PDB Short entry for 2RGR HEADER ISOMERASE/DNA 04-OCT-07 2RGR TITLE TOPOISOMERASE IIA BOUND TO G-SEGMENT DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA; COMPND 3 CHAIN: C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA; COMPND 7 CHAIN: D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA TOPOISOMERASE 2; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: DNA BINDING AND CLEAVAGE DOMAIN (RESIDUES 419-1177); COMPND 13 SYNONYM: DNA TOPOISOMERASE II; COMPND 14 EC: 5.99.1.3; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 GENE: TOP2, TOR3; SOURCE 10 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 11 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BCY123; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PGAL KEYWDS PROTEIN-DNA COMPLEX, ATP-BINDING, DNA-BINDING, ISOMERASE, NUCLEOTIDE- KEYWDS 2 BINDING, NUCLEUS, PHOSPHOPROTEIN, TOPOISOMERASE, ISOMERASE-DNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.C.DONG,J.M.BERGER REVDAT 5 30-AUG-23 2RGR 1 REMARK LINK REVDAT 4 25-OCT-17 2RGR 1 REMARK REVDAT 3 24-FEB-09 2RGR 1 VERSN REVDAT 2 08-JAN-08 2RGR 1 JRNL REVDAT 1 25-DEC-07 2RGR 0 JRNL AUTH K.C.DONG,J.M.BERGER JRNL TITL STRUCTURAL BASIS FOR GATE-DNA RECOGNITION AND BENDING BY JRNL TITL 2 TYPE IIA TOPOISOMERASES. JRNL REF NATURE V. 450 1201 2007 JRNL REFN ISSN 0028-0836 JRNL PMID 18097402 JRNL DOI 10.1038/NATURE06396 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2380 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.1100 - 3.0000 0.97 0 120 0.3240 0.3350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.48000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 2.95700 REMARK 3 B13 (A**2) : 1.52700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 1.402 NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RGR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000044839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3776 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49135 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1BGW, 1I7D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-20% PEG 1000, 100-250 MM MGCL2, 100 REMARK 280 MM SODIUM CACODYLATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.71750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.40050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 111.74600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.71750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.40050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 111.74600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.71750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.40050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.74600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.71750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.40050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 111.74600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14420 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 1071 REMARK 465 ASN A 1072 REMARK 465 ASP A 1073 REMARK 465 GLU A 1074 REMARK 465 ILE A 1075 REMARK 465 ALA A 1076 REMARK 465 GLU A 1077 REMARK 465 GLN A 1078 REMARK 465 ILE A 1079 REMARK 465 ASN A 1080 REMARK 465 ASP A 1081 REMARK 465 VAL A 1082 REMARK 465 LYS A 1083 REMARK 465 GLY A 1084 REMARK 465 ALA A 1085 REMARK 465 THR A 1086 REMARK 465 SER A 1087 REMARK 465 ASP A 1088 REMARK 465 GLU A 1089 REMARK 465 GLU A 1090 REMARK 465 ASP A 1091 REMARK 465 GLU A 1092 REMARK 465 GLU A 1093 REMARK 465 SER A 1094 REMARK 465 SER A 1095 REMARK 465 HIS A 1096 REMARK 465 GLU A 1097 REMARK 465 ASP A 1098 REMARK 465 THR A 1099 REMARK 465 GLU A 1100 REMARK 465 ASN A 1101 REMARK 465 VAL A 1102 REMARK 465 ILE A 1103 REMARK 465 ASN A 1104 REMARK 465 GLY A 1105 REMARK 465 PRO A 1106 REMARK 465 GLU A 1107 REMARK 465 GLU A 1108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DC D 17 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 585 OE1 GLU A 589 2.06 REMARK 500 OE1 GLN A 599 OE1 GLU A 810 2.13 REMARK 500 OE2 GLU A 449 O HOH A 31 2.14 REMARK 500 NE1 TRP A 872 OE2 GLU A 902 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG C 9 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG C 12 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DT C 14 O4' - C4' - C3' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT C 14 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DT C 14 C4' - C3' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT C 14 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG C 15 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC D 5 O4' - C1' - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DC D 5 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES REMARK 500 DC D 8 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DC D 8 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG D 9 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC D 11 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DC D 17 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG D 18 C3' - C2' - C1' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG D 19 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 ARG A 507 N - CA - C ANGL. DEV. = 23.4 DEGREES REMARK 500 PRO A 571 C - N - CD ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO A 571 CA - N - CD ANGL. DEV. = -11.9 DEGREES REMARK 500 SER A 755 N - CA - C ANGL. DEV. = 18.8 DEGREES REMARK 500 ASN A 756 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 ASP A 938 CB - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 ASP A 938 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 ASP A 939 N - CA - CB ANGL. DEV. = 12.5 DEGREES REMARK 500 ASP A 939 N - CA - C ANGL. DEV. = -22.5 DEGREES REMARK 500 PRO A1066 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 438 2.35 -62.11 REMARK 500 LYS A 477 121.81 -30.60 REMARK 500 LEU A 504 106.88 25.85 REMARK 500 LYS A 508 -179.22 -171.90 REMARK 500 ASP A 526 32.60 -94.03 REMARK 500 PRO A 571 51.50 -102.30 REMARK 500 MET A 581 -71.11 -81.82 REMARK 500 GLU A 589 40.70 -85.60 REMARK 500 GLU A 590 -62.15 -135.07 REMARK 500 ASN A 619 -87.06 -108.77 REMARK 500 ASN A 633 -7.17 82.77 REMARK 500 LEU A 640 26.14 -78.95 REMARK 500 ALA A 641 -61.02 -140.39 REMARK 500 LYS A 668 -8.42 76.08 REMARK 500 SER A 673 -16.66 -46.09 REMARK 500 LEU A 715 46.97 -74.75 REMARK 500 VAL A 813 -156.69 -152.91 REMARK 500 ILE A 879 -66.35 -103.26 REMARK 500 LYS A 925 -25.49 -144.26 REMARK 500 ASP A 932 142.24 -171.67 REMARK 500 GLN A 936 30.83 -148.56 REMARK 500 ASP A 939 37.50 -156.17 REMARK 500 LYS A 942 87.38 -161.86 REMARK 500 PRO A1044 151.38 -48.91 REMARK 500 PHE A1057 124.54 -39.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 1 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 45 O REMARK 620 2 HOH A 30 O 100.3 REMARK 620 3 HOH A 31 O 91.6 98.9 REMARK 620 4 HOH A 32 O 80.9 94.1 166.0 REMARK 620 5 ASP A 528 OD2 75.6 160.2 100.6 66.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS A PRO -> LEU SEQUENCE CONFLICT AT RESIDUE 547 IN REMARK 999 UNIPROT DATABASE. DBREF 2RGR A 419 1177 UNP P06786 TOP2_YEAST 419 1177 DBREF 2RGR C 1 15 PDB 2RGR 2RGR 1 15 DBREF 2RGR D 1 19 PDB 2RGR 2RGR 1 19 SEQADV 2RGR LEU A 547 UNP P06786 PRO 547 SEE REMARK 999 SEQRES 1 C 15 DC DC DG DA DG DG DA DT DG DA DC DG DA SEQRES 2 C 15 DT DG SEQRES 1 D 19 DC DG DC DG DC DA DT DC DG DT DC DA DT SEQRES 2 D 19 DC DC DT DC DG DG SEQRES 1 A 759 ARG LYS SER ARG ILE THR ASN TYR PRO LYS LEU GLU ASP SEQRES 2 A 759 ALA ASN LYS ALA GLY THR LYS GLU GLY TYR LYS CYS THR SEQRES 3 A 759 LEU VAL LEU THR GLU GLY ASP SER ALA LEU SER LEU ALA SEQRES 4 A 759 VAL ALA GLY LEU ALA VAL VAL GLY ARG ASP TYR TYR GLY SEQRES 5 A 759 CYS TYR PRO LEU ARG GLY LYS MET LEU ASN VAL ARG GLU SEQRES 6 A 759 ALA SER ALA ASP GLN ILE LEU LYS ASN ALA GLU ILE GLN SEQRES 7 A 759 ALA ILE LYS LYS ILE MET GLY LEU GLN HIS ARG LYS LYS SEQRES 8 A 759 TYR GLU ASP THR LYS SER LEU ARG TYR GLY HIS LEU MET SEQRES 9 A 759 ILE MET THR ASP GLN ASP HIS ASP GLY SER HIS ILE LYS SEQRES 10 A 759 GLY LEU ILE ILE ASN PHE LEU GLU SER SER PHE LEU GLY SEQRES 11 A 759 LEU LEU ASP ILE GLN GLY PHE LEU LEU GLU PHE ILE THR SEQRES 12 A 759 PRO ILE ILE LYS VAL SER ILE THR LYS PRO THR LYS ASN SEQRES 13 A 759 THR ILE ALA PHE TYR ASN MET PRO ASP TYR GLU LYS TRP SEQRES 14 A 759 ARG GLU GLU GLU SER HIS LYS PHE THR TRP LYS GLN LYS SEQRES 15 A 759 TYR TYR LYS GLY LEU GLY THR SER LEU ALA GLN GLU VAL SEQRES 16 A 759 ARG GLU TYR PHE SER ASN LEU ASP ARG HIS LEU LYS ILE SEQRES 17 A 759 PHE HIS SER LEU GLN GLY ASN ASP LYS ASP TYR ILE ASP SEQRES 18 A 759 LEU ALA PHE SER LYS LYS LYS ALA ASP ASP ARG LYS GLU SEQRES 19 A 759 TRP LEU ARG GLN TYR GLU PRO GLY THR VAL LEU ASP PRO SEQRES 20 A 759 THR LEU LYS GLU ILE PRO ILE SER ASP PHE ILE ASN LYS SEQRES 21 A 759 GLU LEU ILE LEU PHE SER LEU ALA ASP ASN ILE ARG SER SEQRES 22 A 759 ILE PRO ASN VAL LEU ASP GLY PHE LYS PRO GLY GLN ARG SEQRES 23 A 759 LYS VAL LEU TYR GLY CYS PHE LYS LYS ASN LEU LYS SER SEQRES 24 A 759 GLU LEU LYS VAL ALA GLN LEU ALA PRO TYR VAL SER GLU SEQRES 25 A 759 CYS THR ALA TYR HIS HIS GLY GLU GLN SER LEU ALA GLN SEQRES 26 A 759 THR ILE ILE GLY LEU ALA GLN ASN PHE VAL GLY SER ASN SEQRES 27 A 759 ASN ILE TYR LEU LEU LEU PRO ASN GLY ALA PHE GLY THR SEQRES 28 A 759 ARG ALA THR GLY GLY LYS ASP ALA ALA ALA ALA ARG TYR SEQRES 29 A 759 ILE TYR THR GLU LEU ASN LYS LEU THR ARG LYS ILE PHE SEQRES 30 A 759 HIS PRO ALA ASP ASP PRO LEU TYR LYS TYR ILE GLN GLU SEQRES 31 A 759 ASP GLU LYS THR VAL GLU PRO GLU TRP TYR LEU PRO ILE SEQRES 32 A 759 LEU PRO MET ILE LEU VAL ASN GLY ALA GLU GLY ILE GLY SEQRES 33 A 759 THR GLY TRP SER THR TYR ILE PRO PRO PHE ASN PRO LEU SEQRES 34 A 759 GLU ILE ILE LYS ASN ILE ARG HIS LEU MET ASN ASP GLU SEQRES 35 A 759 GLU LEU GLU GLN MET HIS PRO TRP PHE ARG GLY TRP THR SEQRES 36 A 759 GLY THR ILE GLU GLU ILE GLU PRO LEU ARG TYR ARG MET SEQRES 37 A 759 TYR GLY ARG ILE GLU GLN ILE GLY ASP ASN VAL LEU GLU SEQRES 38 A 759 ILE THR GLU LEU PRO ALA ARG THR TRP THR SER THR ILE SEQRES 39 A 759 LYS GLU TYR LEU LEU LEU GLY LEU SER GLY ASN ASP LYS SEQRES 40 A 759 ILE LYS PRO TRP ILE LYS ASP MET GLU GLU GLN HIS ASP SEQRES 41 A 759 ASP ASN ILE LYS PHE ILE ILE THR LEU SER PRO GLU GLU SEQRES 42 A 759 MET ALA LYS THR ARG LYS ILE GLY PHE TYR GLU ARG PHE SEQRES 43 A 759 LYS LEU ILE SER PRO ILE SER LEU MET ASN MET VAL ALA SEQRES 44 A 759 PHE ASP PRO HIS GLY LYS ILE LYS LYS TYR ASN SER VAL SEQRES 45 A 759 ASN GLU ILE LEU SER GLU PHE TYR TYR VAL ARG LEU GLU SEQRES 46 A 759 TYR TYR GLN LYS ARG LYS ASP HIS MET SER GLU ARG LEU SEQRES 47 A 759 GLN TRP GLU VAL GLU LYS TYR SER PHE GLN VAL LYS PHE SEQRES 48 A 759 ILE LYS MET ILE ILE GLU LYS GLU LEU THR VAL THR ASN SEQRES 49 A 759 LYS PRO ARG ASN ALA ILE ILE GLN GLU LEU GLU ASN LEU SEQRES 50 A 759 GLY PHE PRO ARG PHE ASN LYS GLU GLY LYS PRO TYR TYR SEQRES 51 A 759 GLY SER PRO ASN ASP GLU ILE ALA GLU GLN ILE ASN ASP SEQRES 52 A 759 VAL LYS GLY ALA THR SER ASP GLU GLU ASP GLU GLU SER SEQRES 53 A 759 SER HIS GLU ASP THR GLU ASN VAL ILE ASN GLY PRO GLU SEQRES 54 A 759 GLU LEU TYR GLY THR TYR GLU TYR LEU LEU GLY MET ARG SEQRES 55 A 759 ILE TRP SER LEU THR LYS GLU ARG TYR GLN LYS LEU LEU SEQRES 56 A 759 LYS GLN LYS GLN GLU LYS GLU THR GLU LEU GLU ASN LEU SEQRES 57 A 759 LEU LYS LEU SER ALA LYS ASP ILE TRP ASN THR ASP LEU SEQRES 58 A 759 LYS ALA PHE GLU VAL GLY TYR GLN GLU PHE LEU GLN ARG SEQRES 59 A 759 ASP ALA GLU ALA ARG HET MG A 1 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ FORMUL 5 HOH *48(H2 O) HELIX 1 1 GLU A 439 LYS A 442 5 4 HELIX 2 2 GLY A 450 GLY A 465 1 16 HELIX 3 3 SER A 485 ASN A 492 1 8 HELIX 4 4 ASN A 492 GLY A 503 1 12 HELIX 5 5 ASP A 528 PHE A 546 1 19 HELIX 6 6 GLY A 548 ILE A 552 5 5 HELIX 7 7 ASN A 580 SER A 592 1 13 HELIX 8 8 HIS A 593 PHE A 595 5 3 HELIX 9 9 LEU A 609 LEU A 620 1 12 HELIX 10 10 ASN A 633 SER A 643 1 11 HELIX 11 11 LYS A 646 TYR A 657 1 12 HELIX 12 12 ILE A 672 ILE A 692 1 21 HELIX 13 13 LYS A 700 LYS A 713 1 14 HELIX 14 14 VAL A 721 CYS A 731 1 11 HELIX 15 15 GLY A 737 GLN A 750 1 14 HELIX 16 16 ALA A 779 TYR A 782 5 4 HELIX 17 17 LEU A 790 PHE A 795 1 6 HELIX 18 18 HIS A 796 TYR A 803 5 8 HELIX 19 19 PRO A 823 GLY A 829 1 7 HELIX 20 20 ASN A 845 ASN A 858 1 14 HELIX 21 21 TRP A 908 GLY A 922 1 15 HELIX 22 22 SER A 948 GLY A 959 1 12 HELIX 23 23 GLY A 959 PHE A 964 1 6 HELIX 24 24 SER A 989 GLU A 1035 1 47 HELIX 25 25 PRO A 1044 LEU A 1055 1 12 HELIX 26 26 TYR A 1113 GLY A 1118 1 6 HELIX 27 27 THR A 1125 LEU A 1149 1 25 HELIX 28 28 SER A 1150 ALA A 1176 1 27 SHEET 1 A 6 TYR A 469 LEU A 474 0 SHEET 2 A 6 THR A 444 GLU A 449 1 N THR A 448 O LEU A 474 SHEET 3 A 6 HIS A 520 MET A 524 1 O MET A 524 N LEU A 447 SHEET 4 A 6 LEU A 556 PHE A 559 1 O LEU A 557 N LEU A 521 SHEET 5 A 6 LEU A 624 PHE A 627 -1 O PHE A 627 N LEU A 556 SHEET 6 A 6 GLU A 669 ILE A 670 1 O ILE A 670 N ILE A 626 SHEET 1 B 3 THR A 575 PHE A 578 0 SHEET 2 B 3 ILE A 564 ILE A 568 -1 N ILE A 564 O PHE A 578 SHEET 3 B 3 TRP A 597 TYR A 601 -1 O LYS A 598 N SER A 567 SHEET 1 C 2 LEU A 719 LYS A 720 0 SHEET 2 C 2 TYR A 784 THR A 785 -1 O THR A 785 N LEU A 719 SHEET 1 D 2 TYR A 805 GLU A 808 0 SHEET 2 D 2 LYS A 811 PRO A 815 -1 O LYS A 811 N GLU A 808 SHEET 1 E 2 ALA A 830 ILE A 833 0 SHEET 2 E 2 SER A 838 ILE A 841 -1 O ILE A 841 N ALA A 830 SHEET 1 F 3 THR A 875 GLU A 878 0 SHEET 2 F 3 ARG A 883 TYR A 887 -1 O TYR A 887 N THR A 875 SHEET 3 F 3 ILE A 967 SER A 971 -1 O SER A 968 N MET A 886 SHEET 1 G 4 ARG A 889 GLY A 894 0 SHEET 2 G 4 VAL A 897 GLU A 902 -1 O VAL A 897 N ILE A 893 SHEET 3 G 4 PHE A 943 THR A 946 -1 O ILE A 945 N LEU A 898 SHEET 4 G 4 ASP A 932 GLU A 935 -1 N ASP A 932 O THR A 946 SHEET 1 H 2 MET A 975 PHE A 978 0 SHEET 2 H 2 ILE A 984 TYR A 987 -1 O TYR A 987 N MET A 975 SHEET 1 I 2 ARG A1059 PHE A1060 0 SHEET 2 I 2 PRO A1066 TYR A1067 -1 O TYR A1067 N ARG A1059 LINK O HOH C 45 MG MG A 1 1555 1555 2.27 LINK MG MG A 1 O HOH A 30 1555 1555 1.91 LINK MG MG A 1 O HOH A 31 1555 1555 2.07 LINK MG MG A 1 O HOH A 32 1555 1555 2.40 LINK MG MG A 1 OD2 ASP A 528 1555 1555 2.21 CISPEP 1 ARG A 482 GLU A 483 0 -1.47 CISPEP 2 LYS A 570 PRO A 571 0 -4.29 SITE 1 AC1 7 HOH A 30 HOH A 31 HOH A 32 GLU A 449 SITE 2 AC1 7 ASP A 526 ASP A 528 HOH C 45 CRYST1 85.435 126.801 223.492 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004474 0.00000