PDB Short entry for 2RJL HEADER CYTOKINE 15-OCT-07 2RJL TITLE CRYSTAL STRUCTURE OF HUMAN TL1A EXTRACELLULAR DOMAIN C95S/C135S MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TNF SUPERFAMILY LIGAND TL1A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMAN TL1A EXTRACELLULAR DOMAIN; COMPND 5 SYNONYM: TUMOR NECROSIS FACTOR LIGAND, SUPERFAMILY, MEMBER 15; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: TNFSF15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-AI; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS TL1A, TNFSF, CYTOKINE, MUTANT, MEMBRANE, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZHAN,Y.PATSKOVSKY,Q.YAN,W.SHI,R.TORO,J.BONANNO,S.G.NATHENSON, AUTHOR 2 S.C.ALMO REVDAT 5 30-AUG-23 2RJL 1 REMARK REVDAT 4 20-OCT-21 2RJL 1 SEQADV REVDAT 3 29-SEP-09 2RJL 1 JRNL REVDAT 2 24-FEB-09 2RJL 1 VERSN REVDAT 1 26-AUG-08 2RJL 0 JRNL AUTH C.ZHAN,Q.YAN,Y.PATSKOVSKY,Z.LI,R.TORO,A.MEYER,H.CHENG, JRNL AUTH 2 M.BRENOWITZ,S.G.NATHENSON,S.C.ALMO JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF THE HUMAN JRNL TITL 2 TL1A ECTODOMAIN. JRNL REF BIOCHEMISTRY V. 48 7636 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19522538 JRNL DOI 10.1021/BI900031W REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 17323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 553 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1132 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.880 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1178 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1599 ; 1.281 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 142 ; 9.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;40.640 ;24.038 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 202 ;15.045 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;24.581 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 179 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 885 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 505 ; 0.194 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 829 ; 0.317 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 145 ; 0.172 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.169 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.169 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 730 ; 6.612 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1161 ; 8.870 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 511 ; 9.621 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 437 ;11.415 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044937. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17934 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 21.00 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.10200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.6250 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : 0.86100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QE3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM CACL2, 100 MM TRIS, PH 8.50, 20% REMARK 280 METHONAL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 58.79200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.79200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.79200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.79200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 58.79200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.79200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 58.79200 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 58.79200 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 58.79200 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 58.79200 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 58.79200 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 58.79200 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 58.79200 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 58.79200 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 58.79200 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 58.79200 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 58.79200 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 58.79200 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 88.18800 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 29.39600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 29.39600 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 88.18800 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 88.18800 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 88.18800 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 29.39600 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 29.39600 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 88.18800 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 29.39600 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 88.18800 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 29.39600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 88.18800 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 29.39600 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 29.39600 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 29.39600 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 88.18800 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 29.39600 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 88.18800 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 88.18800 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 88.18800 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 29.39600 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 29.39600 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 88.18800 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 88.18800 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 29.39600 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 29.39600 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 29.39600 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 29.39600 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 88.18800 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 29.39600 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 88.18800 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 29.39600 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 88.18800 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 88.18800 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 88.18800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5600 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -58.79200 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 -58.79200 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 58.79200 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 -58.79200 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 200 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 235 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 GLU A 9 REMARK 465 PHE A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 GLN A 15 REMARK 465 GLN A 16 REMARK 465 VAL A 17 REMARK 465 TYR A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 LEU A 21 REMARK 465 ARG A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 PHE A 43 REMARK 465 LYS A 44 REMARK 465 ASN A 45 REMARK 465 THR A 92 REMARK 465 SER A 93 REMARK 465 GLU A 94 REMARK 465 SER A 95 REMARK 465 SER A 96 REMARK 465 GLU A 97 REMARK 465 ILE A 98 REMARK 465 ARG A 99 REMARK 465 GLN A 100 REMARK 465 ALA A 101 REMARK 465 GLY A 102 REMARK 465 ARG A 103 REMARK 465 PRO A 104 REMARK 465 ASN A 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 55 -25.76 -140.08 REMARK 500 ARG A 64 -6.28 87.22 REMARK 500 ASN A 140 53.29 -98.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 138 SER A 139 -31.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QE3 RELATED DB: PDB REMARK 900 THIS IS THE C95S/C135S MUTANT OF THE WILD TYPE PROTEIN (2QE3) REMARK 900 RELATED ID: 2RJK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN TL1A EXTRACELLULAR DOMAIN C95S/C135S REMARK 900 MUTANT DBREF 2RJL A 5 184 UNP Q8NFE9 Q8NFE9_HUMAN 72 251 SEQADV 2RJL GLY A 1 UNP Q8NFE9 EXPRESSION TAG SEQADV 2RJL SER A 2 UNP Q8NFE9 EXPRESSION TAG SEQADV 2RJL HIS A 3 UNP Q8NFE9 EXPRESSION TAG SEQADV 2RJL MET A 4 UNP Q8NFE9 EXPRESSION TAG SEQADV 2RJL SER A 95 UNP Q8NFE9 CYS 162 ENGINEERED MUTATION SEQADV 2RJL SER A 135 UNP Q8NFE9 CYS 202 ENGINEERED MUTATION SEQRES 1 A 184 GLY SER HIS MET LEU LYS GLY GLN GLU PHE ALA PRO SER SEQRES 2 A 184 HIS GLN GLN VAL TYR ALA PRO LEU ARG ALA ASP GLY ASP SEQRES 3 A 184 LYS PRO ARG ALA HIS LEU THR VAL VAL ARG GLN THR PRO SEQRES 4 A 184 THR GLN HIS PHE LYS ASN GLN PHE PRO ALA LEU HIS TRP SEQRES 5 A 184 GLU HIS GLU LEU GLY LEU ALA PHE THR LYS ASN ARG MET SEQRES 6 A 184 ASN TYR THR ASN LYS PHE LEU LEU ILE PRO GLU SER GLY SEQRES 7 A 184 ASP TYR PHE ILE TYR SER GLN VAL THR PHE ARG GLY MET SEQRES 8 A 184 THR SER GLU SER SER GLU ILE ARG GLN ALA GLY ARG PRO SEQRES 9 A 184 ASN LYS PRO ASP SER ILE THR VAL VAL ILE THR LYS VAL SEQRES 10 A 184 THR ASP SER TYR PRO GLU PRO THR GLN LEU LEU MET GLY SEQRES 11 A 184 THR LYS SER VAL SER GLU VAL GLY SER ASN TRP PHE GLN SEQRES 12 A 184 PRO ILE TYR LEU GLY ALA MET PHE SER LEU GLN GLU GLY SEQRES 13 A 184 ASP LYS LEU MET VAL ASN VAL SER ASP ILE SER LEU VAL SEQRES 14 A 184 ASP TYR THR LYS GLU ASP LYS THR PHE PHE GLY ALA PHE SEQRES 15 A 184 LEU LEU FORMUL 2 HOH *72(H2 O) HELIX 1 1 ASP A 165 VAL A 169 5 5 SHEET 1 A 3 TRP A 52 GLU A 53 0 SHEET 2 A 3 ARG A 29 VAL A 34 -1 N THR A 33 O GLU A 53 SHEET 3 A 3 PHE A 60 LYS A 62 -1 O PHE A 60 N HIS A 31 SHEET 1 B 5 TRP A 52 GLU A 53 0 SHEET 2 B 5 ARG A 29 VAL A 34 -1 N THR A 33 O GLU A 53 SHEET 3 B 5 PHE A 178 LEU A 183 -1 O PHE A 179 N LEU A 32 SHEET 4 B 5 GLY A 78 ARG A 89 -1 N TYR A 83 O GLY A 180 SHEET 5 B 5 PHE A 142 LEU A 153 -1 O GLN A 143 N PHE A 88 SHEET 1 C 5 ASN A 66 THR A 68 0 SHEET 2 C 5 PHE A 71 LEU A 73 -1 O LEU A 73 N ASN A 66 SHEET 3 C 5 LYS A 158 VAL A 163 -1 O LEU A 159 N LEU A 72 SHEET 4 C 5 SER A 109 VAL A 117 -1 N VAL A 113 O ASN A 162 SHEET 5 C 5 THR A 125 SER A 133 -1 O GLY A 130 N VAL A 112 CRYST1 117.584 117.584 117.584 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008505 0.00000