PDB Short entry for 2RQP HEADER GENE REGULATION 04-SEP-09 2RQP TITLE THE SOLUTION STRUCTURE OF HETEROCHROMATIN PROTEIN 1-BINDING PROTEIN 74 TITLE 2 HISTONE H1 LIKE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROCHROMATIN PROTEIN 1-BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HISTONE H1 LIKE DOMAIN, RESIDUES 153-237; COMPND 5 SYNONYM: PROTEIN HP1-BP74; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HP1BP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-48B(+) KEYWDS HETEROCHROMATIN PROTEIN 1 BINDING PROTEIN, HISTONE H1, KEYWDS 2 HETEROCHROMATIN PROTEIN 1, ALTERNATIVE SPLICING, CHROMOSOMAL KEYWDS 3 PROTEIN, DNA-BINDING, NUCLEUS, PHOSPHOPROTEIN, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR S.SHIMAMOTO,H.SUGAHARA,T.OHKUBO REVDAT 4 16-MAR-22 2RQP 1 REMARK SEQADV REVDAT 3 31-MAR-10 2RQP 1 JRNL REVDAT 2 09-FEB-10 2RQP 1 JRNL REVDAT 1 29-DEC-09 2RQP 0 JRNL AUTH K.HAYASHIHARA,S.UCHIYAMA,S.SHIMAMOTO,S.KOBAYASHI,M.TOMSCHIK, JRNL AUTH 2 H.WAKAMATSU,D.NO,H.SUGAHARA,N.HORI,M.NODA,T.OHKUBO, JRNL AUTH 3 J.ZLATANOVA,S.MATSUNAGA,K.FUKUI JRNL TITL THE MIDDLE REGION OF AN HP1-BINDING PROTEIN, HP1-BP74, JRNL TITL 2 ASSOCIATES WITH LINKER DNA AT THE ENTRY/EXIT SITE OF JRNL TITL 3 NUCLEOSOMAL DNA JRNL REF J.BIOL.CHEM. V. 285 6498 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20042602 JRNL DOI 10.1074/JBC.M109.092833 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, CNS 1.1 REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS 1.1) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000150171. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM SODIUM PHOSPHATE-1; 150MM REMARK 210 SODIUM CHLORIDE-2; 5MM BETA- REMARK 210 MERCAPTOETHANOL-3; 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCACB; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 208 H ASN A 212 1.50 REMARK 500 O LYS A 204 H LYS A 208 1.57 REMARK 500 O CYS A 172 H GLY A 177 1.58 REMARK 500 O ILE A 187 O TYR A 191 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 154 85.06 60.42 REMARK 500 1 PHE A 173 -31.81 -37.56 REMARK 500 1 ARG A 199 22.40 -76.35 REMARK 500 1 SER A 225 -159.81 -80.50 REMARK 500 1 SER A 227 -176.60 60.04 REMARK 500 1 VAL A 231 -177.91 52.97 REMARK 500 1 ARG A 235 86.73 -58.15 REMARK 500 2 ALA A 154 94.47 -171.87 REMARK 500 2 PHE A 173 -34.18 -33.42 REMARK 500 2 SER A 193 -16.62 -49.28 REMARK 500 2 ARG A 199 22.68 -76.15 REMARK 500 2 VAL A 215 28.06 47.88 REMARK 500 2 ILE A 216 -34.86 -146.63 REMARK 500 2 LYS A 217 -163.13 42.11 REMARK 500 2 SER A 225 -159.15 -89.07 REMARK 500 2 SER A 227 179.50 52.54 REMARK 500 2 PHE A 228 99.26 -56.32 REMARK 500 2 VAL A 231 175.45 61.42 REMARK 500 2 GLN A 232 -68.58 68.20 REMARK 500 2 LYS A 233 -81.74 -174.76 REMARK 500 2 SER A 234 38.39 -145.93 REMARK 500 2 LYS A 236 119.28 -176.91 REMARK 500 3 SER A 155 -175.30 -171.68 REMARK 500 3 PRO A 159 -168.06 -72.71 REMARK 500 3 ALA A 178 152.21 -43.05 REMARK 500 3 SER A 193 -16.66 -49.16 REMARK 500 3 ARG A 199 22.14 -78.14 REMARK 500 3 ILE A 216 78.99 44.65 REMARK 500 3 SER A 225 -158.75 -83.48 REMARK 500 3 SER A 227 -43.30 90.78 REMARK 500 3 PHE A 228 71.00 -176.89 REMARK 500 3 VAL A 230 55.99 -119.43 REMARK 500 3 VAL A 231 -169.94 58.83 REMARK 500 3 GLN A 232 -68.88 70.66 REMARK 500 3 LYS A 233 -101.43 -178.44 REMARK 500 3 LYS A 236 126.09 -177.81 REMARK 500 4 ALA A 154 83.52 -161.73 REMARK 500 4 PRO A 159 -178.82 -69.15 REMARK 500 4 PHE A 173 -31.66 -37.58 REMARK 500 4 ARG A 199 22.66 -78.40 REMARK 500 4 ARG A 213 -60.51 -90.46 REMARK 500 4 VAL A 215 68.33 71.61 REMARK 500 4 LYS A 217 18.06 56.45 REMARK 500 4 GLN A 218 83.98 46.59 REMARK 500 4 LYS A 220 149.78 62.56 REMARK 500 4 LYS A 222 71.03 -177.13 REMARK 500 4 SER A 225 -159.63 -81.04 REMARK 500 4 SER A 227 70.99 76.70 REMARK 500 4 PHE A 228 98.26 60.98 REMARK 500 4 VAL A 231 -163.51 55.90 REMARK 500 REMARK 500 THIS ENTRY HAS 162 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2RQP A 153 237 UNP Q5SSJ5 HP1B3_HUMAN 153 237 SEQADV 2RQP GLY A 150 UNP Q5SSJ5 EXPRESSION TAG SEQADV 2RQP PRO A 151 UNP Q5SSJ5 EXPRESSION TAG SEQADV 2RQP GLY A 152 UNP Q5SSJ5 EXPRESSION TAG SEQRES 1 A 88 GLY PRO GLY MET ALA SER SER PRO ARG PRO LYS MET ASP SEQRES 2 A 88 ALA ILE LEU THR GLU ALA ILE LYS ALA CYS PHE GLN LYS SEQRES 3 A 88 SER GLY ALA SER VAL VAL ALA ILE ARG LYS TYR ILE ILE SEQRES 4 A 88 HIS LYS TYR PRO SER LEU GLU LEU GLU ARG ARG GLY TYR SEQRES 5 A 88 LEU LEU LYS GLN ALA LEU LYS ARG GLU LEU ASN ARG GLY SEQRES 6 A 88 VAL ILE LYS GLN VAL LYS GLY LYS GLY ALA SER GLY SER SEQRES 7 A 88 PHE VAL VAL VAL GLN LYS SER ARG LYS THR HELIX 1 1 LYS A 160 SER A 176 1 17 HELIX 2 2 SER A 179 TYR A 191 1 13 HELIX 3 3 SER A 193 ARG A 198 1 6 HELIX 4 4 LEU A 202 VAL A 215 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000