PDB Short entry for 2RMN HEADER CELL CYCLE, ANTITUMOR PROTEIN 01-NOV-07 2RMN TITLE THE SOLUTION STRUCTURE OF THE P63 DNA-BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR PROTEIN 63; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, UNP RESIDUES 153-384; COMPND 5 SYNONYM: P63, TRANSFORMATION-RELATED PROTEIN 63, TP63, TUMOR PROTEIN COMPND 6 P73-LIKE, P73L, P51, P40, KERATINOCYTE TRANSCRIPTION FACTOR KET, COMPND 7 CHRONIC ULCERATIVE STOMATITIS PROTEIN, CUSP; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: P63; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: P20020; SOURCE 10 OTHER_DETAILS: P20020 IS AS MODIFIED PQ40 VECTOR (KLEIN ET AL., J. SOURCE 11 BIOL. CHEM., 276, 49020-7.) KEYWDS PROTEIN, BETA SANDWICH, DNA BINDING, P53 FAMILY, ACTIVATOR, KEYWDS 2 ALTERNATIVE PROMOTER USAGE, APOPTOSIS, DEVELOPMENTAL PROTEIN, KEYWDS 3 DISEASE MUTATION, DNA-BINDING, ECTODERMAL DYSPLASIA, METAL-BINDING, KEYWDS 4 NOTCH SIGNALING PATHWAY, NUCLEUS, PHOSPHORYLATION, TRANSCRIPTION, KEYWDS 5 TRANSCRIPTION REGULATION, CELL CYCLE, ANTITUMOR PROTEIN EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR A.ENTHART,H.KESSLER REVDAT 4 07-SEP-16 2RMN 1 JRNL VERSN REVDAT 3 24-FEB-09 2RMN 1 VERSN REVDAT 2 25-NOV-08 2RMN 1 SITE REVDAT 1 11-NOV-08 2RMN 0 JRNL AUTH A.ENTHART,C.KLEIN,A.DEHNER,M.COLES,G.GEMMECKER,H.KESSLER, JRNL AUTH 2 F.HAGN JRNL TITL SOLUTION STRUCTURE AND BINDING SPECIFICITY OF THE P63 DNA JRNL TITL 2 BINDING DOMAIN JRNL REF SCI REP V. 6 26707 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27225672 JRNL DOI 10.1038/SREP26707 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.16.0 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RMN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-07. REMARK 100 THE RCSB ID CODE IS RCSB150039. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7MM [U-15N] P63BDB; 50MM REMARK 210 POTASSIUM CHLORIDE; 50MM REMARK 210 POTASSIUM PHOSPHATE; 5MM DTT; 95% REMARK 210 H2O, 5% D2O; 0.7MM [U-13C; U-15N] REMARK 210 P63BDB; 50MM POTASSIUM CHLORIDE; REMARK 210 50MM POTASSIUM PHOSPHATE; 5MM REMARK 210 DTT; 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNHA; 3D HNHB; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D CNH REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.110, X-PLOR_NIH 2.16.0, REMARK 210 TALOS, XWINNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: CNH-NOESY MEANS 13C-HSQC-NOE-15N-HSQC REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 290 OD1 ASP A 292 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 117 -172.06 52.01 REMARK 500 1 ALA A 119 115.54 -168.09 REMARK 500 1 LEU A 120 -87.14 55.80 REMARK 500 1 TRP A 153 144.52 -171.44 REMARK 500 2 ALA A 119 83.36 50.10 REMARK 500 2 LEU A 120 -176.23 51.38 REMARK 500 2 THR A 147 92.44 -59.96 REMARK 500 2 TRP A 153 143.74 -171.04 REMARK 500 2 ASP A 333 79.89 59.46 REMARK 500 2 ARG A 336 161.98 55.99 REMARK 500 3 ALA A 119 -82.97 58.16 REMARK 500 3 LEU A 120 -85.78 56.10 REMARK 500 3 THR A 147 84.65 -64.13 REMARK 500 3 TRP A 153 143.48 -171.33 REMARK 500 3 ASP A 333 79.98 59.41 REMARK 500 3 ARG A 336 178.15 51.97 REMARK 500 4 TRP A 153 143.78 -171.46 REMARK 500 4 PHE A 214 75.13 54.07 REMARK 500 4 ARG A 336 94.82 51.63 REMARK 500 5 LEU A 120 -179.00 52.11 REMARK 500 5 TRP A 153 148.08 -170.75 REMARK 500 5 ASP A 333 79.85 59.51 REMARK 500 5 ALA A 334 103.80 -165.83 REMARK 500 5 ARG A 336 95.85 51.61 REMARK 500 6 ALA A 119 -163.39 50.55 REMARK 500 6 LEU A 120 -70.21 63.04 REMARK 500 6 THR A 147 44.44 -92.61 REMARK 500 6 TRP A 153 147.88 -170.59 REMARK 500 6 ARG A 212 -167.28 49.93 REMARK 500 6 GLU A 213 48.65 -167.95 REMARK 500 6 PHE A 214 75.03 52.16 REMARK 500 6 ARG A 336 -84.40 56.84 REMARK 500 7 ALA A 119 -161.04 50.02 REMARK 500 7 LEU A 120 91.13 51.69 REMARK 500 7 THR A 147 75.83 -68.22 REMARK 500 7 TRP A 153 143.66 -171.65 REMARK 500 7 ALA A 184 150.44 -49.98 REMARK 500 7 PHE A 214 75.05 52.48 REMARK 500 7 ARG A 336 -166.70 51.78 REMARK 500 8 ALA A 119 -158.73 50.69 REMARK 500 8 LEU A 120 158.93 56.77 REMARK 500 8 TRP A 153 144.02 -172.04 REMARK 500 8 PHE A 214 75.13 53.17 REMARK 500 8 ARG A 336 90.54 51.37 REMARK 500 9 ALA A 119 -84.59 57.01 REMARK 500 9 THR A 147 86.49 -62.35 REMARK 500 9 TRP A 153 144.68 -171.03 REMARK 500 9 ARG A 336 -166.59 52.58 REMARK 500 10 LEU A 120 -85.81 56.77 REMARK 500 10 THR A 147 75.42 -67.77 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 205 SG REMARK 620 2 HIS A 208 ND1 111.5 REMARK 620 3 CYS A 269 SG 115.4 108.3 REMARK 620 4 CYS A 273 SG 86.4 111.5 122.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS BASED ON REFERENCE 11 AND 12 IN THE REMARK 999 DATABASE, P63_HUMAN. DBREF 2RMN A 114 345 UNP Q9H3D4 P63_HUMAN 153 384 SEQADV 2RMN GLY A 113 UNP Q9H3D4 EXPRESSION TAG SEQRES 1 A 233 GLY SER SER THR PHE ASP ALA LEU SER PRO SER PRO ALA SEQRES 2 A 233 ILE PRO SER ASN THR ASP TYR PRO GLY PRO HIS SER PHE SEQRES 3 A 233 ASP VAL SER PHE GLN GLN SER SER THR ALA LYS SER ALA SEQRES 4 A 233 THR TRP THR TYR SER THR GLU LEU LYS LYS LEU TYR CYS SEQRES 5 A 233 GLN ILE ALA LYS THR CYS PRO ILE GLN ILE LYS VAL MET SEQRES 6 A 233 THR PRO PRO PRO GLN GLY ALA VAL ILE ARG ALA MET PRO SEQRES 7 A 233 VAL TYR LYS LYS ALA GLU HIS VAL THR GLU VAL VAL LYS SEQRES 8 A 233 ARG CYS PRO ASN HIS GLU LEU SER ARG GLU PHE ASN GLU SEQRES 9 A 233 GLY GLN ILE ALA PRO PRO SER HIS LEU ILE ARG VAL GLU SEQRES 10 A 233 GLY ASN SER HIS ALA GLN TYR VAL GLU ASP PRO ILE THR SEQRES 11 A 233 GLY ARG GLN SER VAL LEU VAL PRO TYR GLU PRO PRO GLN SEQRES 12 A 233 VAL GLY THR GLU PHE THR THR VAL LEU TYR ASN PHE MET SEQRES 13 A 233 CYS ASN SER SER CYS VAL GLY GLY MET ASN ARG ARG PRO SEQRES 14 A 233 ILE LEU ILE ILE VAL THR LEU GLU THR ARG ASP GLY GLN SEQRES 15 A 233 VAL LEU GLY ARG ARG CYS PHE GLU ALA ARG ILE CYS ALA SEQRES 16 A 233 CYS PRO GLY ARG ASP ARG LYS ALA ASP GLU ASP SER ILE SEQRES 17 A 233 ARG LYS GLN GLN VAL SER ASP SER THR LYS ASN GLY ASP SEQRES 18 A 233 ALA PHE ARG GLN ASN THR HIS GLY ILE GLN MET THR HET ZN A 1 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 LYS A 194 THR A 199 1 6 HELIX 2 2 CYS A 205 SER A 211 1 7 HELIX 3 3 CYS A 308 GLN A 324 1 17 SHEET 1 A 4 ASP A 139 SER A 141 0 SHEET 2 A 4 CYS A 170 LYS A 175 -1 O LYS A 175 N ASP A 139 SHEET 3 A 4 PHE A 260 PHE A 267 -1 O VAL A 263 N ILE A 172 SHEET 4 A 4 ILE A 226 GLU A 229 -1 N GLU A 229 O LEU A 264 SHEET 1 B 7 TRP A 153 SER A 156 0 SHEET 2 B 7 LYS A 161 CYS A 164 -1 O TYR A 163 N THR A 154 SHEET 3 B 7 VAL A 295 ILE A 305 1 O ARG A 304 N CYS A 164 SHEET 4 B 7 ILE A 282 GLU A 289 -1 N ILE A 284 O PHE A 301 SHEET 5 B 7 VAL A 185 TYR A 192 -1 N VAL A 191 O LEU A 283 SHEET 6 B 7 GLN A 245 PRO A 250 -1 O VAL A 249 N ILE A 186 SHEET 7 B 7 GLN A 235 GLU A 238 -1 N GLN A 235 O LEU A 248 LINK SG CYS A 205 ZN ZN A 1 1555 1555 2.14 LINK ND1 HIS A 208 ZN ZN A 1 1555 1555 2.20 LINK SG CYS A 269 ZN ZN A 1 1555 1555 2.17 LINK SG CYS A 273 ZN ZN A 1 1555 1555 2.22 CISPEP 1 SER A 121 PRO A 122 1 -17.11 CISPEP 2 SER A 121 PRO A 122 3 -22.07 CISPEP 3 SER A 121 PRO A 122 4 -12.45 CISPEP 4 SER A 121 PRO A 122 5 -16.02 CISPEP 5 SER A 121 PRO A 122 6 -19.97 CISPEP 6 SER A 121 PRO A 122 8 -13.07 CISPEP 7 SER A 121 PRO A 122 10 -15.42 CISPEP 8 SER A 121 PRO A 122 11 -18.59 CISPEP 9 SER A 121 PRO A 122 12 -23.64 CISPEP 10 SER A 121 PRO A 122 13 -18.71 CISPEP 11 SER A 121 PRO A 122 14 -17.82 CISPEP 12 SER A 121 PRO A 122 15 -14.71 CISPEP 13 SER A 121 PRO A 122 16 -17.37 CISPEP 14 SER A 121 PRO A 122 18 -18.26 CISPEP 15 SER A 121 PRO A 122 19 -13.49 CISPEP 16 SER A 121 PRO A 122 21 -16.82 SITE 1 AC1 4 CYS A 205 HIS A 208 CYS A 269 CYS A 273 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000