PDB Short entry for 2RQR
HEADER    PROTEIN BINDING                         21-OCT-09   2RQR              
TITLE     THE SOLUTION STRUCTURE OF HUMAN DOCK2 SH3 DOMAIN - ELMO1 PEPTIDE      
TITLE    2 CHIMERA COMPLEX                                                      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ENGULFMENT AND CELL MOTILITY PROTEIN 1,DEDICATOR OF        
COMPND   3 CYTOKINESIS PROTEIN 2;                                               
COMPND   4 CHAIN: A;                                                            
COMPND   5 SYNONYM: PROTEIN CED-12 HOMOLOG;                                     
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: ELMO1, KIAA0281, DOCK2, KIAA0209;                              
SOURCE   6 EXPRESSION_SYSTEM: CELL-FREE SYNTHESIS;                              
SOURCE   7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: P070313-06                                
KEYWDS    KIAA0209, KIAA0281, APOPTOSIS, MEMBRANE, PHAGOCYTOSIS,                
KEYWDS   2 PHOSPHOPROTEIN, SH3-BINDING, CYTOSKELETON, GUANINE-NUCLEOTIDE        
KEYWDS   3 RELEASING FACTOR, SH3 DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL  
KEYWDS   4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN         
KEYWDS   5 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING     
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    S.YOKOYAMA,N.TOCHIO,S.KOSHIBA,T.KIGAWA,RIKEN STRUCTURAL               
AUTHOR   2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)                                
REVDAT   3   22-JAN-20 2RQR    1       COMPND SOURCE SEQADV                     
REVDAT   2   04-SEP-19 2RQR    1       JRNL   REMARK                            
REVDAT   1   27-OCT-10 2RQR    0                                                
JRNL        AUTH   K.HANAWA-SUETSUGU,M.KUKIMOTO-NIINO,C.MISHIMA-TSUMAGARI,      
JRNL        AUTH 2 R.AKASAKA,N.OHSAWA,S.SEKINE,T.ITO,N.TOCHIO,S.KOSHIBA,        
JRNL        AUTH 3 T.KIGAWA,T.TERADA,M.SHIROUZU,A.NISHIKIMI,T.URUNO,T.KATAKAI,  
JRNL        AUTH 4 T.KINASHI,D.KOHDA,Y.FUKUI,S.YOKOYAMA                         
JRNL        TITL   STRUCTURAL BASIS FOR MUTUAL RELIEF OF THE RAC GUANINE        
JRNL        TITL 2 NUCLEOTIDE EXCHANGE FACTOR DOCK2 AND ITS PARTNER ELMO1 FROM  
JRNL        TITL 3 THEIR AUTOINHIBITED FORMS.                                   
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 109  3305 2012              
JRNL        REFN                   ESSN 1091-6490                               
JRNL        PMID   22331897                                                     
JRNL        DOI    10.1073/PNAS.1113512109                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR, CYANA                                       
REMARK   3   AUTHORS     : BRUKER BIOSPIN (XWINNMR), GUNTERT, MUMENTHALER,      
REMARK   3                 WUTHRICH (CYANA)                                     
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2RQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000150173.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 296                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1MM [U-100% 13C; U-100% 15N]       
REMARK 210                                   PROTEIN, 20MM [U-2H] TRIS-2,       
REMARK 210                                   100MM SODIUM CHLORIDE-3, 0.02%     
REMARK 210                                   SODIUM AZIDE-4, 1MM [U-2H] DTT-5,  
REMARK 210                                   90% H2O/10% D2O                    
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D 1H-15N NOESY; 3D 1H-13C NOESY   
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE, NMRVIEW, KUJIRA, CYANA    
REMARK 210   METHOD USED                   : DISTANCE GEOMETRY                  
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION                    
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ASN A  14      116.06   -165.61                                   
REMARK 500  1 ILE A  24      138.66    -34.42                                   
REMARK 500  1 SER A  29      173.90    -57.24                                   
REMARK 500  1 ASN A  30      106.01    -42.39                                   
REMARK 500  1 TYR A  31      151.07    -43.39                                   
REMARK 500  1 ASP A  57       49.20    -85.68                                   
REMARK 500  1 ALA A  73      153.78    -40.29                                   
REMARK 500  2 SER A   2      104.33    -37.15                                   
REMARK 500  2 ARG A   8      144.84   -173.80                                   
REMARK 500  2 LEU A  12       38.30    -87.64                                   
REMARK 500  2 ASN A  14      105.29   -165.10                                   
REMARK 500  2 PRO A  25     -173.22    -69.82                                   
REMARK 500  2 ASN A  30      109.50    -34.95                                   
REMARK 500  2 ASP A  32       97.59    -54.17                                   
REMARK 500  2 SER A  48       42.92     36.75                                   
REMARK 500  2 ASP A  57       42.26   -106.66                                   
REMARK 500  2 ALA A  73      151.26    -38.69                                   
REMARK 500  2 ASP A  92       43.45    -88.94                                   
REMARK 500  2 HIS A 101      107.57   -162.87                                   
REMARK 500  3 ASP A  11      109.03   -166.73                                   
REMARK 500  3 GLU A  13      146.99    -36.21                                   
REMARK 500  3 GLN A  16       37.09    -90.50                                   
REMARK 500  3 PRO A  25     -174.29    -69.78                                   
REMARK 500  3 TYR A  31      150.66    -44.98                                   
REMARK 500  3 PHE A  33       35.61    -84.91                                   
REMARK 500  3 PRO A  36        0.22    -69.70                                   
REMARK 500  3 ALA A  73      152.94    -35.60                                   
REMARK 500  3 ASP A  92       41.52    -93.08                                   
REMARK 500  3 VAL A 118      -58.22   -120.49                                   
REMARK 500  4 ASP A  11      112.62   -175.09                                   
REMARK 500  4 GLN A  16       44.89    -89.18                                   
REMARK 500  4 PRO A  18     -172.68    -69.81                                   
REMARK 500  4 SER A  29       48.31    -82.94                                   
REMARK 500  4 ASN A  30      108.91   -174.99                                   
REMARK 500  4 SER A  34       53.20     35.05                                   
REMARK 500  4 ALA A  73      152.01    -40.13                                   
REMARK 500  4 GLU A 117       48.46   -100.03                                   
REMARK 500  5 SER A   2      -61.64   -123.55                                   
REMARK 500  5 SER A   6      119.70    -37.95                                   
REMARK 500  5 ARG A   8       41.81    -82.46                                   
REMARK 500  5 ASP A  11      112.58   -175.20                                   
REMARK 500  5 LEU A  12       42.81    -87.28                                   
REMARK 500  5 ILE A  24      138.68    -39.82                                   
REMARK 500  5 GLU A  27      139.47    -36.91                                   
REMARK 500  5 TYR A  31      138.01    -36.47                                   
REMARK 500  5 ILE A  40      130.52    -34.79                                   
REMARK 500  5 SER A  46      -62.03   -124.32                                   
REMARK 500  5 SER A  51       42.32    -87.11                                   
REMARK 500  5 ASP A  57      117.07   -172.90                                   
REMARK 500  5 ALA A  73      153.58    -37.81                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     240 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  2RQR A    8    33  UNP    Q92556   ELMO1_HUMAN    697    722             
DBREF  2RQR A   57   119  UNP    Q92608   DOCK2_HUMAN      8     70             
SEQADV 2RQR GLY A    1  UNP  Q92556              EXPRESSION TAG                 
SEQADV 2RQR SER A    2  UNP  Q92556              EXPRESSION TAG                 
SEQADV 2RQR SER A    3  UNP  Q92556              EXPRESSION TAG                 
SEQADV 2RQR GLY A    4  UNP  Q92556              EXPRESSION TAG                 
SEQADV 2RQR SER A    5  UNP  Q92556              EXPRESSION TAG                 
SEQADV 2RQR SER A    6  UNP  Q92556              EXPRESSION TAG                 
SEQADV 2RQR GLY A    7  UNP  Q92556              EXPRESSION TAG                 
SEQADV 2RQR SER A   34  UNP  Q92556              LINKER                         
SEQADV 2RQR GLY A   35  UNP  Q92556              LINKER                         
SEQADV 2RQR PRO A   36  UNP  Q92556              LINKER                         
SEQADV 2RQR SER A   37  UNP  Q92556              LINKER                         
SEQADV 2RQR SER A   38  UNP  Q92556              LINKER                         
SEQADV 2RQR GLY A   39  UNP  Q92556              LINKER                         
SEQADV 2RQR ILE A   40  UNP  Q92556              LINKER                         
SEQADV 2RQR GLU A   41  UNP  Q92556              LINKER                         
SEQADV 2RQR GLY A   42  UNP  Q92556              LINKER                         
SEQADV 2RQR ARG A   43  UNP  Q92556              LINKER                         
SEQADV 2RQR GLY A   44  UNP  Q92556              LINKER                         
SEQADV 2RQR SER A   45  UNP  Q92556              LINKER                         
SEQADV 2RQR SER A   46  UNP  Q92556              LINKER                         
SEQADV 2RQR GLY A   47  UNP  Q92556              LINKER                         
SEQADV 2RQR SER A   48  UNP  Q92556              LINKER                         
SEQADV 2RQR SER A   49  UNP  Q92556              LINKER                         
SEQADV 2RQR GLY A   50  UNP  Q92556              LINKER                         
SEQADV 2RQR SER A   51  UNP  Q92556              LINKER                         
SEQADV 2RQR SER A   52  UNP  Q92556              LINKER                         
SEQADV 2RQR GLY A   53  UNP  Q92556              LINKER                         
SEQADV 2RQR SER A   54  UNP  Q92556              LINKER                         
SEQADV 2RQR SER A   55  UNP  Q92556              LINKER                         
SEQADV 2RQR GLY A   56  UNP  Q92556              LINKER                         
SEQRES   1 A  119  GLY SER SER GLY SER SER GLY ARG LEU LEU ASP LEU GLU          
SEQRES   2 A  119  ASN ILE GLN ILE PRO ASP ALA PRO PRO PRO ILE PRO LYS          
SEQRES   3 A  119  GLU PRO SER ASN TYR ASP PHE SER GLY PRO SER SER GLY          
SEQRES   4 A  119  ILE GLU GLY ARG GLY SER SER GLY SER SER GLY SER SER          
SEQRES   5 A  119  GLY SER SER GLY ASP LYS GLU ARG HIS GLY VAL ALA ILE          
SEQRES   6 A  119  TYR ASN PHE GLN GLY SER GLY ALA PRO GLN LEU SER LEU          
SEQRES   7 A  119  GLN ILE GLY ASP VAL VAL ARG ILE GLN GLU THR CYS GLY          
SEQRES   8 A  119  ASP TRP TYR ARG GLY TYR LEU ILE LYS HIS LYS MET LEU          
SEQRES   9 A  119  GLN GLY ILE PHE PRO LYS SER PHE ILE HIS ILE LYS GLU          
SEQRES  10 A  119  VAL THR                                                      
HELIX    1   1 SER A  111  ILE A  113  5                                   3    
SHEET    1   A 4 ARG A  60  VAL A  63  0                                        
SHEET    2   A 4 VAL A  83  CYS A  90 -1  O  ILE A  86   N  ARG A  60           
SHEET    3   A 4 TRP A  93  LEU A  98 -1  O  TRP A  93   N  CYS A  90           
SHEET    4   A 4 GLN A 105  PRO A 109 -1  O  PHE A 108   N  TYR A  94           
CISPEP   1 ALA A   73    PRO A   74          1         0.01                     
CISPEP   2 ALA A   73    PRO A   74          2        -0.02                     
CISPEP   3 ALA A   73    PRO A   74          3         0.02                     
CISPEP   4 ALA A   73    PRO A   74          4        -0.04                     
CISPEP   5 ALA A   73    PRO A   74          5        -0.01                     
CISPEP   6 ALA A   73    PRO A   74          6         0.08                     
CISPEP   7 ALA A   73    PRO A   74          7        -0.01                     
CISPEP   8 ALA A   73    PRO A   74          8         0.01                     
CISPEP   9 ALA A   73    PRO A   74          9         0.00                     
CISPEP  10 ALA A   73    PRO A   74         10        -0.04                     
CISPEP  11 ALA A   73    PRO A   74         11         0.03                     
CISPEP  12 ALA A   73    PRO A   74         12         0.01                     
CISPEP  13 ALA A   73    PRO A   74         13         0.02                     
CISPEP  14 ALA A   73    PRO A   74         14         0.10                     
CISPEP  15 ALA A   73    PRO A   74         15        -0.03                     
CISPEP  16 ALA A   73    PRO A   74         16         0.03                     
CISPEP  17 ALA A   73    PRO A   74         17        -0.01                     
CISPEP  18 ALA A   73    PRO A   74         18         0.07                     
CISPEP  19 ALA A   73    PRO A   74         19        -0.04                     
CISPEP  20 ALA A   73    PRO A   74         20         0.08                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000