1  O  PHE A  80   N  VAL A  77           
SHEET    3   B 5 ILE A 110  ILE A 112  1  O  ILE A 110   N  GLY A  83           
SHEET    4   B 5 LYS A 127  ASN A 131  1  O  PHE A 128   N  LEU A 111           
SHEET    5   B 5 GLU A 120  HIS A 124 -1  N  PHE A 122   O  TYR A 129           
SHEET    1   C 6 ASP B  55  ILE B  58  0                                        
SHEET    2   C 6 HIS B  33  CYS B  36  1  N  CYS B  36   O  HIS B  57           
SHEET    3   C 6 MSE B   1  LEU B   6  1  N  LEU B   4   O  HIS B  33           
SHEET    4   C 6 SER B 149  ILE B 155 -1  O  VAL B 151   N  VAL B   5           
SHEET    5   C 6 THR B 159  ILE B 168 -1  O  TYR B 165   N  PHE B 150           
SHEET    6   C 6 ASP B 171  LYS B 180 -1  O  ILE B 177   N  THR B 162           
SHEET    1   D 5 GLN B  72  VAL B  77  0                                        
SHEET    2   D 5 PHE B  80  ILE B  85 -1  O  LEU B  84   N  LYS B  73           
SHEET    3   D 5 ILE B 110  ILE B 112  1  O  ILE B 112   N  GLY B  83           
SHEET    4   D 5 LYS B 127  ASN B 131  1  O  PHE B 128   N  LEU B 111           
SHEET    5   D 5 GLU B 120  HIS B 124 -1  N  GLU B 120   O  ASN B 131           
LINK         C   MSE A   0                 N   MSE A   1     1555   1555  1.33  
LINK         C   MSE A   1                 N   LEU A   2     1555   1555  1.34  
LINK         C   ASP A  95                 N   MSE A  96     1555   1555  1.33  
LINK         C   MSE A  96                 N   ALA A  97     1555   1555  1.33  
LINK         C   LEU A 152                 N   MSE A 153     1555   1555  1.33  
LINK         C   MSE A 153                 N   ASP A 154     1555   1555  1.33  
LINK         C   MSE B   0                 N   MSE B   1     1555   1555  1.33  
LINK         C   MSE B   1                 N   LEU B   2     1555   1555  1.34  
LINK         C   ASP B  95                 N   MSE B  96     1555   1555  1.33  
LINK         C   MSE B  96                 N   ALA B  97     1555   1555  1.33  
LINK         C   LEU B 152                 N   MSE B 153     1555   1555  1.33  
LINK         C   MSE B 153                 N   ASP B 154     1555   1555  1.34  
LINK         C   PHE C 606                 N   MSE C 607     1555   1555  1.33  
LINK         C   MSE C 607                 N   SER C 608     1555   1555  1.33  
LINK         C   ARG C 637                 N   MSE C 638     1555   1555  1.33  
LINK         C   MSE C 638                 N   LYS C 639     1555   1555  1.33  
LINK         C   VAL C 696                 N   MSE C 697     1555   1555  1.33  
LINK         C   MSE C 697                 N   GLU C 698     1555   1555  1.33  
LINK         C   CYS C 710                 N   MSE C 711     1555   1555  1.33  
LINK         C   MSE C 711                 N   ASP C 712     1555   1555  1.32  
LINK         C   PHE D 606                 N   MSE D 607     1555   1555  1.34  
LINK         C   MSE D 607                 N   SER D 608     1555   1555  1.32  
LINK         C   ARG D 637                 N   MSE D 638     1555   1555  1.32  
LINK         C   MSE D 638                 N   LYS D 639     1555   1555  1.33  
LINK         C   VAL D 696                 N   MSE D 697     1555   1555  1.33  
LINK         C   MSE D 697                 N   GLU D 698     1555   1555  1.33  
LINK         C   CYS D 710                 N   MSE D 711     1555   1555  1.33  
LINK         C   MSE D 711                 N   ASP D 712     1555   1555  1.33  
CISPEP   1 ILE A   11    PRO A   12          0         0.02                     
CISPEP   2 ILE A   91    PRO A   92          0         0.20                     
CISPEP   3 ILE B   11    PRO B   12          0         0.18                     
CISPEP   4 ILE B   91    PRO B   92          0        -0.11                     
SITE     1 AC1  3 ALA D 577  GLU D 578  LEU D 579                               
SITE     1 AC2  2 HOH C 787  ASN D 744                                          
CRYST1   66.250  128.471  140.452  90.00  90.00  90.00 P 21 21 21    8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.015094  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.007784  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.007120        0.00000                         
HETATM    1  N   MSE A   0     -20.128  43.807  99.859  1.00 99.60           N  
HETATM    2  CA  MSE A   0     -18.746  43.996 100.392  1.00100.35           C  
HETATM    3  C   MSE A   0     -18.309  42.768 101.207  1.00 98.54           C  
HETATM    4  O   MSE A   0     -18.768  42.553 102.328  1.00 97.97           O  
HETATM    5  CB  MSE A   0     -18.691  45.249 101.263  1.00103.86           C  
HETATM    6  CG  MSE A   0     -18.309  44.940 102.692  1.00109.72           C  
HETATM    7 SE   MSE A   0     -17.582  46.381 103.694  1.00120.85          SE  
HETATM    8  CE  MSE A   0     -18.350  45.962 105.429  1.00115.11           C  
HETATM    9  N   MSE A   1     -17.392  41.984 100.647  1.00 97.26           N  
HETATM   10  CA  MSE A   1     -16.927  40.750 101.285  1.00 95.93           C  
HETATM   11  C   MSE A   1     -15.534  40.727 101.935  1.00 92.57           C  
HETATM   12  O   MSE A   1     -14.590  41.361 101.454  1.00 91.96           O  
HETATM   13  CB  MSE A   1     -17.013  39.613 100.260  1.00 99.51           C  
HETATM   14  CG  MSE A   1     -16.249  39.892  98.958  1.00104.00           C  
HETATM   15 SE   MSE A   1     -17.069  41.191  97.742  1.00112.31          SE  
HETATM   16  CE  MSE A   1     -17.637  39.966  96.348  1.00108.40           C