PDB Short entry for 2RGL HEADER HYDROLASE 04-OCT-07 2RGL TITLE RICE BGLU1 BETA-GLUCOSIDASE, A PLANT EXOGLUCANASE/BETA-GLUCOSIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES UNP 29-504; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_TAXID: 39947; SOURCE 4 STRAIN: ORION; SOURCE 5 GENE: OS3BGLU7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32A+ KEYWDS BETA-ALPHA-BARRELS, GLYCOSIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.CHUENCHOR,J.R.KETUDAT CAIRNS,S.PENGTHAISONG,R.C.ROBINSON, AUTHOR 2 J.YUVANIYAMA,C.-J.CHEN REVDAT 5 25-OCT-23 2RGL 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2RGL 1 VERSN REVDAT 3 24-FEB-09 2RGL 1 VERSN REVDAT 2 25-MAR-08 2RGL 1 JRNL REVDAT 1 12-FEB-08 2RGL 0 JRNL AUTH W.CHUENCHOR,S.PENGTHAISONG,R.C.ROBINSON,J.YUVANIYAMA, JRNL AUTH 2 W.OONANANT,D.R.BEVAN,A.ESEN,C.J.CHEN,R.OPASSIRI,J.SVASTI, JRNL AUTH 3 J.R.K.CAIRNS JRNL TITL STRUCTURAL INSIGHTS INTO RICE BGLU1 BETA-GLUCOSIDASE JRNL TITL 2 OLIGOSACCHARIDE HYDROLYSIS AND TRANSGLYCOSYLATION JRNL REF J.MOL.BIOL. V. 377 1200 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18308333 JRNL DOI 10.1016/J.JMB.2008.01.076 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2592 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3653 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7602 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 1187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.280 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.597 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7878 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10706 ; 1.308 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 940 ; 5.925 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 400 ;33.257 ;23.650 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1204 ;12.300 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;20.913 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1080 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6204 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3928 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5314 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1053 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.011 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 51 ; 0.186 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4795 ; 0.444 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7482 ; 0.770 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3662 ; 1.333 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3224 ; 2.074 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 476 1 REMARK 3 1 B 6 B 476 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 3801 ; 0.02 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 3801 ; 0.06 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98008 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53040 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CBG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG MME 5000, 0.17M AMMONIUM REMARK 280 SULFATE, 0.1M MES, PH 6.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.02550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.51000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.33350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.51000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.02550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.33350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A -4 REMARK 465 MET A -3 REMARK 465 ALA A -2 REMARK 465 ASP A -1 REMARK 465 VAL A 0 REMARK 465 VAL A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 ASN A 5 REMARK 465 ALA B -4 REMARK 465 MET B -3 REMARK 465 ALA B -2 REMARK 465 ASP B -1 REMARK 465 VAL B 0 REMARK 465 VAL B 1 REMARK 465 PRO B 2 REMARK 465 LYS B 3 REMARK 465 PRO B 4 REMARK 465 ASN B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 63 -128.58 51.70 REMARK 500 ASP A 186 -63.08 -101.08 REMARK 500 ASN A 203 101.07 -167.24 REMARK 500 LYS A 289 -127.64 58.15 REMARK 500 ALA A 354 -159.63 -75.55 REMARK 500 GLU A 440 58.71 -90.34 REMARK 500 TRP A 441 -118.02 47.67 REMARK 500 ALA B 63 -126.37 52.41 REMARK 500 ASP B 132 50.32 -117.12 REMARK 500 ASP B 186 -63.55 -101.39 REMARK 500 ASN B 203 102.06 -166.34 REMARK 500 LYS B 289 -124.83 54.55 REMARK 500 ALA B 354 -158.74 -75.51 REMARK 500 TRP B 441 -115.69 46.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 65 OD2 REMARK 620 2 HIS A 68 ND1 117.6 REMARK 620 3 ASP B 65 OD2 95.4 101.3 REMARK 620 4 HIS B 68 ND1 102.1 119.5 119.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RGM RELATED DB: PDB DBREF 2RGL A 1 476 UNP Q42975 Q42975_ORYSJ 29 504 DBREF 2RGL B 1 476 UNP Q42975 Q42975_ORYSJ 29 504 SEQADV 2RGL ALA A -4 UNP Q42975 EXPRESSION TAG SEQADV 2RGL MET A -3 UNP Q42975 EXPRESSION TAG SEQADV 2RGL ALA A -2 UNP Q42975 EXPRESSION TAG SEQADV 2RGL ASP A -1 UNP Q42975 EXPRESSION TAG SEQADV 2RGL VAL A 0 UNP Q42975 EXPRESSION TAG SEQADV 2RGL ALA B -4 UNP Q42975 EXPRESSION TAG SEQADV 2RGL MET B -3 UNP Q42975 EXPRESSION TAG SEQADV 2RGL ALA B -2 UNP Q42975 EXPRESSION TAG SEQADV 2RGL ASP B -1 UNP Q42975 EXPRESSION TAG SEQADV 2RGL VAL B 0 UNP Q42975 EXPRESSION TAG SEQRES 1 A 481 ALA MET ALA ASP VAL VAL PRO LYS PRO ASN TRP LEU GLY SEQRES 2 A 481 GLY LEU SER ARG ALA ALA PHE PRO LYS ARG PHE VAL PHE SEQRES 3 A 481 GLY THR VAL THR SER ALA TYR GLN VAL GLU GLY MET ALA SEQRES 4 A 481 ALA SER GLY GLY ARG GLY PRO SER ILE TRP ASP ALA PHE SEQRES 5 A 481 ALA HIS THR PRO GLY ASN VAL ALA GLY ASN GLN ASN GLY SEQRES 6 A 481 ASP VAL ALA THR ASP GLN TYR HIS ARG TYR LYS GLU ASP SEQRES 7 A 481 VAL ASN LEU MET LYS SER LEU ASN PHE ASP ALA TYR ARG SEQRES 8 A 481 PHE SER ILE SER TRP SER ARG ILE PHE PRO ASP GLY GLU SEQRES 9 A 481 GLY ARG VAL ASN GLN GLU GLY VAL ALA TYR TYR ASN ASN SEQRES 10 A 481 LEU ILE ASN TYR LEU LEU GLN LYS GLY ILE THR PRO TYR SEQRES 11 A 481 VAL ASN LEU TYR HIS TYR ASP LEU PRO LEU ALA LEU GLU SEQRES 12 A 481 LYS LYS TYR GLY GLY TRP LEU ASN ALA LYS MET ALA ASP SEQRES 13 A 481 LEU PHE THR GLU TYR ALA ASP PHE CYS PHE LYS THR PHE SEQRES 14 A 481 GLY ASN ARG VAL LYS HIS TRP PHE THR PHE ASN GLU PRO SEQRES 15 A 481 ARG ILE VAL ALA LEU LEU GLY TYR ASP GLN GLY THR ASN SEQRES 16 A 481 PRO PRO LYS ARG CYS THR LYS CYS ALA ALA GLY GLY ASN SEQRES 17 A 481 SER ALA THR GLU PRO TYR ILE VAL ALA HIS ASN PHE LEU SEQRES 18 A 481 LEU SER HIS ALA ALA ALA VAL ALA ARG TYR ARG THR LYS SEQRES 19 A 481 TYR GLN ALA ALA GLN GLN GLY LYS VAL GLY ILE VAL LEU SEQRES 20 A 481 ASP PHE ASN TRP TYR GLU ALA LEU SER ASN SER THR GLU SEQRES 21 A 481 ASP GLN ALA ALA ALA GLN ARG ALA ARG ASP PHE HIS ILE SEQRES 22 A 481 GLY TRP TYR LEU ASP PRO LEU ILE ASN GLY HIS TYR PRO SEQRES 23 A 481 GLN ILE MET GLN ASP LEU VAL LYS ASP ARG LEU PRO LYS SEQRES 24 A 481 PHE THR PRO GLU GLN ALA ARG LEU VAL LYS GLY SER ALA SEQRES 25 A 481 ASP TYR ILE GLY ILE ASN GLN TYR THR ALA SER TYR MET SEQRES 26 A 481 LYS GLY GLN GLN LEU MET GLN GLN THR PRO THR SER TYR SEQRES 27 A 481 SER ALA ASP TRP GLN VAL THR TYR VAL PHE ALA LYS ASN SEQRES 28 A 481 GLY LYS PRO ILE GLY PRO GLN ALA ASN SER ASN TRP LEU SEQRES 29 A 481 TYR ILE VAL PRO TRP GLY MET TYR GLY CYS VAL ASN TYR SEQRES 30 A 481 ILE LYS GLN LYS TYR GLY ASN PRO THR VAL VAL ILE THR SEQRES 31 A 481 GLU ASN GLY MET ASP GLN PRO ALA ASN LEU SER ARG ASP SEQRES 32 A 481 GLN TYR LEU ARG ASP THR THR ARG VAL HIS PHE TYR ARG SEQRES 33 A 481 SER TYR LEU THR GLN LEU LYS LYS ALA ILE ASP GLU GLY SEQRES 34 A 481 ALA ASN VAL ALA GLY TYR PHE ALA TRP SER LEU LEU ASP SEQRES 35 A 481 ASN PHE GLU TRP LEU SER GLY TYR THR SER LYS PHE GLY SEQRES 36 A 481 ILE VAL TYR VAL ASP PHE ASN THR LEU GLU ARG HIS PRO SEQRES 37 A 481 LYS ALA SER ALA TYR TRP PHE ARG ASP MET LEU LYS HIS SEQRES 1 B 481 ALA MET ALA ASP VAL VAL PRO LYS PRO ASN TRP LEU GLY SEQRES 2 B 481 GLY LEU SER ARG ALA ALA PHE PRO LYS ARG PHE VAL PHE SEQRES 3 B 481 GLY THR VAL THR SER ALA TYR GLN VAL GLU GLY MET ALA SEQRES 4 B 481 ALA SER GLY GLY ARG GLY PRO SER ILE TRP ASP ALA PHE SEQRES 5 B 481 ALA HIS THR PRO GLY ASN VAL ALA GLY ASN GLN ASN GLY SEQRES 6 B 481 ASP VAL ALA THR ASP GLN TYR HIS ARG TYR LYS GLU ASP SEQRES 7 B 481 VAL ASN LEU MET LYS SER LEU ASN PHE ASP ALA TYR ARG SEQRES 8 B 481 PHE SER ILE SER TRP SER ARG ILE PHE PRO ASP GLY GLU SEQRES 9 B 481 GLY ARG VAL ASN GLN GLU GLY VAL ALA TYR TYR ASN ASN SEQRES 10 B 481 LEU ILE ASN TYR LEU LEU GLN LYS GLY ILE THR PRO TYR SEQRES 11 B 481 VAL ASN LEU TYR HIS TYR ASP LEU PRO LEU ALA LEU GLU SEQRES 12 B 481 LYS LYS TYR GLY GLY TRP LEU ASN ALA LYS MET ALA ASP SEQRES 13 B 481 LEU PHE THR GLU TYR ALA ASP PHE CYS PHE LYS THR PHE SEQRES 14 B 481 GLY ASN ARG VAL LYS HIS TRP PHE THR PHE ASN GLU PRO SEQRES 15 B 481 ARG ILE VAL ALA LEU LEU GLY TYR ASP GLN GLY THR ASN SEQRES 16 B 481 PRO PRO LYS ARG CYS THR LYS CYS ALA ALA GLY GLY ASN SEQRES 17 B 481 SER ALA THR GLU PRO TYR ILE VAL ALA HIS ASN PHE LEU SEQRES 18 B 481 LEU SER HIS ALA ALA ALA VAL ALA ARG TYR ARG THR LYS SEQRES 19 B 481 TYR GLN ALA ALA GLN GLN GLY LYS VAL GLY ILE VAL LEU SEQRES 20 B 481 ASP PHE ASN TRP TYR GLU ALA LEU SER ASN SER THR GLU SEQRES 21 B 481 ASP GLN ALA ALA ALA GLN ARG ALA ARG ASP PHE HIS ILE SEQRES 22 B 481 GLY TRP TYR LEU ASP PRO LEU ILE ASN GLY HIS TYR PRO SEQRES 23 B 481 GLN ILE MET GLN ASP LEU VAL LYS ASP ARG LEU PRO LYS SEQRES 24 B 481 PHE THR PRO GLU GLN ALA ARG LEU VAL LYS GLY SER ALA SEQRES 25 B 481 ASP TYR ILE GLY ILE ASN GLN TYR THR ALA SER TYR MET SEQRES 26 B 481 LYS GLY GLN GLN LEU MET GLN GLN THR PRO THR SER TYR SEQRES 27 B 481 SER ALA ASP TRP GLN VAL THR TYR VAL PHE ALA LYS ASN SEQRES 28 B 481 GLY LYS PRO ILE GLY PRO GLN ALA ASN SER ASN TRP LEU SEQRES 29 B 481 TYR ILE VAL PRO TRP GLY MET TYR GLY CYS VAL ASN TYR SEQRES 30 B 481 ILE LYS GLN LYS TYR GLY ASN PRO THR VAL VAL ILE THR SEQRES 31 B 481 GLU ASN GLY MET ASP GLN PRO ALA ASN LEU SER ARG ASP SEQRES 32 B 481 GLN TYR LEU ARG ASP THR THR ARG VAL HIS PHE TYR ARG SEQRES 33 B 481 SER TYR LEU THR GLN LEU LYS LYS ALA ILE ASP GLU GLY SEQRES 34 B 481 ALA ASN VAL ALA GLY TYR PHE ALA TRP SER LEU LEU ASP SEQRES 35 B 481 ASN PHE GLU TRP LEU SER GLY TYR THR SER LYS PHE GLY SEQRES 36 B 481 ILE VAL TYR VAL ASP PHE ASN THR LEU GLU ARG HIS PRO SEQRES 37 B 481 LYS ALA SER ALA TYR TRP PHE ARG ASP MET LEU LYS HIS HET ZN A1001 1 HET SO4 A1002 5 HET MES A1003 12 HET GOL A1004 6 HET SO4 B1002 5 HET MES B1003 12 HET GOL B1004 6 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN ZN 2+ FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 MES 2(C6 H13 N O4 S) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 10 HOH *1187(H2 O) HELIX 1 1 SER A 11 PHE A 15 5 5 HELIX 2 2 SER A 26 GLU A 31 1 6 HELIX 3 3 SER A 42 HIS A 49 1 8 HELIX 4 4 VAL A 54 GLN A 58 5 5 HELIX 5 5 ASP A 65 LEU A 80 1 16 HELIX 6 6 SER A 90 PHE A 95 1 6 HELIX 7 7 ASN A 103 LYS A 120 1 18 HELIX 8 8 PRO A 134 GLY A 142 1 9 HELIX 9 9 GLY A 143 ALA A 147 5 5 HELIX 10 10 LYS A 148 GLY A 165 1 18 HELIX 11 11 GLU A 176 ASP A 186 1 11 HELIX 12 12 THR A 206 TYR A 230 1 25 HELIX 13 13 TYR A 230 GLN A 235 1 6 HELIX 14 14 SER A 253 ILE A 268 1 16 HELIX 15 15 ILE A 268 GLY A 278 1 11 HELIX 16 16 PRO A 281 LYS A 289 1 9 HELIX 17 17 ASP A 290 LEU A 292 5 3 HELIX 18 18 THR A 296 LYS A 304 1 9 HELIX 19 19 SER A 332 TRP A 337 1 6 HELIX 20 20 PRO A 363 TYR A 377 1 15 HELIX 21 21 SER A 396 ARG A 402 1 7 HELIX 22 22 ASP A 403 GLU A 423 1 21 HELIX 23 23 GLU A 440 TYR A 445 5 6 HELIX 24 24 LYS A 464 LYS A 475 1 12 HELIX 25 25 SER B 11 PHE B 15 5 5 HELIX 26 26 SER B 26 GLU B 31 1 6 HELIX 27 27 SER B 42 HIS B 49 1 8 HELIX 28 28 VAL B 54 GLN B 58 5 5 HELIX 29 29 ASP B 65 LEU B 80 1 16 HELIX 30 30 SER B 90 PHE B 95 1 6 HELIX 31 31 ASN B 103 LYS B 120 1 18 HELIX 32 32 PRO B 134 GLY B 142 1 9 HELIX 33 33 GLY B 143 ALA B 147 5 5 HELIX 34 34 LYS B 148 GLY B 165 1 18 HELIX 35 35 GLU B 176 ASP B 186 1 11 HELIX 36 36 THR B 206 TYR B 230 1 25 HELIX 37 37 TYR B 230 GLN B 235 1 6 HELIX 38 38 SER B 253 ILE B 268 1 16 HELIX 39 39 ILE B 268 GLY B 278 1 11 HELIX 40 40 PRO B 281 LYS B 289 1 9 HELIX 41 41 ASP B 290 LEU B 292 5 3 HELIX 42 42 THR B 296 LYS B 304 1 9 HELIX 43 43 SER B 332 TRP B 337 1 6 HELIX 44 44 PRO B 363 TYR B 377 1 15 HELIX 45 45 SER B 396 ARG B 402 1 7 HELIX 46 46 ASP B 403 GLU B 423 1 21 HELIX 47 47 GLU B 440 TYR B 445 5 6 HELIX 48 48 LYS B 464 LYS B 475 1 12 SHEET 1 A 9 VAL A 20 VAL A 24 0 SHEET 2 A 9 ALA A 84 SER A 88 1 O ARG A 86 N THR A 23 SHEET 3 A 9 THR A 123 ASN A 127 1 O THR A 123 N TYR A 85 SHEET 4 A 9 HIS A 170 ASN A 175 1 O PHE A 172 N VAL A 126 SHEET 5 A 9 LYS A 237 ASP A 243 1 O LYS A 237 N TRP A 171 SHEET 6 A 9 ILE A 310 ASN A 313 1 O GLY A 311 N LEU A 242 SHEET 7 A 9 VAL A 382 GLU A 386 1 O VAL A 383 N ILE A 312 SHEET 8 A 9 VAL A 427 TRP A 433 1 O ALA A 428 N VAL A 382 SHEET 9 A 9 VAL A 20 VAL A 24 1 N VAL A 20 O TYR A 430 SHEET 1 B 3 TRP A 246 ALA A 249 0 SHEET 2 B 3 ALA A 317 LYS A 321 1 O MET A 320 N GLU A 248 SHEET 3 B 3 THR A 340 VAL A 342 -1 O THR A 340 N LYS A 321 SHEET 1 C 2 ALA A 344 LYS A 345 0 SHEET 2 C 2 LYS A 348 PRO A 349 -1 O LYS A 348 N LYS A 345 SHEET 1 D 2 GLN A 391 PRO A 392 0 SHEET 2 D 2 SER A 447 LYS A 448 -1 O LYS A 448 N GLN A 391 SHEET 1 E 2 VAL A 452 VAL A 454 0 SHEET 2 E 2 ARG A 461 PRO A 463 -1 O HIS A 462 N TYR A 453 SHEET 1 F 9 VAL B 20 VAL B 24 0 SHEET 2 F 9 ALA B 84 SER B 88 1 O ARG B 86 N THR B 23 SHEET 3 F 9 THR B 123 ASN B 127 1 O THR B 123 N TYR B 85 SHEET 4 F 9 HIS B 170 ASN B 175 1 O HIS B 170 N VAL B 126 SHEET 5 F 9 LYS B 237 ASP B 243 1 O LYS B 237 N TRP B 171 SHEET 6 F 9 ILE B 310 ASN B 313 1 O GLY B 311 N LEU B 242 SHEET 7 F 9 VAL B 382 GLU B 386 1 O VAL B 383 N ILE B 312 SHEET 8 F 9 VAL B 427 TRP B 433 1 O ALA B 428 N VAL B 382 SHEET 9 F 9 VAL B 20 VAL B 24 1 N GLY B 22 O TYR B 430 SHEET 1 G 3 TRP B 246 ALA B 249 0 SHEET 2 G 3 ALA B 317 LYS B 321 1 O SER B 318 N GLU B 248 SHEET 3 G 3 THR B 340 VAL B 342 -1 O THR B 340 N LYS B 321 SHEET 1 H 2 ALA B 344 LYS B 345 0 SHEET 2 H 2 LYS B 348 PRO B 349 -1 O LYS B 348 N LYS B 345 SHEET 1 I 2 GLN B 391 PRO B 392 0 SHEET 2 I 2 SER B 447 LYS B 448 -1 O LYS B 448 N GLN B 391 SHEET 1 J 2 VAL B 452 VAL B 454 0 SHEET 2 J 2 ARG B 461 PRO B 463 -1 O HIS B 462 N TYR B 453 SSBOND 1 CYS A 195 CYS A 198 1555 1555 2.04 SSBOND 2 CYS B 195 CYS B 198 1555 1555 2.04 LINK OD2 ASP A 65 ZN ZN A1001 1555 1555 2.01 LINK ND1 HIS A 68 ZN ZN A1001 1555 1555 2.19 LINK ZN ZN A1001 OD2 ASP B 65 1555 1555 2.01 LINK ZN ZN A1001 ND1 HIS B 68 1555 1555 2.16 CISPEP 1 PRO A 191 PRO A 192 0 0.48 CISPEP 2 TRP A 433 SER A 434 0 3.12 CISPEP 3 PRO B 191 PRO B 192 0 1.08 CISPEP 4 TRP B 433 SER B 434 0 5.97 SITE 1 AC1 4 ASP A 65 HIS A 68 ASP B 65 HIS B 68 SITE 1 AC2 5 THR A 163 ASN A 166 ARG A 167 HOH A1047 SITE 2 AC2 5 HOH A1216 SITE 1 AC3 6 THR B 163 ASN B 166 ARG B 167 HOH B1047 SITE 2 AC3 6 HOH B1479 HOH B1565 SITE 1 AC4 9 GLY A 278 HIS A 279 TYR A 280 GLN A 285 SITE 2 AC4 9 LYS A 294 PHE A 295 ALA A 300 HOH A1069 SITE 3 AC4 9 HOH A1300 SITE 1 AC5 9 GLY B 278 HIS B 279 TYR B 280 GLN B 285 SITE 2 AC5 9 LYS B 294 PHE B 295 ALA B 300 HOH B1098 SITE 3 AC5 9 HOH B1310 SITE 1 AC6 11 GLN A 29 GLU A 176 TYR A 315 GLU A 386 SITE 2 AC6 11 TRP A 433 GLU A 440 TRP A 441 PHE A 449 SITE 3 AC6 11 HOH A1072 HOH A1184 HOH A1353 SITE 1 AC7 10 GLN B 29 GLU B 176 TYR B 315 GLU B 386 SITE 2 AC7 10 TRP B 433 GLU B 440 TRP B 441 PHE B 449 SITE 3 AC7 10 HOH B1529 HOH B1530 CRYST1 80.051 100.667 127.020 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012492 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007873 0.00000