PDB Short entry for 2RDU HEADER OXIDOREDUCTASE 25-SEP-07 2RDU TITLE CRYSTAL STRUCTURE OF HUMAN GLYCOLATE OXIDASE IN COMPLEX WITH TITLE 2 GLYOXYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYACID OXIDASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAOX1, GLYCOLATE OXIDASE, GOX; COMPND 5 EC: 1.1.3.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HAO1, GOX1, HAOX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GOX, HAOX1, GLYCOLATE OXIDASE, HYDROXY ACID OXIDASE, GLYOXYLATE, KEYWDS 2 GLYOXYLIC ACID, FLAVOPROTEIN, FMN, GLYCOLATE PATHWAY, KEYWDS 3 OXIDOREDUCTASE, PEROXISOME EXPDTA X-RAY DIFFRACTION AUTHOR M.S.MURRAY,R.P.HOLMES,W.T.LOWTHER REVDAT 4 30-AUG-23 2RDU 1 REMARK HETSYN REVDAT 3 13-JUL-11 2RDU 1 VERSN REVDAT 2 24-FEB-09 2RDU 1 VERSN REVDAT 1 26-FEB-08 2RDU 0 JRNL AUTH M.S.MURRAY,R.P.HOLMES,W.T.LOWTHER JRNL TITL ACTIVE SITE AND LOOP 4 MOVEMENTS WITHIN HUMAN GLYCOLATE JRNL TITL 2 OXIDASE: IMPLICATIONS FOR SUBSTRATE SPECIFICITY AND DRUG JRNL TITL 3 DESIGN. JRNL REF BIOCHEMISTRY V. 47 2439 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18215067 JRNL DOI 10.1021/BI701710R REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 44620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2244 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2755 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.116 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2897 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3926 ; 1.350 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 6.140 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;32.834 ;23.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 514 ;14.427 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;13.865 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2155 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1523 ; 0.201 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1983 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 208 ; 0.111 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 73 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.107 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1851 ; 0.844 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2886 ; 1.208 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1216 ; 2.219 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1038 ; 3.496 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 54 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7710 -11.7930 -11.6350 REMARK 3 T TENSOR REMARK 3 T11: 0.0883 T22: 0.0848 REMARK 3 T33: 0.0135 T12: 0.0077 REMARK 3 T13: 0.0244 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.6395 L22: 1.0127 REMARK 3 L33: 0.4543 L12: 0.5471 REMARK 3 L13: 0.3183 L23: 0.4161 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: -0.0952 S13: -0.0062 REMARK 3 S21: 0.1459 S22: -0.0670 S23: 0.0154 REMARK 3 S31: 0.0510 S32: -0.0394 S33: 0.0235 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 55 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): 31.9960 -20.6810 -16.8500 REMARK 3 T TENSOR REMARK 3 T11: 0.0613 T22: 0.0456 REMARK 3 T33: 0.0611 T12: 0.0132 REMARK 3 T13: -0.0189 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.8326 L22: 0.8196 REMARK 3 L33: 0.2757 L12: 0.1332 REMARK 3 L13: -0.1625 L23: -0.1158 REMARK 3 S TENSOR REMARK 3 S11: 0.0096 S12: 0.0142 S13: -0.1773 REMARK 3 S21: 0.0842 S22: 0.0199 S23: -0.2547 REMARK 3 S31: 0.0471 S32: 0.0666 S33: -0.0295 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0690 -6.0610 -11.3470 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0868 REMARK 3 T33: 0.1041 T12: -0.0106 REMARK 3 T13: -0.0570 T23: -0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.0182 L22: 1.7724 REMARK 3 L33: 1.1496 L12: -0.5599 REMARK 3 L13: -0.5673 L23: 0.4299 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.2528 S13: 0.0968 REMARK 3 S21: 0.2725 S22: 0.1360 S23: -0.4649 REMARK 3 S31: -0.0140 S32: 0.2389 S33: -0.1171 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 315 REMARK 3 ORIGIN FOR THE GROUP (A): 27.5110 -8.9460 -27.0120 REMARK 3 T TENSOR REMARK 3 T11: 0.0569 T22: 0.0658 REMARK 3 T33: 0.0181 T12: -0.0009 REMARK 3 T13: 0.0241 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.5194 L22: 1.5947 REMARK 3 L33: 0.2665 L12: 0.2623 REMARK 3 L13: 0.0874 L23: 0.2158 REMARK 3 S TENSOR REMARK 3 S11: -0.0158 S12: 0.0785 S13: 0.0083 REMARK 3 S21: -0.1862 S22: 0.0543 S23: -0.1977 REMARK 3 S31: -0.0259 S32: 0.0664 S33: -0.0385 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 362 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6990 -23.9650 -18.0690 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.0430 REMARK 3 T33: 0.0364 T12: 0.0034 REMARK 3 T13: 0.0262 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.8782 L22: 1.1596 REMARK 3 L33: 2.2483 L12: 0.5216 REMARK 3 L13: 1.1837 L23: 0.4194 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: 0.0543 S13: -0.1364 REMARK 3 S21: 0.0382 S22: -0.0039 S23: -0.0259 REMARK 3 S31: 0.0804 S32: -0.0246 S33: -0.0254 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044741. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.2L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.570 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.08 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GOX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES,PEG 600,GLYOXYLATE, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.69300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.69300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.23400 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.69300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.69300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.23400 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 48.69300 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 48.69300 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.23400 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 48.69300 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 48.69300 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.23400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15670 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ASN A 363 REMARK 465 PRO A 364 REMARK 465 LEU A 365 REMARK 465 ALA A 366 REMARK 465 VAL A 367 REMARK 465 SER A 368 REMARK 465 LYS A 369 REMARK 465 ILE A 370 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 -123.77 55.65 REMARK 500 ASN A 56 92.21 64.11 REMARK 500 PRO A 74 44.80 -83.76 REMARK 500 TRP A 110 37.39 -99.77 REMARK 500 ASP A 202 -134.48 -113.93 REMARK 500 VAL A 257 109.89 -59.72 REMARK 500 GLN A 264 -99.71 -110.75 REMARK 500 GLN A 324 38.74 -160.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLV A 372 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GOX RELATED DB: PDB REMARK 900 SPINACH GLYCOLATE OXIDASE REMARK 900 RELATED ID: 2RDT RELATED DB: PDB REMARK 900 HUMAN GLYCOLATE OXIDASE IN COMPLEX WITH CDST REMARK 900 RELATED ID: 2RDW RELATED DB: PDB REMARK 900 HUMAN GLYCOLATE OXIDASE IN COMPLEX WITH SULFATE DBREF 2RDU A 1 370 UNP Q9UJM8 HAOX1_HUMAN 1 370 SEQADV 2RDU GLY A -16 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU SER A -15 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU HIS A -14 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU MET A -13 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU ALA A -12 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU SER A -11 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU MET A -10 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU THR A -9 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU GLY A -8 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU GLY A -7 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU GLN A -6 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU GLN A -5 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU MET A -4 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU GLY A -3 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU ARG A -2 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU GLY A -1 UNP Q9UJM8 EXPRESSION TAG SEQADV 2RDU SER A 0 UNP Q9UJM8 EXPRESSION TAG SEQRES 1 A 387 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 A 387 GLY ARG GLY SER MET LEU PRO ARG LEU ILE CYS ILE ASN SEQRES 3 A 387 ASP TYR GLU GLN HIS ALA LYS SER VAL LEU PRO LYS SER SEQRES 4 A 387 ILE TYR ASP TYR TYR ARG SER GLY ALA ASN ASP GLU GLU SEQRES 5 A 387 THR LEU ALA ASP ASN ILE ALA ALA PHE SER ARG TRP LYS SEQRES 6 A 387 LEU TYR PRO ARG MET LEU ARG ASN VAL ALA GLU THR ASP SEQRES 7 A 387 LEU SER THR SER VAL LEU GLY GLN ARG VAL SER MET PRO SEQRES 8 A 387 ILE CYS VAL GLY ALA THR ALA MET GLN ARG MET ALA HIS SEQRES 9 A 387 VAL ASP GLY GLU LEU ALA THR VAL ARG ALA CYS GLN SER SEQRES 10 A 387 LEU GLY THR GLY MET MET LEU SER SER TRP ALA THR SER SEQRES 11 A 387 SER ILE GLU GLU VAL ALA GLU ALA GLY PRO GLU ALA LEU SEQRES 12 A 387 ARG TRP LEU GLN LEU TYR ILE TYR LYS ASP ARG GLU VAL SEQRES 13 A 387 THR LYS LYS LEU VAL ARG GLN ALA GLU LYS MET GLY TYR SEQRES 14 A 387 LYS ALA ILE PHE VAL THR VAL ASP THR PRO TYR LEU GLY SEQRES 15 A 387 ASN ARG LEU ASP ASP VAL ARG ASN ARG PHE LYS LEU PRO SEQRES 16 A 387 PRO GLN LEU ARG MET LYS ASN PHE GLU THR SER THR LEU SEQRES 17 A 387 SER PHE SER PRO GLU GLU ASN PHE GLY ASP ASP SER GLY SEQRES 18 A 387 LEU ALA ALA TYR VAL ALA LYS ALA ILE ASP PRO SER ILE SEQRES 19 A 387 SER TRP GLU ASP ILE LYS TRP LEU ARG ARG LEU THR SER SEQRES 20 A 387 LEU PRO ILE VAL ALA LYS GLY ILE LEU ARG GLY ASP ASP SEQRES 21 A 387 ALA ARG GLU ALA VAL LYS HIS GLY LEU ASN GLY ILE LEU SEQRES 22 A 387 VAL SER ASN HIS GLY ALA ARG GLN LEU ASP GLY VAL PRO SEQRES 23 A 387 ALA THR ILE ASP VAL LEU PRO GLU ILE VAL GLU ALA VAL SEQRES 24 A 387 GLU GLY LYS VAL GLU VAL PHE LEU ASP GLY GLY VAL ARG SEQRES 25 A 387 LYS GLY THR ASP VAL LEU LYS ALA LEU ALA LEU GLY ALA SEQRES 26 A 387 LYS ALA VAL PHE VAL GLY ARG PRO ILE VAL TRP GLY LEU SEQRES 27 A 387 ALA PHE GLN GLY GLU LYS GLY VAL GLN ASP VAL LEU GLU SEQRES 28 A 387 ILE LEU LYS GLU GLU PHE ARG LEU ALA MET ALA LEU SER SEQRES 29 A 387 GLY CYS GLN ASN VAL LYS VAL ILE ASP LYS THR LEU VAL SEQRES 30 A 387 ARG LYS ASN PRO LEU ALA VAL SER LYS ILE HET FMN A 371 31 HET GLV A 372 5 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GLV GLYOXYLIC ACID HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GLV GLYOXALATE; GLYOXYLATE FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 GLV C2 H2 O3 FORMUL 4 HOH *232(H2 O) HELIX 1 1 CYS A 7 LEU A 19 1 13 HELIX 2 2 PRO A 20 SER A 29 1 10 HELIX 3 3 GLU A 34 TRP A 47 1 14 HELIX 4 4 MET A 82 ALA A 86 5 5 HELIX 5 5 ASP A 89 GLY A 102 1 14 HELIX 6 6 SER A 114 GLY A 122 1 9 HELIX 7 7 ASP A 136 MET A 150 1 15 HELIX 8 8 ARG A 167 ARG A 174 1 8 HELIX 9 9 SER A 203 ILE A 213 1 11 HELIX 10 10 SER A 218 THR A 229 1 12 HELIX 11 11 ARG A 240 HIS A 250 1 11 HELIX 12 12 ALA A 270 GLU A 283 1 14 HELIX 13 13 LYS A 296 LEU A 306 1 11 HELIX 14 14 GLY A 314 GLY A 348 1 35 HELIX 15 15 ASN A 351 ILE A 355 5 5 HELIX 16 16 ASP A 356 THR A 358 5 3 SHEET 1 A 2 LYS A 48 LEU A 49 0 SHEET 2 A 2 VAL A 360 ARG A 361 -1 O ARG A 361 N LYS A 48 SHEET 1 B 2 THR A 64 VAL A 66 0 SHEET 2 B 2 GLN A 69 VAL A 71 -1 O VAL A 71 N THR A 64 SHEET 1 C 9 ILE A 75 VAL A 77 0 SHEET 2 C 9 GLY A 104 LEU A 107 1 O MET A 106 N VAL A 77 SHEET 3 C 9 LEU A 126 LEU A 131 1 O TRP A 128 N LEU A 107 SHEET 4 C 9 ILE A 155 THR A 158 1 O PHE A 156 N LEU A 129 SHEET 5 C 9 ILE A 233 ILE A 238 1 O LYS A 236 N VAL A 157 SHEET 6 C 9 GLY A 254 VAL A 257 1 O LEU A 256 N ALA A 235 SHEET 7 C 9 GLU A 287 ASP A 291 1 O PHE A 289 N ILE A 255 SHEET 8 C 9 ALA A 310 VAL A 313 1 O PHE A 312 N LEU A 290 SHEET 9 C 9 ILE A 75 VAL A 77 1 N CYS A 76 O VAL A 311 SITE 1 AC1 23 TYR A 26 TYR A 27 ALA A 79 THR A 80 SITE 2 AC1 23 ALA A 81 SER A 108 GLN A 130 TYR A 132 SITE 3 AC1 23 THR A 158 LYS A 236 SER A 258 HIS A 260 SITE 4 AC1 23 GLY A 261 ARG A 263 ASP A 291 GLY A 292 SITE 5 AC1 23 GLY A 293 ARG A 295 GLY A 314 ARG A 315 SITE 6 AC1 23 HOH A 380 HOH A 389 HOH A 399 SITE 1 AC2 7 TYR A 26 TRP A 110 TYR A 132 ARG A 167 SITE 2 AC2 7 LEU A 205 HIS A 260 ARG A 263 CRYST1 97.386 97.386 80.468 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012427 0.00000