PDB Short entry for 2RN5 HEADER HORMONE 06-DEC-07 2RN5 TITLE HUMAL INSULIN MUTANT B31LYS-B32ARG COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 90-110; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INSULIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 25-54; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PDBAST-RAT-N-7-1; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: INS; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PDBAST-RAT-N-7-1 KEYWDS HUMAN INSULIN MUTANT, 35% CD3CN, MONOMER, CARBOHYDRATE METABOLISM, KEYWDS 2 CLEAVAGE ON PAIR OF BASIC RESIDUES, DIABETES MELLITUS, DISEASE KEYWDS 3 MUTATION, GLUCOSE METABOLISM, HORMONE, PHARMACEUTICAL, SECRETED EXPDTA SOLUTION NMR NUMMDL 50 AUTHOR W.BOCIAN,L.KOZERSKI REVDAT 3 16-MAR-22 2RN5 1 REMARK SEQADV REVDAT 2 24-FEB-09 2RN5 1 VERSN REVDAT 1 28-OCT-08 2RN5 0 JRNL AUTH W.BOCIAN,P.BOROWICZ,J.SITKOWSKI,A.TARNOWSKA,E.BEDNAREK, JRNL AUTH 2 M.BOGIEL,L.KOZERSKI JRNL TITL NMR STRUCTURE OF BIOSYNTHETIC ENGINEERED HUMAN INSULIN JRNL TITL 2 MONOMER B31(LYS)-B32(ARG) IN WATER/ACETONITRILE SOLUTION. JRNL TITL 3 COMPARISON WITH THE SOLUTION STRUCTURE OF NATIVE HUMAN JRNL TITL 4 INSULIN MONOMER JRNL REF BIOPOLYMERS V. 89 820 2008 JRNL REFN ISSN 0006-3525 JRNL PMID 18491415 JRNL DOI 10.1002/BIP.21018 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, KOLL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RN5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1000150053. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 3.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.0MM INSULIN (CHAIN A), 2.0MM REMARK 210 INSULIN (CHAIN B), 35% CD3CN, 65% REMARK 210 D2O, CD3CN/D2O; 2.0MM INSULIN REMARK 210 (CHAIN A), 2.0MM INSULIN (CHAIN REMARK 210 B), 35% CD3CN, 65% H2O, CD3CN/H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AMBER 9 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 12 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 14 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 14 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 17 ARG B 32 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 18 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 20 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 24 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 24 ARG B 22 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 28 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 28 ARG B 22 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 30 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 31 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 31 ARG B 22 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 32 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 37 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 39 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 39 ARG B 32 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 45 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 46 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 48 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 5 -63.08 -104.30 REMARK 500 1 SER A 9 -169.04 -113.95 REMARK 500 1 VAL B 2 -51.33 79.27 REMARK 500 1 LYS B 29 29.84 40.83 REMARK 500 1 LYS B 31 -43.79 70.60 REMARK 500 2 SER A 9 -157.81 -134.42 REMARK 500 2 ASN B 3 75.05 59.23 REMARK 500 2 LYS B 31 119.46 80.87 REMARK 500 3 VAL B 2 -167.48 -129.39 REMARK 500 3 LYS B 29 -50.72 71.11 REMARK 500 3 THR B 30 -39.42 -175.37 REMARK 500 4 CYS A 11 -159.90 -117.13 REMARK 500 4 ASN B 3 64.55 65.08 REMARK 500 5 ILE A 2 -41.43 156.36 REMARK 500 5 SER A 9 -161.24 -102.15 REMARK 500 5 LYS B 31 -31.05 72.47 REMARK 500 6 ASN B 3 103.00 -168.27 REMARK 500 6 LYS B 31 143.29 84.73 REMARK 500 7 ILE A 2 -51.79 -179.74 REMARK 500 7 SER A 9 -152.87 -133.36 REMARK 500 7 VAL B 2 -50.28 73.83 REMARK 500 7 THR B 27 136.17 170.87 REMARK 500 8 ASN B 3 178.96 81.24 REMARK 500 9 ASN B 3 98.66 -162.53 REMARK 500 10 ILE A 2 -48.75 -177.16 REMARK 500 10 ASN B 3 -157.80 -85.82 REMARK 500 10 PHE B 25 114.80 -174.82 REMARK 500 11 LYS B 31 164.35 71.15 REMARK 500 12 CYS A 20 -149.56 -84.65 REMARK 500 12 LYS B 31 -28.49 75.00 REMARK 500 14 LYS B 29 -45.89 70.78 REMARK 500 14 THR B 30 -143.88 -176.08 REMARK 500 15 THR B 30 -77.01 -127.90 REMARK 500 16 LYS B 31 29.07 -149.27 REMARK 500 17 SER A 9 -164.91 -125.61 REMARK 500 17 LYS B 29 -2.25 63.46 REMARK 500 17 LYS B 31 134.56 76.57 REMARK 500 18 THR B 30 40.05 -92.30 REMARK 500 19 ASN B 3 118.21 -169.49 REMARK 500 20 THR B 30 -95.47 -130.75 REMARK 500 20 LYS B 31 24.48 -155.77 REMARK 500 21 VAL B 2 -34.65 78.37 REMARK 500 21 PHE B 25 39.82 -156.37 REMARK 500 21 PRO B 28 -178.71 -56.36 REMARK 500 21 LYS B 31 -144.00 45.42 REMARK 500 22 GLN A 5 -62.98 -103.54 REMARK 500 24 GLN A 5 -60.34 -93.26 REMARK 500 24 VAL B 2 -37.30 58.59 REMARK 500 25 THR B 30 -133.97 -156.87 REMARK 500 26 GLN A 5 -66.49 -95.16 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 ARG B 22 0.08 SIDE CHAIN REMARK 500 17 ARG B 32 0.08 SIDE CHAIN REMARK 500 20 ARG B 22 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2RN5 A 1 21 UNP P01308 INS_HUMAN 90 110 DBREF 2RN5 B 1 30 UNP P01308 INS_HUMAN 25 54 SEQADV 2RN5 LYS B 31 UNP P01308 EXPRESSION TAG SEQADV 2RN5 ARG B 32 UNP P01308 EXPRESSION TAG SEQRES 1 A 21 GLY ILE VAL GLU GLN CYS CYS THR SER ILE CYS SER LEU SEQRES 2 A 21 TYR GLN LEU GLU ASN TYR CYS ASN SEQRES 1 B 32 PHE VAL ASN GLN HIS LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 B 32 ALA LEU TYR LEU VAL CYS GLY GLU ARG GLY PHE PHE TYR SEQRES 3 B 32 THR PRO LYS THR LYS ARG HELIX 1 1 ILE A 2 CYS A 7 1 6 HELIX 2 2 LEU A 13 GLU A 17 1 5 HELIX 3 3 ASN A 18 CYS A 20 5 3 HELIX 4 4 GLY B 8 GLY B 20 1 13 HELIX 5 5 GLU B 21 GLY B 23 5 3 SHEET 1 A 2 CYS A 11 SER A 12 0 SHEET 2 A 2 ASN B 3 GLN B 4 -1 O GLN B 4 N CYS A 11 SSBOND 1 CYS A 6 CYS A 11 1555 1555 2.03 SSBOND 2 CYS A 7 CYS B 7 1555 1555 2.04 SSBOND 3 CYS A 20 CYS B 19 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000