PDB Short entry for 2RMZ HEADER CELL ADHESION 04-DEC-07 2RMZ TITLE BICELLE-EMBEDDED INTEGRIN BETA3 TRANSMEMBRANE SEGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN BETA-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 712-753; COMPND 5 SYNONYM: PLATELET MEMBRANE GLYCOPROTEIN IIIA, GPIIIA, CD61 ANTIGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGB3, GP3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET31 KEYWDS TRANSMEMBRANE HELIX, ALTERNATIVE SPLICING, CELL ADHESION, DISEASE KEYWDS 2 MUTATION, GLYCOPROTEIN, HOST-VIRUS INTERACTION, INTEGRIN, KEYWDS 3 PHOSPHOPROTEIN, POLYMORPHISM, RECEPTOR EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR T.L.LAU,A.W.PARTRIDGE,M.H.GINSBERG,T.S.ULMER REVDAT 5 21-DEC-22 2RMZ 1 SEQADV REVDAT 4 10-NOV-21 2RMZ 1 REMARK SEQADV REVDAT 3 24-FEB-09 2RMZ 1 VERSN REVDAT 2 08-APR-08 2RMZ 1 JRNL REVDAT 1 18-MAR-08 2RMZ 0 JRNL AUTH T.L.LAU,A.W.PARTRIDGE,M.H.GINSBERG,T.S.ULMER JRNL TITL STRUCTURE OF THE INTEGRIN BETA3 TRANSMEMBRANE SEGMENT IN JRNL TITL 2 PHOSPHOLIPID BICELLES AND DETERGENT MICELLES JRNL REF BIOCHEMISTRY V. 47 4008 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18321071 JRNL DOI 10.1021/BI800107A REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RMZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000150049. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.2 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM [U-100% 13C; U-100% 15N; REMARK 210 80% 2H] INTEGRIN BETA-3, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D HN(CA)CO; REMARK 210 3D HNCO-J REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 21 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 693 H LEU A 697 1.39 REMARK 500 O ASP A 692 H VAL A 696 1.41 REMARK 500 O VAL A 695 H SER A 699 1.52 REMARK 500 O LYS A 689 N PRO A 691 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 686 -26.65 71.01 REMARK 500 1 LYS A 689 -100.81 43.55 REMARK 500 1 ARG A 724 -116.75 -62.00 REMARK 500 1 LYS A 725 -14.11 98.90 REMARK 500 1 GLU A 726 79.99 -62.28 REMARK 500 2 SER A 687 74.43 -178.48 REMARK 500 2 ASP A 692 -54.36 -139.75 REMARK 500 3 SER A 687 79.69 -174.02 REMARK 500 4 SER A 687 159.03 58.30 REMARK 500 4 ASP A 723 121.76 -18.64 REMARK 500 5 GLU A 726 74.50 55.79 REMARK 500 6 SER A 687 75.32 42.68 REMARK 500 6 LYS A 689 -93.48 35.77 REMARK 500 6 ASP A 692 -48.04 -140.43 REMARK 500 7 GLU A 686 131.35 57.17 REMARK 500 7 SER A 687 72.11 -159.98 REMARK 500 8 ASP A 723 95.63 -19.33 REMARK 500 10 SER A 687 79.34 43.38 REMARK 500 11 ASP A 723 -47.01 -21.44 REMARK 500 11 GLU A 726 92.36 45.13 REMARK 500 13 SER A 687 164.21 -49.52 REMARK 500 14 SER A 687 -44.33 179.05 REMARK 500 14 LYS A 689 26.98 44.70 REMARK 500 15 LYS A 689 -96.40 41.03 REMARK 500 15 ASP A 692 -46.91 -140.23 REMARK 500 16 SER A 687 71.67 -171.89 REMARK 500 17 SER A 687 81.62 -168.75 REMARK 500 17 ASP A 692 -48.93 -138.74 REMARK 500 19 GLU A 686 77.91 56.65 REMARK 500 19 SER A 687 78.72 -172.53 REMARK 500 19 ASP A 723 -85.79 -89.50 REMARK 500 20 ASP A 723 136.78 -20.52 REMARK 500 20 GLU A 726 82.79 52.08 REMARK 500 21 SER A 687 74.37 39.48 REMARK 500 21 ASP A 723 137.67 -20.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RN0 RELATED DB: PDB DBREF 2RMZ A 686 727 UNP P05106 ITB3_HUMAN 712 753 SEQADV 2RMZ PRO A 685 UNP P05106 EXPRESSION TAG SEQADV 2RMZ SER A 687 UNP P05106 CYS 713 ENGINEERED MUTATION SEQRES 1 A 43 PRO GLU SER PRO LYS GLY PRO ASP ILE LEU VAL VAL LEU SEQRES 2 A 43 LEU SER VAL MET GLY ALA ILE LEU LEU ILE GLY LEU ALA SEQRES 3 A 43 ALA LEU LEU ILE TRP LYS LEU LEU ILE THR ILE HIS ASP SEQRES 4 A 43 ARG LYS GLU PHE HELIX 1 1 ILE A 693 HIS A 722 1 30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000