PDB Short entry for 2RDJ HEADER TRANSFERASE/DNA 24-SEP-07 2RDJ TITLE SNAPSHOTS OF A Y-FAMILY DNA POLYMERASE IN REPLICATION: DPO4 IN APO AND TITLE 2 BINARY/TERNARY COMPLEX FORMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3'); COMPND 4 CHAIN: C, E; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*DTP*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)- COMPND 10 3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: DNA TEMPLATE STRAND FROM POLYPEPTIDE CHAIN A; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'- COMPND 16 D(P*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3'); COMPND 17 CHAIN: F; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: DNA TEMPLATE STRAND FROM POLYPEPTIDE CHAIN B; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: DNA POLYMERASE IV; COMPND 22 CHAIN: A, B; COMPND 23 SYNONYM: POL IV; COMPND 24 EC: 2.7.7.7; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES; SOURCE 7 MOL_ID: 4; SOURCE 8 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 9 STRAIN: P2; SOURCE 10 GENE: DBH, DPO4; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS DNA POLYMERASE, DNA-ENZYME COMPLEX, Y-FAMILY, DNA DAMAGE, DNA REPAIR, KEYWDS 2 DNA REPLICATION, DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, KEYWDS 3 MAGNESIUM, METAL-BINDING, MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, KEYWDS 4 TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.H.Y.WONG,H.LING REVDAT 6 30-AUG-23 2RDJ 1 REMARK DBREF LINK REVDAT 5 11-OCT-17 2RDJ 1 REMARK REVDAT 4 13-JUL-11 2RDJ 1 VERSN REVDAT 3 24-FEB-09 2RDJ 1 VERSN REVDAT 2 01-JUL-08 2RDJ 1 REMARK REVDAT 1 24-JUN-08 2RDJ 0 JRNL AUTH J.H.WONG,K.A.FIALA,Z.SUO,H.LING JRNL TITL SNAPSHOTS OF A Y-FAMILY DNA POLYMERASE IN REPLICATION: JRNL TITL 2 SUBSTRATE-INDUCED CONFORMATIONAL TRANSITIONS AND JRNL TITL 3 IMPLICATIONS FOR FIDELITY OF DPO4. JRNL REF J.MOL.BIOL. V. 379 317 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18448122 JRNL DOI 10.1016/J.JMB.2008.03.038 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 51924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5486 REMARK 3 NUCLEIC ACID ATOMS : 1202 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.55000 REMARK 3 B22 (A**2) : -1.66000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6948 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9576 ; 1.502 ; 2.213 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 5.554 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;31.202 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1126 ;15.631 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;16.448 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1093 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4637 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2872 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4645 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 460 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.152 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.151 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3553 ; 0.678 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5520 ; 1.115 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4237 ; 1.744 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4056 ; 2.756 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRADED MULTILAYER (OSMIC) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51948 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1JX4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG3350, 0.2M CALCIUM ACETATE, REMARK 280 0.1M HEPES PH 7.0, 5% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.99650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.05450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.05450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.99650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS CHAIN A ALONE OR CHAIN B ALONE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 342 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 GLU B 342 REMARK 465 ALA B 343 REMARK 465 ILE B 344 REMARK 465 GLY B 345 REMARK 465 LEU B 346 REMARK 465 ASP B 347 REMARK 465 LYS B 348 REMARK 465 PHE B 349 REMARK 465 PHE B 350 REMARK 465 ASP B 351 REMARK 465 THR B 352 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC F 8 O3' DC F 8 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 4 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 10 N1 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 DA C 12 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 13 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 3 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 3 N3 - C2 - O2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA D 10 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG D 12 O4' - C1' - N9 ANGL. DEV. = 9.9 DEGREES REMARK 500 DG D 13 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG D 14 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC D 16 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 DC D 17 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC D 18 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG E 2 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG E 3 C5 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC E 5 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC E 5 N1 - C2 - O2 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC E 7 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC E 10 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 DG E 11 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 DA E 12 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DA E 12 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT E 14 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT F 4 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT F 6 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC F 8 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DA F 10 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA F 11 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DG F 12 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT F 15 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 58.63 26.53 REMARK 500 SER A 103 -171.75 -173.20 REMARK 500 SER A 145 -162.74 -168.39 REMARK 500 LYS A 196 0.47 -68.53 REMARK 500 ASN A 234 47.70 -157.84 REMARK 500 ASP A 277 -112.92 62.94 REMARK 500 TYR B 10 56.93 38.08 REMARK 500 ASN B 20 78.03 -152.14 REMARK 500 PHE B 37 -157.44 -163.90 REMARK 500 SER B 145 -160.90 -163.92 REMARK 500 ASN B 234 45.56 -154.24 REMARK 500 ASP B 277 -104.61 54.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 354 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 17 O REMARK 620 2 ALA A 181 O 170.4 REMARK 620 3 ILE A 186 O 93.6 85.8 REMARK 620 4 HOH A 420 O 96.1 92.9 72.3 REMARK 620 5 HOH A 421 O 91.9 92.7 154.6 82.5 REMARK 620 6 HOH A 431 O 80.9 93.8 143.4 144.1 62.0 REMARK 620 7 HOH A 497 O 88.6 82.1 72.1 144.3 132.8 71.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 353 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 25 O REMARK 620 2 ASP A 7 OD1 74.7 REMARK 620 3 PHE A 8 O 161.8 87.1 REMARK 620 4 ASP A 105 OD2 82.8 94.8 99.0 REMARK 620 5 TMP A 355 O1P 105.5 172.6 92.6 92.5 REMARK 620 6 HOH A 426 O 91.8 79.0 84.6 172.7 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 353 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT E 14 OP1 REMARK 620 2 HOH E 26 O 93.8 REMARK 620 3 ASP B 7 OD1 77.0 170.8 REMARK 620 4 PHE B 8 O 147.2 111.5 77.0 REMARK 620 5 ASP B 105 OD2 79.0 96.1 82.0 77.9 REMARK 620 6 HOH B 368 O 76.3 107.9 70.5 112.9 146.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 354 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH E 15 O REMARK 620 2 ALA B 181 O 178.4 REMARK 620 3 ILE B 186 O 90.1 89.5 REMARK 620 4 HOH B 402 O 88.8 92.4 148.4 REMARK 620 5 HOH B 406 O 87.4 91.1 70.6 140.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 356 DBREF 2RDJ C 1 14 PDB 2RDJ 2RDJ 1 14 DBREF 2RDJ D 3 18 PDB 2RDJ 2RDJ 3 18 DBREF 2RDJ E 1 14 PDB 2RDJ 2RDJ 1 14 DBREF 2RDJ F 4 18 PDB 2RDJ 2RDJ 4 18 DBREF 2RDJ A 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 2RDJ B 1 352 UNP Q97W02 DPO42_SULSO 1 352 SEQRES 1 C 14 DG DG DG DA DC DC DC DT DT DC DG DA DA SEQRES 2 C 14 DT SEQRES 1 D 16 DT DT DA DT DT DC DG DA DA DG DG DG DT SEQRES 2 D 16 DC DC DC SEQRES 1 E 14 DG DG DG DA DC DC DC DT DT DC DG DA DA SEQRES 2 E 14 DT SEQRES 1 F 15 DT DA DT DT DC DG DA DA DG DG DG DT DC SEQRES 2 F 15 DC DC SEQRES 1 A 352 MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 352 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 352 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 352 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 352 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 352 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 352 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 352 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 352 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 352 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 352 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 352 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 352 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 352 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 352 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 352 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 352 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 352 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 352 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 352 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 352 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 352 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 352 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 352 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 352 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 352 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 352 LYS PHE ILE GLU ALA ILE GLY LEU ASP LYS PHE PHE ASP SEQRES 28 A 352 THR SEQRES 1 B 352 MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 352 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 352 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 352 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 352 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 352 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 352 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 352 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 352 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 352 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 352 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 352 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 352 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 352 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 352 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 352 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 352 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 352 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 352 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 352 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 352 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 352 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 352 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 352 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 352 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 352 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 352 LYS PHE ILE GLU ALA ILE GLY LEU ASP LYS PHE PHE ASP SEQRES 28 B 352 THR HET CA A 353 1 HET CA A 354 1 HET TMP A 355 21 HET GOL A 356 6 HET CA B 353 1 HET CA B 354 1 HETNAM CA CALCIUM ION HETNAM TMP THYMIDINE-5'-PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 CA 4(CA 2+) FORMUL 9 TMP C10 H15 N2 O8 P FORMUL 10 GOL C3 H8 O3 FORMUL 13 HOH *305(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 ARG A 93 1 17 HELIX 6 6 GLU A 94 SER A 96 5 3 HELIX 7 7 ASP A 117 LYS A 137 1 21 HELIX 8 8 ASN A 147 LYS A 159 1 13 HELIX 9 9 ASP A 167 LEU A 178 1 12 HELIX 10 10 ASP A 179 VAL A 183 5 5 HELIX 11 11 GLY A 187 LYS A 196 1 10 HELIX 12 12 LYS A 201 SER A 207 5 7 HELIX 13 13 GLU A 209 GLY A 218 1 10 HELIX 14 14 GLY A 218 ARG A 230 1 13 HELIX 15 15 ASN A 257 ASP A 277 1 21 HELIX 16 16 SER A 307 ASP A 326 1 20 HELIX 17 17 TYR B 10 ASN B 20 1 11 HELIX 18 18 PRO B 21 LYS B 24 5 4 HELIX 19 19 ASN B 47 PHE B 53 1 7 HELIX 20 20 PRO B 60 LEU B 68 1 9 HELIX 21 21 ARG B 77 ARG B 93 1 17 HELIX 22 22 ASP B 117 LYS B 137 1 21 HELIX 23 23 ASN B 147 LYS B 159 1 13 HELIX 24 24 ASP B 167 LEU B 178 1 12 HELIX 25 25 ASP B 179 VAL B 183 5 5 HELIX 26 26 GLY B 187 LEU B 197 1 11 HELIX 27 27 LYS B 201 SER B 207 5 7 HELIX 28 28 GLU B 209 GLY B 218 1 10 HELIX 29 29 GLY B 218 ARG B 230 1 13 HELIX 30 30 ASN B 257 ASP B 277 1 21 HELIX 31 31 SER B 307 ASP B 326 1 20 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O ILE A 333 N VAL A 249 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 ILE B 99 SER B 103 0 SHEET 2 D 5 GLU B 106 ASP B 110 -1 O TYR B 108 N GLU B 100 SHEET 3 D 5 VAL B 3 PHE B 8 -1 N LEU B 4 O LEU B 109 SHEET 4 D 5 VAL B 140 SER B 145 -1 O GLY B 143 N PHE B 5 SHEET 5 D 5 ILE B 163 VAL B 165 1 O LYS B 164 N ILE B 144 SHEET 1 E 3 GLY B 41 ALA B 46 0 SHEET 2 E 3 VAL B 28 PHE B 33 -1 N VAL B 30 O ALA B 44 SHEET 3 E 3 VAL B 72 PRO B 75 1 O VAL B 72 N VAL B 29 SHEET 1 F 4 SER B 244 SER B 255 0 SHEET 2 F 4 ILE B 330 PHE B 340 -1 O PHE B 337 N ILE B 245 SHEET 3 F 4 PRO B 281 THR B 290 -1 N VAL B 289 O ARG B 331 SHEET 4 F 4 ILE B 295 THR B 301 -1 O VAL B 296 N ALA B 288 LINK O HOH C 17 CA CA A 354 1555 1555 2.38 LINK O HOH C 25 CA CA A 353 1555 1555 2.30 LINK OP1 DT E 14 CA CA B 353 1555 1555 2.46 LINK O HOH E 15 CA CA B 354 1555 1555 2.36 LINK O HOH E 26 CA CA B 353 1555 1555 2.46 LINK OD1 ASP A 7 CA CA A 353 1555 1555 2.30 LINK O PHE A 8 CA CA A 353 1555 1555 2.31 LINK OD2 ASP A 105 CA CA A 353 1555 1555 2.30 LINK O ALA A 181 CA CA A 354 1555 1555 2.34 LINK O ILE A 186 CA CA A 354 1555 1555 2.33 LINK CA CA A 353 O1P TMP A 355 1555 1555 2.29 LINK CA CA A 353 O HOH A 426 1555 1555 2.35 LINK CA CA A 354 O HOH A 420 1555 1555 2.27 LINK CA CA A 354 O HOH A 421 1555 1555 2.21 LINK CA CA A 354 O HOH A 431 1555 1555 2.30 LINK CA CA A 354 O HOH A 497 1555 1555 2.34 LINK OD1 ASP B 7 CA CA B 353 1555 1555 2.58 LINK O PHE B 8 CA CA B 353 1555 1555 2.24 LINK OD2 ASP B 105 CA CA B 353 1555 1555 2.30 LINK O ALA B 181 CA CA B 354 1555 1555 2.32 LINK O ILE B 186 CA CA B 354 1555 1555 2.36 LINK CA CA B 353 O HOH B 368 1555 1555 2.31 LINK CA CA B 354 O HOH B 402 1555 1555 2.21 LINK CA CA B 354 O HOH B 406 1555 1555 2.27 CISPEP 1 LYS A 159 PRO A 160 0 0.05 CISPEP 2 LYS B 159 PRO B 160 0 0.77 SITE 1 AC1 6 ASP A 7 PHE A 8 ASP A 105 TMP A 355 SITE 2 AC1 6 HOH A 426 HOH C 25 SITE 1 AC2 7 ALA A 181 ILE A 186 HOH A 420 HOH A 421 SITE 2 AC2 7 HOH A 431 HOH A 497 HOH C 17 SITE 1 AC3 6 ASP B 7 PHE B 8 ASP B 105 HOH B 368 SITE 2 AC3 6 DT E 14 HOH E 26 SITE 1 AC4 5 ALA B 181 ILE B 186 HOH B 402 HOH B 406 SITE 2 AC4 5 HOH E 15 SITE 1 AC5 18 PHE A 8 TYR A 10 PHE A 11 TYR A 12 SITE 2 AC5 18 ALA A 44 THR A 45 ARG A 51 ASP A 105 SITE 3 AC5 18 CA A 353 GOL A 356 HOH A 375 HOH A 427 SITE 4 AC5 18 HOH A 445 HOH A 499 DT C 14 HOH C 25 SITE 5 AC5 18 DT D 4 DA D 5 SITE 1 AC6 5 LYS A 56 ALA A 57 TMP A 355 HOH A 479 SITE 2 AC6 5 HOH A 495 CRYST1 97.993 102.510 106.109 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009424 0.00000