PDB Short entry for 2RFJ HEADER TRANSCRIPTION REGULATOR 30-SEP-07 2RFJ TITLE CRYSTAL STRUCTURE OF THE BROMO DOMAIN 1 IN HUMAN BROMODOMAIN TITLE 2 CONTAINING PROTEIN, TESTIS SPECIFIC (BRDT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN TESTIS-SPECIFIC PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: BROMO 1 DOMAIN: RESIDUES 21-137; COMPND 5 SYNONYM: RING3-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BRDT, BROMODOMAIN CONTAINING PROTEIN TESTIS SPECIFIC, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, NUCLEUS, TRANSCRIPTION, TRANSCRIPTION KEYWDS 3 REGULATION, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,E.SALAH,P.SAVITSKY,T.KEATES,E.PARIZOTTO,J.ELKINS, AUTHOR 2 A.C.W.PIKE,E.UGOCHUKWU,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 3 J.WEIGELT,M.SUNDSTROM,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 2RFJ 1 SEQADV REVDAT 4 11-APR-12 2RFJ 1 JRNL REVDAT 3 13-JUL-11 2RFJ 1 VERSN REVDAT 2 24-FEB-09 2RFJ 1 VERSN REVDAT 1 23-OCT-07 2RFJ 0 JRNL AUTH P.FILIPPAKOPOULOS,S.PICAUD,M.MANGOS,T.KEATES,J.P.LAMBERT, JRNL AUTH 2 D.BARSYTE-LOVEJOY,I.FELLETAR,R.VOLKMER,S.MULLER,T.PAWSON, JRNL AUTH 3 A.C.GINGRAS,C.H.ARROWSMITH,S.KNAPP JRNL TITL HISTONE RECOGNITION AND LARGE-SCALE STRUCTURAL ANALYSIS OF JRNL TITL 2 THE HUMAN BROMODOMAIN FAMILY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 149 214 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22464331 JRNL DOI 10.1016/J.CELL.2012.02.013 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 24883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1249 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1241 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.79000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.193 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.160 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2622 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1762 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3546 ; 1.517 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4317 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 5.799 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;34.254 ;25.366 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 461 ;14.656 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 7.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2835 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 509 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 555 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1662 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1251 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1232 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 190 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 4 ; 0.295 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 19 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1651 ; 4.141 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 613 ; 1.974 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2543 ; 4.772 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1169 ; 6.922 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1003 ; 8.048 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 27 A 135 4 REMARK 3 1 B 29 B 135 4 REMARK 3 1 C 30 C 133 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1358 ; 0.390 ; 0.500 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1358 ; 0.390 ; 0.000 REMARK 3 MEDIUM POSITIONAL 1 C (A): 1358 ; 0.440 ; 0.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1358 ; 1.510 ; 2.000 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1358 ; 1.700 ; 0.000 REMARK 3 MEDIUM THERMAL 1 C (A**2): 1358 ; 1.560 ; 0.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8990 20.3330 27.7130 REMARK 3 T TENSOR REMARK 3 T11: 0.1675 T22: -0.0543 REMARK 3 T33: -0.0630 T12: 0.0522 REMARK 3 T13: 0.0078 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.4151 L22: 0.9127 REMARK 3 L33: 6.9128 L12: 1.1255 REMARK 3 L13: -1.0236 L23: -1.1426 REMARK 3 S TENSOR REMARK 3 S11: -0.1511 S12: -0.0860 S13: -0.2206 REMARK 3 S21: -0.1072 S22: -0.1124 S23: -0.1852 REMARK 3 S31: 0.4957 S32: 0.1414 S33: 0.2634 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): 46.7910 32.5420 12.8650 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: -0.0218 REMARK 3 T33: -0.0689 T12: 0.0291 REMARK 3 T13: -0.0085 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.2804 L22: 1.6524 REMARK 3 L33: 4.1585 L12: -0.7018 REMARK 3 L13: -0.2023 L23: -2.3765 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: -0.0394 S13: 0.0067 REMARK 3 S21: -0.2030 S22: -0.0037 S23: 0.1526 REMARK 3 S31: 0.2807 S32: 0.2047 S33: -0.0264 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8370 29.2630 26.9200 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: -0.0019 REMARK 3 T33: -0.0792 T12: 0.0383 REMARK 3 T13: -0.0064 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.9257 L22: 0.8186 REMARK 3 L33: 1.8272 L12: 0.0986 REMARK 3 L13: -0.8143 L23: -0.2479 REMARK 3 S TENSOR REMARK 3 S11: -0.0964 S12: -0.0146 S13: 0.0295 REMARK 3 S21: 0.0499 S22: 0.0164 S23: 0.0331 REMARK 3 S31: 0.1258 S32: 0.1075 S33: 0.0800 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 65 REMARK 3 ORIGIN FOR THE GROUP (A): 57.2370 50.7780 8.1630 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: -0.0001 REMARK 3 T33: -0.1332 T12: -0.0551 REMARK 3 T13: 0.0078 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.3591 L22: 4.2875 REMARK 3 L33: 4.2362 L12: 0.9011 REMARK 3 L13: 2.0933 L23: 3.3204 REMARK 3 S TENSOR REMARK 3 S11: -0.2023 S12: 0.3261 S13: 0.1793 REMARK 3 S21: -0.4092 S22: 0.1640 S23: -0.0834 REMARK 3 S31: -0.5162 S32: 0.2713 S33: 0.0383 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 66 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 62.4990 43.6670 11.6030 REMARK 3 T TENSOR REMARK 3 T11: 0.1070 T22: 0.0762 REMARK 3 T33: -0.0825 T12: -0.0406 REMARK 3 T13: 0.0251 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.0722 L22: 1.6475 REMARK 3 L33: 2.6476 L12: 0.4732 REMARK 3 L13: 0.9485 L23: 1.4040 REMARK 3 S TENSOR REMARK 3 S11: -0.1548 S12: 0.3206 S13: -0.0688 REMARK 3 S21: -0.0748 S22: 0.1421 S23: -0.2022 REMARK 3 S31: -0.2444 S32: 0.4072 S33: 0.0127 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 93 B 135 REMARK 3 ORIGIN FOR THE GROUP (A): 50.1540 45.5640 13.5890 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: -0.0312 REMARK 3 T33: -0.0719 T12: 0.0244 REMARK 3 T13: -0.0267 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.6942 L22: 1.7466 REMARK 3 L33: 1.8462 L12: 0.9935 REMARK 3 L13: 0.4731 L23: 0.6674 REMARK 3 S TENSOR REMARK 3 S11: -0.0631 S12: 0.0109 S13: 0.0754 REMARK 3 S21: -0.1011 S22: -0.0304 S23: 0.0791 REMARK 3 S31: -0.1691 S32: 0.0446 S33: 0.0935 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 30 C 56 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3780 51.9540 39.5670 REMARK 3 T TENSOR REMARK 3 T11: 0.1275 T22: 0.0109 REMARK 3 T33: -0.1061 T12: -0.0550 REMARK 3 T13: 0.0132 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 1.0110 L22: 1.4051 REMARK 3 L33: 3.3048 L12: 0.3440 REMARK 3 L13: 0.5081 L23: 0.0773 REMARK 3 S TENSOR REMARK 3 S11: -0.1067 S12: -0.1340 S13: 0.0129 REMARK 3 S21: 0.2332 S22: 0.1044 S23: -0.0261 REMARK 3 S31: -0.2785 S32: 0.2942 S33: 0.0023 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 60 C 101 REMARK 3 ORIGIN FOR THE GROUP (A): 32.1790 46.8040 32.0780 REMARK 3 T TENSOR REMARK 3 T11: 0.0877 T22: 0.0497 REMARK 3 T33: -0.0740 T12: -0.0531 REMARK 3 T13: 0.0068 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.1333 L22: 3.4547 REMARK 3 L33: 1.6311 L12: -0.0856 REMARK 3 L13: 0.1576 L23: 0.4755 REMARK 3 S TENSOR REMARK 3 S11: -0.1075 S12: 0.0045 S13: 0.0092 REMARK 3 S21: -0.0828 S22: 0.2058 S23: -0.0845 REMARK 3 S31: -0.1040 S32: 0.4064 S33: -0.0983 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 102 C 133 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9060 44.4370 32.9310 REMARK 3 T TENSOR REMARK 3 T11: 0.1129 T22: -0.0168 REMARK 3 T33: -0.0572 T12: -0.0299 REMARK 3 T13: 0.0225 T23: -0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.2604 L22: 4.5288 REMARK 3 L33: 2.7682 L12: -1.6652 REMARK 3 L13: 0.7093 L23: 1.4118 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: -0.1132 S13: -0.1417 REMARK 3 S21: -0.1038 S22: 0.0637 S23: 0.2433 REMARK 3 S31: -0.1326 S32: 0.0344 S33: -0.0206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97866 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24939 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.063 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : 0.12900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68100 REMARK 200 R SYM FOR SHELL (I) : 0.68100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2NXB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M NA/K TARTRATE, 20.0% PEG 3350, REMARK 280 10.0% ETHYLENE GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.46750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.05350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.33950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.05350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.46750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.33950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 19 REMARK 465 ASN A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 LYS A 24 REMARK 465 ASN A 25 REMARK 465 GLY A 26 REMARK 465 ALA A 58 REMARK 465 VAL A 59 REMARK 465 GLU A 136 REMARK 465 GLU A 137 REMARK 465 SER B 19 REMARK 465 THR B 22 REMARK 465 LYS B 23 REMARK 465 LYS B 24 REMARK 465 ASN B 25 REMARK 465 GLY B 26 REMARK 465 ARG B 27 REMARK 465 LEU B 28 REMARK 465 ASP B 57 REMARK 465 ALA B 58 REMARK 465 VAL B 59 REMARK 465 GLU B 136 REMARK 465 GLU B 137 REMARK 465 SER C 19 REMARK 465 MET C 20 REMARK 465 ASN C 21 REMARK 465 THR C 22 REMARK 465 LYS C 23 REMARK 465 LYS C 24 REMARK 465 ASN C 25 REMARK 465 GLY C 26 REMARK 465 ARG C 27 REMARK 465 LEU C 28 REMARK 465 THR C 29 REMARK 465 ASP C 57 REMARK 465 ALA C 58 REMARK 465 VAL C 59 REMARK 465 PRO C 134 REMARK 465 GLN C 135 REMARK 465 GLU C 136 REMARK 465 GLU C 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 27 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 28 CG CD1 CD2 REMARK 470 THR A 29 OG1 CG2 REMARK 470 GLN A 33 CD OE1 NE2 REMARK 470 LYS A 37 CE NZ REMARK 470 LYS A 45 CE NZ REMARK 470 VAL A 56 CG1 CG2 REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 LYS A 86 CE NZ REMARK 470 LYS A 110 CD CE NZ REMARK 470 GLN A 135 CG CD OE1 NE2 REMARK 470 ASN B 21 CG OD1 ND2 REMARK 470 THR B 29 OG1 CG2 REMARK 470 GLN B 33 CD OE1 NE2 REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 41 CD CE NZ REMARK 470 VAL B 56 CG1 CG2 REMARK 470 LYS B 81 CD CE NZ REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 LYS B 90 CE NZ REMARK 470 LYS B 110 CD CE NZ REMARK 470 GLN B 135 CG CD OE1 NE2 REMARK 470 LYS C 41 CE NZ REMARK 470 VAL C 56 CG1 CG2 REMARK 470 LYS C 60 CG CD CE NZ REMARK 470 GLN C 62 CD OE1 NE2 REMARK 470 LYS C 81 CE NZ REMARK 470 LYS C 86 CG CD CE NZ REMARK 470 LYS C 90 CE NZ REMARK 470 LYS C 110 CE NZ REMARK 470 LYS C 124 NZ DBREF 2RFJ A 21 137 UNP Q58F21 BRDT_HUMAN 21 137 DBREF 2RFJ B 21 137 UNP Q58F21 BRDT_HUMAN 21 137 DBREF 2RFJ C 21 137 UNP Q58F21 BRDT_HUMAN 21 137 SEQADV 2RFJ SER A 19 UNP Q58F21 EXPRESSION TAG SEQADV 2RFJ MET A 20 UNP Q58F21 EXPRESSION TAG SEQADV 2RFJ GLN A 62 UNP Q58F21 LYS 62 VARIANT SEQADV 2RFJ SER B 19 UNP Q58F21 EXPRESSION TAG SEQADV 2RFJ MET B 20 UNP Q58F21 EXPRESSION TAG SEQADV 2RFJ GLN B 62 UNP Q58F21 LYS 62 VARIANT SEQADV 2RFJ SER C 19 UNP Q58F21 EXPRESSION TAG SEQADV 2RFJ MET C 20 UNP Q58F21 EXPRESSION TAG SEQADV 2RFJ GLN C 62 UNP Q58F21 LYS 62 VARIANT SEQRES 1 A 119 SER MET ASN THR LYS LYS ASN GLY ARG LEU THR ASN GLN SEQRES 2 A 119 LEU GLN TYR LEU GLN LYS VAL VAL LEU LYS ASP LEU TRP SEQRES 3 A 119 LYS HIS SER PHE SER TRP PRO PHE GLN ARG PRO VAL ASP SEQRES 4 A 119 ALA VAL LYS LEU GLN LEU PRO ASP TYR TYR THR ILE ILE SEQRES 5 A 119 LYS ASN PRO MET ASP LEU ASN THR ILE LYS LYS ARG LEU SEQRES 6 A 119 GLU ASN LYS TYR TYR ALA LYS ALA SER GLU CYS ILE GLU SEQRES 7 A 119 ASP PHE ASN THR MET PHE SER ASN CYS TYR LEU TYR ASN SEQRES 8 A 119 LYS PRO GLY ASP ASP ILE VAL LEU MET ALA GLN ALA LEU SEQRES 9 A 119 GLU LYS LEU PHE MET GLN LYS LEU SER GLN MET PRO GLN SEQRES 10 A 119 GLU GLU SEQRES 1 B 119 SER MET ASN THR LYS LYS ASN GLY ARG LEU THR ASN GLN SEQRES 2 B 119 LEU GLN TYR LEU GLN LYS VAL VAL LEU LYS ASP LEU TRP SEQRES 3 B 119 LYS HIS SER PHE SER TRP PRO PHE GLN ARG PRO VAL ASP SEQRES 4 B 119 ALA VAL LYS LEU GLN LEU PRO ASP TYR TYR THR ILE ILE SEQRES 5 B 119 LYS ASN PRO MET ASP LEU ASN THR ILE LYS LYS ARG LEU SEQRES 6 B 119 GLU ASN LYS TYR TYR ALA LYS ALA SER GLU CYS ILE GLU SEQRES 7 B 119 ASP PHE ASN THR MET PHE SER ASN CYS TYR LEU TYR ASN SEQRES 8 B 119 LYS PRO GLY ASP ASP ILE VAL LEU MET ALA GLN ALA LEU SEQRES 9 B 119 GLU LYS LEU PHE MET GLN LYS LEU SER GLN MET PRO GLN SEQRES 10 B 119 GLU GLU SEQRES 1 C 119 SER MET ASN THR LYS LYS ASN GLY ARG LEU THR ASN GLN SEQRES 2 C 119 LEU GLN TYR LEU GLN LYS VAL VAL LEU LYS ASP LEU TRP SEQRES 3 C 119 LYS HIS SER PHE SER TRP PRO PHE GLN ARG PRO VAL ASP SEQRES 4 C 119 ALA VAL LYS LEU GLN LEU PRO ASP TYR TYR THR ILE ILE SEQRES 5 C 119 LYS ASN PRO MET ASP LEU ASN THR ILE LYS LYS ARG LEU SEQRES 6 C 119 GLU ASN LYS TYR TYR ALA LYS ALA SER GLU CYS ILE GLU SEQRES 7 C 119 ASP PHE ASN THR MET PHE SER ASN CYS TYR LEU TYR ASN SEQRES 8 C 119 LYS PRO GLY ASP ASP ILE VAL LEU MET ALA GLN ALA LEU SEQRES 9 C 119 GLU LYS LEU PHE MET GLN LYS LEU SER GLN MET PRO GLN SEQRES 10 C 119 GLU GLU FORMUL 4 HOH *253(H2 O) HELIX 1 1 ARG A 27 VAL A 38 1 12 HELIX 2 2 VAL A 38 HIS A 46 1 9 HELIX 3 3 SER A 49 GLN A 53 5 5 HELIX 4 4 GLN A 62 LYS A 71 1 10 HELIX 5 5 ASP A 75 ASN A 85 1 11 HELIX 6 6 LYS A 90 ASN A 109 1 20 HELIX 7 7 ASP A 113 GLN A 132 1 20 HELIX 8 8 THR B 29 VAL B 38 1 10 HELIX 9 9 VAL B 38 LYS B 45 1 8 HELIX 10 10 SER B 49 GLN B 53 5 5 HELIX 11 11 GLN B 62 LYS B 71 1 10 HELIX 12 12 ASP B 75 ASN B 85 1 11 HELIX 13 13 LYS B 90 TYR B 108 1 19 HELIX 14 14 ASP B 113 GLN B 132 1 20 HELIX 15 15 ASN C 30 VAL C 38 1 9 HELIX 16 16 VAL C 38 HIS C 46 1 9 HELIX 17 17 SER C 49 GLN C 53 5 5 HELIX 18 18 GLN C 62 LYS C 71 1 10 HELIX 19 19 ASP C 75 ASN C 85 1 11 HELIX 20 20 LYS C 90 TYR C 108 1 19 HELIX 21 21 ASP C 113 GLN C 132 1 20 CISPEP 1 ARG A 54 PRO A 55 0 -0.91 CISPEP 2 ARG B 54 PRO B 55 0 -3.34 CISPEP 3 ARG C 54 PRO C 55 0 -2.11 CRYST1 42.935 92.679 100.107 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023291 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009989 0.00000