PDB Short entry for 2REI HEADER TRANSFERASE 26-SEP-07 2REI TITLE KINASE DOMAIN OF HUMAN EPHRIN TYPE-A RECEPTOR 7 (EPHA7) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN: RESIDUES 590-899; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR EHK-3, EPH HOMOLOGY KINASE COMPND 6 3, RECEPTOR PROTEIN-TYROSINE KINASE HEK11; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: BRAIN; SOURCE 6 GENE: EPHA7, EHK3, HEK11; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, RECEPTOR, TRANSFERASE, KEYWDS 2 PHOSPHORYLATION, TRANSMEMBRANE, TYROSINE-PROTEIN KINASE, ALTERNATIVE KEYWDS 3 SPLICING, GLYCOPROTEIN, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 4 POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR J.R.WALKER,D.CUERRIER,C.BUTLER-COLE,J.WEIGELT,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 3 30-AUG-23 2REI 1 REMARK SEQADV REVDAT 2 24-FEB-09 2REI 1 VERSN REVDAT 1 23-OCT-07 2REI 0 JRNL AUTH J.R.WALKER,D.CUERRIER,C.BUTLER-COLE,J.WEIGELT, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,A.BOCHKAREV,S.DHE-PAGANON JRNL TITL KINASE DOMAIN OF HUMAN EPHRIN TYPE-A RECEPTOR 7 (EPHA7). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2171 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3021 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 171 REMARK 3 BIN FREE R VALUE : 0.2180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2172 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.78000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.713 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2313 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3143 ; 1.208 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 5.247 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;32.121 ;23.524 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;12.462 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.203 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1776 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1154 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1613 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 205 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1477 ; 0.674 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2318 ; 1.047 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 959 ; 1.944 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 825 ; 3.049 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 607 A 619 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3906 12.2409 6.6326 REMARK 3 T TENSOR REMARK 3 T11: 0.1503 T22: 0.4865 REMARK 3 T33: 0.2444 T12: 0.0167 REMARK 3 T13: -0.1078 T23: -0.0879 REMARK 3 L TENSOR REMARK 3 L11: 41.5984 L22: 10.7200 REMARK 3 L33: 10.6188 L12: 20.9754 REMARK 3 L13: -11.2648 L23: -6.7221 REMARK 3 S TENSOR REMARK 3 S11: 1.4574 S12: -1.6541 S13: 0.7124 REMARK 3 S21: 1.3622 S22: -0.9334 S23: -0.6725 REMARK 3 S31: -1.0333 S32: 0.7184 S33: -0.5240 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 620 A 634 REMARK 3 ORIGIN FOR THE GROUP (A): 33.1095 10.2690 -8.5901 REMARK 3 T TENSOR REMARK 3 T11: -0.1867 T22: -0.0198 REMARK 3 T33: -0.0754 T12: 0.0154 REMARK 3 T13: -0.0157 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 4.3291 L22: 2.5388 REMARK 3 L33: 17.8269 L12: -0.4678 REMARK 3 L13: 2.4618 L23: -0.4171 REMARK 3 S TENSOR REMARK 3 S11: -0.1030 S12: -0.5832 S13: -0.1762 REMARK 3 S21: 0.0478 S22: 0.0315 S23: -0.0205 REMARK 3 S31: 0.3290 S32: -0.3997 S33: 0.0715 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 635 A 657 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6308 13.4401 -18.6706 REMARK 3 T TENSOR REMARK 3 T11: -0.1646 T22: -0.0222 REMARK 3 T33: -0.0939 T12: -0.0233 REMARK 3 T13: 0.0099 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 10.5939 L22: 9.7974 REMARK 3 L33: 6.8222 L12: -4.5929 REMARK 3 L13: -0.6713 L23: 4.2627 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.2167 S13: 0.2419 REMARK 3 S21: -0.3801 S22: -0.1893 S23: 0.1464 REMARK 3 S31: -0.3570 S32: -0.4139 S33: 0.2469 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 658 A 688 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9693 16.5293 -7.3815 REMARK 3 T TENSOR REMARK 3 T11: -0.1101 T22: 0.0464 REMARK 3 T33: -0.0301 T12: 0.0420 REMARK 3 T13: -0.0237 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 3.4050 L22: 1.2327 REMARK 3 L33: 5.0415 L12: 0.7063 REMARK 3 L13: 0.6466 L23: -0.6966 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: -0.3907 S13: 0.3774 REMARK 3 S21: 0.2139 S22: -0.0353 S23: 0.0592 REMARK 3 S31: -0.5645 S32: -0.2941 S33: 0.1247 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 689 A 745 REMARK 3 ORIGIN FOR THE GROUP (A): 14.2899 6.5402 -14.2171 REMARK 3 T TENSOR REMARK 3 T11: -0.1329 T22: -0.0277 REMARK 3 T33: -0.1396 T12: 0.0292 REMARK 3 T13: 0.0033 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.6863 L22: 0.4383 REMARK 3 L33: 0.1150 L12: 0.5943 REMARK 3 L13: 0.1098 L23: -0.0491 REMARK 3 S TENSOR REMARK 3 S11: -0.0713 S12: 0.2675 S13: -0.1293 REMARK 3 S21: -0.0879 S22: 0.0873 S23: -0.0504 REMARK 3 S31: 0.0325 S32: 0.0950 S33: -0.0160 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 746 A 802 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7760 8.6083 -5.6514 REMARK 3 T TENSOR REMARK 3 T11: -0.1921 T22: -0.0395 REMARK 3 T33: -0.1489 T12: -0.0098 REMARK 3 T13: -0.0003 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 4.4270 L22: 1.6264 REMARK 3 L33: 4.0771 L12: -1.5770 REMARK 3 L13: -0.2222 L23: -0.0634 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: -0.0572 S13: 0.1308 REMARK 3 S21: 0.0222 S22: 0.1256 S23: -0.1814 REMARK 3 S31: -0.1590 S32: 0.3618 S33: -0.0364 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 803 A 841 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8037 13.2976 -3.6300 REMARK 3 T TENSOR REMARK 3 T11: -0.2017 T22: -0.1356 REMARK 3 T33: -0.1586 T12: 0.0041 REMARK 3 T13: 0.0010 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.9298 L22: 1.6214 REMARK 3 L33: 3.2324 L12: -0.4202 REMARK 3 L13: 0.7095 L23: 0.3416 REMARK 3 S TENSOR REMARK 3 S11: -0.1163 S12: -0.0167 S13: 0.1263 REMARK 3 S21: -0.0143 S22: 0.0442 S23: 0.0346 REMARK 3 S31: -0.2617 S32: 0.0384 S33: 0.0721 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 842 A 851 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6087 21.2615 0.6449 REMARK 3 T TENSOR REMARK 3 T11: -0.0635 T22: -0.0589 REMARK 3 T33: -0.0605 T12: 0.0761 REMARK 3 T13: -0.0820 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 14.1061 L22: 16.8088 REMARK 3 L33: 13.0190 L12: 9.7791 REMARK 3 L13: -6.6735 L23: -10.0374 REMARK 3 S TENSOR REMARK 3 S11: -0.1023 S12: -0.3801 S13: 0.8092 REMARK 3 S21: 0.6938 S22: -0.0566 S23: 0.0499 REMARK 3 S31: -1.0583 S32: -0.3079 S33: 0.1590 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 852 A 894 REMARK 3 ORIGIN FOR THE GROUP (A): -5.0131 2.4753 -3.0417 REMARK 3 T TENSOR REMARK 3 T11: -0.1648 T22: -0.1008 REMARK 3 T33: -0.0981 T12: -0.0051 REMARK 3 T13: 0.0105 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 3.4844 L22: 2.2616 REMARK 3 L33: 2.0391 L12: -1.4798 REMARK 3 L13: 0.8664 L23: -0.5795 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.2229 S13: -0.4430 REMARK 3 S21: 0.0061 S22: 0.0196 S23: 0.2007 REMARK 3 S31: 0.2921 S32: -0.1374 S33: -0.0236 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 895 A 902 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9606 -9.5426 -11.6096 REMARK 3 T TENSOR REMARK 3 T11: 0.3133 T22: 0.1634 REMARK 3 T33: 0.3600 T12: 0.0118 REMARK 3 T13: -0.0876 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 9.5966 L22: 26.8544 REMARK 3 L33: 1.1928 L12: -15.5466 REMARK 3 L13: -3.1739 L23: 5.6304 REMARK 3 S TENSOR REMARK 3 S11: -0.5828 S12: 0.3670 S13: -0.3583 REMARK 3 S21: 0.3896 S22: 0.7815 S23: 1.6455 REMARK 3 S31: 1.0426 S32: -1.3451 S33: -0.1987 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS REMARK 4 REMARK 4 2REI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111), REMARK 200 SAGITALLY FOCUSING CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43283 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 41.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GSF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: WELL SOLUTION: 20% PEG 3350, 0.2 M NH4 REMARK 280 FORMATE, 0.1 M HEPES PH 7.0. PROTEIN SOLUTION: 12 MG/ML. DROPS: REMARK 280 1:1 RATIO OF WELL:PROTEIN SOLUTION. CRYSTALS CRYOPROTECTED BY REMARK 280 TRANSFER TO DROP CONTAINING MOTHER LIQUOR TO WHICH MPD WAS ADDED REMARK 280 TO 25%, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.83333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.75000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 35.91667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 179.58333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 589 REMARK 465 GLN A 590 REMARK 465 GLU A 591 REMARK 465 GLY A 592 REMARK 465 ASP A 593 REMARK 465 GLU A 594 REMARK 465 GLU A 595 REMARK 465 LEU A 596 REMARK 465 TYR A 597 REMARK 465 PHE A 598 REMARK 465 HIS A 599 REMARK 465 PHE A 600 REMARK 465 LYS A 601 REMARK 465 PHE A 602 REMARK 465 PRO A 603 REMARK 465 GLY A 604 REMARK 465 THR A 605 REMARK 465 LYS A 606 REMARK 465 SER A 780 REMARK 465 ARG A 781 REMARK 465 VAL A 782 REMARK 465 ILE A 783 REMARK 465 GLU A 784 REMARK 465 ASP A 785 REMARK 465 ASP A 786 REMARK 465 PRO A 787 REMARK 465 GLU A 788 REMARK 465 ALA A 789 REMARK 465 VAL A 790 REMARK 465 TYR A 791 REMARK 465 THR A 792 REMARK 465 THR A 793 REMARK 465 THR A 794 REMARK 465 GLY A 795 REMARK 465 GLY A 796 REMARK 465 LYS A 797 REMARK 465 ILE A 798 REMARK 465 HIS A 903 REMARK 465 HIS A 904 REMARK 465 HIS A 905 REMARK 465 HIS A 906 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 615 CG CD OE1 OE2 REMARK 470 ASP A 616 CG OD1 OD2 REMARK 470 ARG A 619 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 658 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 674 NZ REMARK 470 ILE A 733 CD1 REMARK 470 LYS A 875 CD CE NZ REMARK 470 GLU A 884 CD OE1 OE2 REMARK 470 HIS A 902 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 757 -27.49 79.73 REMARK 500 ARG A 757 -13.19 78.94 REMARK 500 ASP A 776 80.71 70.06 REMARK 500 ASP A 776 80.71 63.93 REMARK 500 TRP A 838 -126.22 51.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 910 DBREF 2REI A 590 899 UNP Q15375 EPHA7_HUMAN 590 899 SEQADV 2REI MET A 589 UNP Q15375 EXPRESSION TAG SEQADV 2REI ALA A 900 UNP Q15375 EXPRESSION TAG SEQADV 2REI HIS A 901 UNP Q15375 EXPRESSION TAG SEQADV 2REI HIS A 902 UNP Q15375 EXPRESSION TAG SEQADV 2REI HIS A 903 UNP Q15375 EXPRESSION TAG SEQADV 2REI HIS A 904 UNP Q15375 EXPRESSION TAG SEQADV 2REI HIS A 905 UNP Q15375 EXPRESSION TAG SEQADV 2REI HIS A 906 UNP Q15375 EXPRESSION TAG SEQRES 1 A 318 MET GLN GLU GLY ASP GLU GLU LEU TYR PHE HIS PHE LYS SEQRES 2 A 318 PHE PRO GLY THR LYS THR TYR ILE ASP PRO GLU THR TYR SEQRES 3 A 318 GLU ASP PRO ASN ARG ALA VAL HIS GLN PHE ALA LYS GLU SEQRES 4 A 318 LEU ASP ALA SER CYS ILE LYS ILE GLU ARG VAL ILE GLY SEQRES 5 A 318 ALA GLY GLU PHE GLY GLU VAL CYS SER GLY ARG LEU LYS SEQRES 6 A 318 LEU PRO GLY LYS ARG ASP VAL ALA VAL ALA ILE LYS THR SEQRES 7 A 318 LEU LYS VAL GLY TYR THR GLU LYS GLN ARG ARG ASP PHE SEQRES 8 A 318 LEU CYS GLU ALA SER ILE MET GLY GLN PHE ASP HIS PRO SEQRES 9 A 318 ASN VAL VAL HIS LEU GLU GLY VAL VAL THR ARG GLY LYS SEQRES 10 A 318 PRO VAL MET ILE VAL ILE GLU PHE MET GLU ASN GLY ALA SEQRES 11 A 318 LEU ASP ALA PHE LEU ARG LYS HIS ASP GLY GLN PHE THR SEQRES 12 A 318 VAL ILE GLN LEU VAL GLY MET LEU ARG GLY ILE ALA ALA SEQRES 13 A 318 GLY MET ARG TYR LEU ALA ASP MET GLY TYR VAL HIS ARG SEQRES 14 A 318 ASP LEU ALA ALA ARG ASN ILE LEU VAL ASN SER ASN LEU SEQRES 15 A 318 VAL CYS LYS VAL SER ASP PHE GLY LEU SER ARG VAL ILE SEQRES 16 A 318 GLU ASP ASP PRO GLU ALA VAL TYR THR THR THR GLY GLY SEQRES 17 A 318 LYS ILE PRO VAL ARG TRP THR ALA PRO GLU ALA ILE GLN SEQRES 18 A 318 TYR ARG LYS PHE THR SER ALA SER ASP VAL TRP SER TYR SEQRES 19 A 318 GLY ILE VAL MET TRP GLU VAL MET SER TYR GLY GLU ARG SEQRES 20 A 318 PRO TYR TRP ASP MET SER ASN GLN ASP VAL ILE LYS ALA SEQRES 21 A 318 ILE GLU GLU GLY TYR ARG LEU PRO ALA PRO MET ASP CYS SEQRES 22 A 318 PRO ALA GLY LEU HIS GLN LEU MET LEU ASP CYS TRP GLN SEQRES 23 A 318 LYS GLU ARG ALA GLU ARG PRO LYS PHE GLU GLN ILE VAL SEQRES 24 A 318 GLY ILE LEU ASP LYS MET ILE ARG ASN PRO ASN SER ALA SEQRES 25 A 318 HIS HIS HIS HIS HIS HIS HET MPD A 910 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 MPD C6 H14 O2 FORMUL 3 HOH *292(H2 O) HELIX 1 1 ASP A 610 TYR A 614 5 5 HELIX 2 2 PRO A 617 ALA A 625 1 9 HELIX 3 4 THR A 672 GLY A 687 1 16 HELIX 4 5 LEU A 719 HIS A 726 1 8 HELIX 5 6 THR A 731 MET A 752 1 22 HELIX 6 7 ALA A 760 ARG A 762 5 3 HELIX 7 8 PRO A 799 THR A 803 5 5 HELIX 8 9 ALA A 804 ARG A 811 1 8 HELIX 9 10 THR A 814 SER A 831 1 18 HELIX 10 11 SER A 841 GLU A 851 1 11 HELIX 11 12 PRO A 862 TRP A 873 1 12 HELIX 12 13 GLU A 876 ARG A 880 5 5 HELIX 13 14 LYS A 882 ASN A 896 1 15 HELIX 14 15 PRO A 897 HIS A 902 5 6 SHEET 1 A 5 ILE A 633 ALA A 641 0 SHEET 2 A 5 GLU A 646 LEU A 652 -1 O VAL A 647 N ILE A 639 SHEET 3 A 5 VAL A 660 THR A 666 -1 O ILE A 664 N CYS A 648 SHEET 4 A 5 MET A 708 GLU A 712 -1 O ILE A 709 N LYS A 665 SHEET 5 A 5 LEU A 697 VAL A 701 -1 N GLY A 699 O VAL A 710 SHEET 1 B 3 GLY A 717 ALA A 718 0 SHEET 2 B 3 ILE A 764 VAL A 766 -1 O VAL A 766 N GLY A 717 SHEET 3 B 3 CYS A 772 VAL A 774 -1 O LYS A 773 N LEU A 765 SITE 1 AC1 5 GLN A 734 GLY A 737 MET A 738 LEU A 770 SITE 2 AC1 5 HOH A 924 CRYST1 51.880 51.880 215.500 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019275 0.011129 0.000000 0.00000 SCALE2 0.000000 0.022257 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004640 0.00000