PDB Short entry for 2R2P HEADER TRANSFERASE 27-AUG-07 2R2P TITLE KINASE DOMAIN OF HUMAN EPHRIN TYPE-A RECEPTOR 5 (EPHA5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN: RESIDUES 653-939; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR EHK-1, EPH HOMOLOGY KINASE COMPND 6 1, RECEPTOR PROTEIN-TYROSINE KINASE HEK7; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA5, EHK1, HEK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, RECEPTOR, TRANSFERASE, KEYWDS 2 PHOSPHORYLATION, TRANSMEMBRANE, TYROSINE-PROTEIN KINASE, ALTERNATIVE KEYWDS 3 SPLICING, GLYCOPROTEIN, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,D.CUERRIER,C.BUTLER-COLE,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 3 30-AUG-23 2R2P 1 SEQADV REVDAT 2 24-FEB-09 2R2P 1 VERSN REVDAT 1 25-SEP-07 2R2P 0 JRNL AUTH J.R.WALKER,D.CUERRIER,C.BUTLER-COLE,J.WEIGELT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON JRNL TITL KINASE DOMAIN OF HUMAN EPHRIN TYPE-A RECEPTOR 5 (EPHA5). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 12435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 883 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2216 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.416 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.299 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.918 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2292 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3109 ; 1.323 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 5.991 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;31.612 ;23.627 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;16.431 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;21.511 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1727 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1030 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1553 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 87 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1450 ; 0.459 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2274 ; 0.757 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 966 ; 1.377 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 835 ; 2.131 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 662 A 687 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9149 51.9933 -2.9952 REMARK 3 T TENSOR REMARK 3 T11: 0.2213 T22: 0.2272 REMARK 3 T33: 0.1963 T12: 0.0027 REMARK 3 T13: -0.1066 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 13.1340 L22: 10.4149 REMARK 3 L33: 7.8476 L12: -4.9383 REMARK 3 L13: -3.3656 L23: 1.3386 REMARK 3 S TENSOR REMARK 3 S11: 0.4001 S12: 1.3299 S13: 0.1906 REMARK 3 S21: -0.5848 S22: -0.5219 S23: 0.6881 REMARK 3 S31: -0.5108 S32: -0.8263 S33: 0.1218 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 688 A 700 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1164 52.1439 0.9272 REMARK 3 T TENSOR REMARK 3 T11: 0.1720 T22: 0.0377 REMARK 3 T33: 0.1641 T12: -0.0210 REMARK 3 T13: 0.0258 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 6.8017 L22: 12.6798 REMARK 3 L33: 21.3022 L12: 4.3070 REMARK 3 L13: 0.1103 L23: 8.1640 REMARK 3 S TENSOR REMARK 3 S11: -0.2618 S12: 0.0740 S13: 0.1953 REMARK 3 S21: -0.4610 S22: -0.2049 S23: -0.4984 REMARK 3 S31: -0.8154 S32: 0.3934 S33: 0.4666 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 701 A 712 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1889 50.0991 -4.8551 REMARK 3 T TENSOR REMARK 3 T11: 0.2733 T22: 0.2392 REMARK 3 T33: 0.0395 T12: -0.0547 REMARK 3 T13: 0.0282 T23: 0.0861 REMARK 3 L TENSOR REMARK 3 L11: 38.5694 L22: 7.5413 REMARK 3 L33: 25.3101 L12: -2.5805 REMARK 3 L13: 22.2048 L23: 2.0958 REMARK 3 S TENSOR REMARK 3 S11: -0.6436 S12: 2.1721 S13: 0.5256 REMARK 3 S21: -1.1563 S22: 0.5043 S23: 0.2790 REMARK 3 S31: -1.0745 S32: 0.5044 S33: 0.1393 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 713 A 729 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3996 49.4055 -4.0447 REMARK 3 T TENSOR REMARK 3 T11: 0.2813 T22: 0.5893 REMARK 3 T33: 0.6008 T12: -0.1951 REMARK 3 T13: -0.1451 T23: 0.1419 REMARK 3 L TENSOR REMARK 3 L11: 5.1029 L22: 13.2363 REMARK 3 L33: 30.4264 L12: 2.8677 REMARK 3 L13: -2.5264 L23: -12.4456 REMARK 3 S TENSOR REMARK 3 S11: -0.9440 S12: 1.3378 S13: 0.1114 REMARK 3 S21: -1.2925 S22: 1.4845 S23: 1.9209 REMARK 3 S31: 0.2475 S32: -1.7728 S33: -0.5405 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 730 A 766 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5363 43.4149 1.6235 REMARK 3 T TENSOR REMARK 3 T11: 0.0573 T22: 0.1574 REMARK 3 T33: 0.0686 T12: -0.0618 REMARK 3 T13: -0.0086 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.6753 L22: 5.7058 REMARK 3 L33: 2.4142 L12: -1.4648 REMARK 3 L13: -0.7366 L23: -0.8582 REMARK 3 S TENSOR REMARK 3 S11: 0.1782 S12: 0.2645 S13: 0.2607 REMARK 3 S21: -0.2258 S22: -0.1734 S23: -0.0327 REMARK 3 S31: -0.3065 S32: -0.2217 S33: -0.0048 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 767 A 792 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9970 27.0481 8.2241 REMARK 3 T TENSOR REMARK 3 T11: -0.0026 T22: 0.0360 REMARK 3 T33: 0.0198 T12: -0.0415 REMARK 3 T13: 0.0086 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 6.3288 L22: 6.2565 REMARK 3 L33: 2.2222 L12: -3.3367 REMARK 3 L13: 1.3124 L23: 1.1904 REMARK 3 S TENSOR REMARK 3 S11: 0.2760 S12: -0.1819 S13: -0.2606 REMARK 3 S21: -0.0346 S22: -0.0271 S23: -0.1085 REMARK 3 S31: -0.2307 S32: 0.3950 S33: -0.2489 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 793 A 803 REMARK 3 ORIGIN FOR THE GROUP (A): -20.5417 34.9219 6.0715 REMARK 3 T TENSOR REMARK 3 T11: 0.0202 T22: 0.0148 REMARK 3 T33: 0.1073 T12: 0.0347 REMARK 3 T13: 0.0091 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.4842 L22: 5.1564 REMARK 3 L33: 12.5993 L12: 1.4709 REMARK 3 L13: -2.0573 L23: 5.6150 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: -0.8559 S13: 1.1696 REMARK 3 S21: 0.2163 S22: 0.4896 S23: 0.1728 REMARK 3 S31: -0.3638 S32: 0.3140 S33: -0.4614 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 804 A 814 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8671 33.3716 3.0194 REMARK 3 T TENSOR REMARK 3 T11: -0.0163 T22: 0.0505 REMARK 3 T33: 0.0451 T12: -0.0812 REMARK 3 T13: 0.0623 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 14.2510 L22: 6.0965 REMARK 3 L33: 16.9298 L12: -3.2594 REMARK 3 L13: 6.8799 L23: -1.5100 REMARK 3 S TENSOR REMARK 3 S11: 0.2944 S12: 0.1232 S13: 0.5651 REMARK 3 S21: 0.0961 S22: -0.2269 S23: -0.0258 REMARK 3 S31: 0.3634 S32: 0.6130 S33: -0.0674 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 815 A 824 REMARK 3 ORIGIN FOR THE GROUP (A): -18.6620 38.3847 2.8034 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.2009 REMARK 3 T33: 0.2463 T12: -0.0036 REMARK 3 T13: -0.0510 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 49.3390 L22: 4.3132 REMARK 3 L33: 0.5382 L12: -2.1758 REMARK 3 L13: 2.1676 L23: -1.4623 REMARK 3 S TENSOR REMARK 3 S11: 0.6483 S12: 0.8777 S13: 2.4487 REMARK 3 S21: -0.7284 S22: 0.1943 S23: 0.7059 REMARK 3 S31: -0.0119 S32: -0.0845 S33: -0.8427 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 825 A 841 REMARK 3 ORIGIN FOR THE GROUP (A): -31.3398 34.7258 3.7951 REMARK 3 T TENSOR REMARK 3 T11: 0.2809 T22: 0.5661 REMARK 3 T33: 0.5251 T12: -0.1026 REMARK 3 T13: -0.0209 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 9.7379 L22: 19.3559 REMARK 3 L33: 5.0019 L12: -8.8485 REMARK 3 L13: 6.3683 L23: -2.7086 REMARK 3 S TENSOR REMARK 3 S11: 0.2681 S12: 0.3252 S13: -0.0583 REMARK 3 S21: -0.2554 S22: -0.2191 S23: 0.7755 REMARK 3 S31: -1.8912 S32: -2.8274 S33: -0.0490 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 842 A 853 REMARK 3 ORIGIN FOR THE GROUP (A): -27.2954 24.6056 -0.9046 REMARK 3 T TENSOR REMARK 3 T11: 0.0744 T22: 0.0031 REMARK 3 T33: 0.0921 T12: -0.0270 REMARK 3 T13: -0.0205 T23: 0.0721 REMARK 3 L TENSOR REMARK 3 L11: 41.7672 L22: 0.3336 REMARK 3 L33: 9.5932 L12: -3.7048 REMARK 3 L13: -19.6153 L23: 1.7836 REMARK 3 S TENSOR REMARK 3 S11: -0.6043 S12: 0.7502 S13: 0.2194 REMARK 3 S21: -0.4326 S22: 0.4340 S23: 0.0969 REMARK 3 S31: 0.2227 S32: -0.5289 S33: 0.1703 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 854 A 873 REMARK 3 ORIGIN FOR THE GROUP (A): -18.2265 24.3031 4.7096 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: -0.0009 REMARK 3 T33: -0.0389 T12: -0.0253 REMARK 3 T13: -0.0114 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 6.3823 L22: 2.8109 REMARK 3 L33: 2.4926 L12: 0.6681 REMARK 3 L13: -0.4864 L23: -0.2528 REMARK 3 S TENSOR REMARK 3 S11: 0.0347 S12: 0.0191 S13: -0.1157 REMARK 3 S21: 0.1433 S22: 0.0675 S23: 0.0591 REMARK 3 S31: -0.0962 S32: 0.0064 S33: -0.1022 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 874 A 896 REMARK 3 ORIGIN FOR THE GROUP (A): -19.9800 16.1601 -5.1138 REMARK 3 T TENSOR REMARK 3 T11: 0.0371 T22: 0.0938 REMARK 3 T33: 0.0885 T12: 0.0191 REMARK 3 T13: -0.0373 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.9232 L22: 3.4701 REMARK 3 L33: 6.7671 L12: 0.3496 REMARK 3 L13: 0.7981 L23: 2.8033 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: 0.5990 S13: -0.2662 REMARK 3 S21: -0.4198 S22: -0.1172 S23: 0.1570 REMARK 3 S31: 0.1472 S32: -0.7236 S33: 0.0971 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 897 A 912 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1728 13.5390 6.9804 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.0695 REMARK 3 T33: 0.1107 T12: -0.0001 REMARK 3 T13: -0.0343 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 5.6273 L22: 10.9660 REMARK 3 L33: 5.1240 L12: 1.0154 REMARK 3 L13: 5.2113 L23: -0.8517 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.0791 S13: -0.5453 REMARK 3 S21: 0.0976 S22: 0.1555 S23: -0.6249 REMARK 3 S31: 0.0291 S32: 0.6518 S33: -0.1746 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 913 A 920 REMARK 3 ORIGIN FOR THE GROUP (A): -25.3681 19.0049 9.6745 REMARK 3 T TENSOR REMARK 3 T11: 0.0043 T22: 0.0584 REMARK 3 T33: 0.0700 T12: 0.0020 REMARK 3 T13: -0.0392 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 27.9975 L22: 10.8032 REMARK 3 L33: 3.6949 L12: -6.3268 REMARK 3 L13: -5.5153 L23: 4.4957 REMARK 3 S TENSOR REMARK 3 S11: -0.0502 S12: -0.4947 S13: -0.9033 REMARK 3 S21: -0.0329 S22: -0.0673 S23: 1.0521 REMARK 3 S31: 0.1713 S32: -0.4369 S33: 0.1175 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 921 A 946 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9468 20.7252 17.1504 REMARK 3 T TENSOR REMARK 3 T11: 0.1391 T22: 0.1219 REMARK 3 T33: 0.0975 T12: -0.0507 REMARK 3 T13: -0.0659 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 19.0599 L22: 0.2934 REMARK 3 L33: 2.8898 L12: -1.3537 REMARK 3 L13: 6.8086 L23: -0.1831 REMARK 3 S TENSOR REMARK 3 S11: 0.2585 S12: -0.5529 S13: -0.6912 REMARK 3 S21: 0.1763 S22: 0.1081 S23: -0.1247 REMARK 3 S31: 0.1642 S32: 0.0943 S33: -0.3666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS, ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS REMARK 4 REMARK 4 2R2P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL AND K-B PAIR OF REMARK 200 BIOMORPH MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.87000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GSF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 2% PEG 400, 0.1M REMARK 280 HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.82467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.41233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.61850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.20617 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 141.03083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 112.82467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 56.41233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.20617 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 84.61850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 141.03083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 652 REMARK 465 PRO A 653 REMARK 465 HIS A 654 REMARK 465 THR A 655 REMARK 465 TYR A 656 REMARK 465 GLU A 657 REMARK 465 ASP A 658 REMARK 465 PRO A 659 REMARK 465 ASN A 660 REMARK 465 GLN A 661 REMARK 465 GLU A 830 REMARK 465 GLY A 837 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 665 CG CD OE1 OE2 REMARK 470 LYS A 668 CD CE NZ REMARK 470 LYS A 710 CG CD CE NZ REMARK 470 LYS A 716 CG CD CE NZ REMARK 470 ARG A 718 NE CZ NH1 NH2 REMARK 470 ARG A 719 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 747 CG CD CE NZ REMARK 470 ASP A 827 CG OD1 OD2 REMARK 470 LYS A 839 CG CD CE NZ REMARK 470 LYS A 889 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 799 -15.97 82.01 REMARK 500 ASP A 818 82.79 51.54 REMARK 500 TRP A 880 -126.49 48.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 2R2P A 653 939 UNP P54756 EPHA5_HUMAN 653 939 SEQADV 2R2P MET A 652 UNP P54756 EXPRESSION TAG SEQADV 2R2P ALA A 940 UNP P54756 EXPRESSION TAG SEQADV 2R2P HIS A 941 UNP P54756 EXPRESSION TAG SEQADV 2R2P HIS A 942 UNP P54756 EXPRESSION TAG SEQADV 2R2P HIS A 943 UNP P54756 EXPRESSION TAG SEQADV 2R2P HIS A 944 UNP P54756 EXPRESSION TAG SEQADV 2R2P HIS A 945 UNP P54756 EXPRESSION TAG SEQADV 2R2P HIS A 946 UNP P54756 EXPRESSION TAG SEQRES 1 A 295 MET PRO HIS THR TYR GLU ASP PRO ASN GLN ALA VAL HIS SEQRES 2 A 295 GLU PHE ALA LYS GLU ILE GLU ALA SER CYS ILE THR ILE SEQRES 3 A 295 GLU ARG VAL ILE GLY ALA GLY GLU PHE GLY GLU VAL CYS SEQRES 4 A 295 SER GLY ARG LEU LYS LEU PRO GLY LYS ARG GLU LEU PRO SEQRES 5 A 295 VAL ALA ILE LYS THR LEU LYS VAL GLY TYR THR GLU LYS SEQRES 6 A 295 GLN ARG ARG ASP PHE LEU GLY GLU ALA SER ILE MET GLY SEQRES 7 A 295 GLN PHE ASP HIS PRO ASN ILE ILE HIS LEU GLU GLY VAL SEQRES 8 A 295 VAL THR LYS SER LYS PRO VAL MET ILE VAL THR GLU TYR SEQRES 9 A 295 MET GLU ASN GLY SER LEU ASP THR PHE LEU LYS LYS ASN SEQRES 10 A 295 ASP GLY GLN PHE THR VAL ILE GLN LEU VAL GLY MET LEU SEQRES 11 A 295 ARG GLY ILE SER ALA GLY MET LYS TYR LEU SER ASP MET SEQRES 12 A 295 GLY TYR VAL HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU SEQRES 13 A 295 ILE ASN SER ASN LEU VAL CYS LYS VAL SER ASP PHE GLY SEQRES 14 A 295 LEU SER ARG VAL LEU GLU ASP ASP PRO GLU ALA ALA TYR SEQRES 15 A 295 THR THR ARG GLY GLY LYS ILE PRO ILE ARG TRP THR ALA SEQRES 16 A 295 PRO GLU ALA ILE ALA PHE ARG LYS PHE THR SER ALA SER SEQRES 17 A 295 ASP VAL TRP SER TYR GLY ILE VAL MET TRP GLU VAL VAL SEQRES 18 A 295 SER TYR GLY GLU ARG PRO TYR TRP GLU MET THR ASN GLN SEQRES 19 A 295 ASP VAL ILE LYS ALA VAL GLU GLU GLY TYR ARG LEU PRO SEQRES 20 A 295 SER PRO MET ASP CYS PRO ALA ALA LEU TYR GLN LEU MET SEQRES 21 A 295 LEU ASP CYS TRP GLN LYS GLU ARG ASN SER ARG PRO LYS SEQRES 22 A 295 PHE ASP GLU ILE VAL ASN MET LEU ASP LYS LEU ILE ARG SEQRES 23 A 295 ASN PRO ALA HIS HIS HIS HIS HIS HIS HET SO4 A 1 5 HET SO4 A 2 5 HET SO4 A 3 5 HET SO4 A 4 5 HET CL A 5 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 CL CL 1- FORMUL 7 HOH *66(H2 O) HELIX 1 1 ALA A 662 PHE A 666 5 5 HELIX 2 2 GLU A 671 SER A 673 5 3 HELIX 3 3 THR A 714 GLY A 729 1 16 HELIX 4 4 SER A 760 LYS A 767 1 8 HELIX 5 5 THR A 773 MET A 794 1 22 HELIX 6 6 ALA A 802 ARG A 804 5 3 HELIX 7 7 PRO A 841 THR A 845 5 5 HELIX 8 8 ALA A 846 ARG A 853 1 8 HELIX 9 9 THR A 856 SER A 873 1 18 HELIX 10 10 THR A 883 GLY A 894 1 12 HELIX 11 11 PRO A 904 TRP A 915 1 12 HELIX 12 12 GLU A 918 ARG A 922 5 5 HELIX 13 13 LYS A 924 ARG A 937 1 14 HELIX 14 14 ASN A 938 HIS A 942 5 5 SHEET 1 A 5 ILE A 675 ALA A 683 0 SHEET 2 A 5 GLU A 688 LEU A 694 -1 O ARG A 693 N THR A 676 SHEET 3 A 5 LEU A 702 THR A 708 -1 O LEU A 702 N LEU A 694 SHEET 4 A 5 MET A 750 GLU A 754 -1 O THR A 753 N ALA A 705 SHEET 5 A 5 LEU A 739 VAL A 743 -1 N GLY A 741 O VAL A 752 SHEET 1 B 2 TYR A 796 VAL A 797 0 SHEET 2 B 2 ARG A 823 VAL A 824 -1 O ARG A 823 N VAL A 797 SHEET 1 C 2 ILE A 806 ILE A 808 0 SHEET 2 C 2 CYS A 814 VAL A 816 -1 O LYS A 815 N LEU A 807 SHEET 1 D 2 TYR A 833 THR A 834 0 SHEET 2 D 2 LYS A 854 PHE A 855 -1 O PHE A 855 N TYR A 833 CISPEP 1 LYS A 747 PRO A 748 0 -2.70 CRYST1 80.085 80.085 169.237 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012487 0.007209 0.000000 0.00000 SCALE2 0.000000 0.014418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005909 0.00000