PDB Short entry for 2RT5 HEADER TRANSCRIPTION REGULATOR 22-APR-13 2RT5 TITLE STRUCTURAL INSIGHTS INTO THE RECRUITMENT OF SMRT BY THE CO-REPRESSOR TITLE 2 SHARP UNDER PHOSPHORYLATIVE REGULATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MSX2-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SPOC DOMAIN, RESIDUES 3496-3664; COMPND 5 SYNONYM: SMART/HDAC1-ASSOCIATED REPRESSOR PROTEIN, SPEN HOMOLOG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEPTIDE FROM SILENCING MEDIATOR OF RETINOIC ACID AND COMPND 9 THYROID HORMONE RECEPTOR; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHARP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX6P-3; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS SHARP, SPOC DOMAIN, SMRT, PHOSPHORYLATION, TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.MIKAMI,T.KANABA,M.MISHIMA REVDAT 2 24-AUG-22 2RT5 1 JRNL REMARK LINK REVDAT 1 04-DEC-13 2RT5 0 JRNL AUTH S.MIKAMI,T.KANABA,N.TAKIZAWA,A.KOBAYASHI,R.MAESAKI, JRNL AUTH 2 T.FUJIWARA,Y.ITO,M.MISHIMA JRNL TITL STRUCTURAL INSIGHTS INTO THE RECRUITMENT OF SMRT BY THE JRNL TITL 2 COREPRESSOR SHARP UNDER PHOSPHORYLATIVE REGULATION. JRNL REF STRUCTURE V. 22 35 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24268649 JRNL DOI 10.1016/J.STR.2013.10.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000150252. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HN(CA)CO; 3D REMARK 210 HNCO; 3D CBCA(CO)NH; 3D HNCACB; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 4D REMARK 210 HC(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY-HSQC; 3D 1H-13C NOESY- REMARK 210 HSQC; 2D 1H-13C HSQC; 2D 15N REMARK 210 FILTERED 1H NOESY; 3D HNHB; 3D REMARK 210 HN(CO)HB; 3D 15N EDITED NOESY- REMARK 210 HSQC; 3D 13C EDITED NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD2 TYR A 3573 HG12 VAL A 3660 1.33 REMARK 500 O GLU A 3570 HG1 THR A 3571 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A3516 -96.16 59.83 REMARK 500 1 SER A3541 -47.25 -162.15 REMARK 500 1 THR A3571 -42.11 155.68 REMARK 500 1 PRO A3622 25.67 -74.69 REMARK 500 1 ALA A3623 32.26 -77.08 REMARK 500 1 PRO A3655 81.59 -59.24 REMARK 500 1 GLU B2519 -157.44 53.56 REMARK 500 1 LEU B2521 -127.80 -75.27 REMARK 500 1 SEP B2522 93.86 -166.20 REMARK 500 1 ASP B2523 -108.26 -124.37 REMARK 500 1 SEP B2524 -22.69 -144.43 REMARK 500 2 LYS A3516 -91.25 60.38 REMARK 500 2 SER A3541 -38.37 -161.55 REMARK 500 2 THR A3571 -40.86 151.77 REMARK 500 2 ALA A3623 37.75 -79.41 REMARK 500 2 PRO A3631 42.40 -70.27 REMARK 500 2 ILE A3653 40.19 -104.35 REMARK 500 2 PRO A3655 76.12 -59.53 REMARK 500 2 GLU B2519 -156.65 55.37 REMARK 500 2 LEU B2521 -127.68 -81.90 REMARK 500 2 SEP B2522 117.90 -161.29 REMARK 500 2 ASP B2523 -71.58 -169.14 REMARK 500 2 SEP B2524 -59.09 -152.09 REMARK 500 3 LYS A3516 -95.26 62.49 REMARK 500 3 SER A3541 -45.09 -176.85 REMARK 500 3 THR A3571 -43.52 155.38 REMARK 500 3 ALA A3623 49.48 -82.34 REMARK 500 3 PRO A3631 43.59 -71.21 REMARK 500 3 ALA A3643 79.69 -159.32 REMARK 500 3 ILE A3653 39.07 -96.88 REMARK 500 3 PRO A3655 74.07 -63.89 REMARK 500 3 GLU B2519 -163.34 57.85 REMARK 500 3 LEU B2521 -126.17 -90.35 REMARK 500 3 ASP B2523 -66.77 -165.57 REMARK 500 3 SEP B2524 -33.95 -162.89 REMARK 500 4 LYS A3516 -93.00 62.52 REMARK 500 4 ASN A3517 11.34 -143.36 REMARK 500 4 SER A3541 -42.33 169.64 REMARK 500 4 THR A3571 -42.97 142.24 REMARK 500 4 PRO A3617 108.07 -57.08 REMARK 500 4 ALA A3623 46.95 -83.26 REMARK 500 4 ILE A3653 45.17 -104.59 REMARK 500 4 PRO A3655 84.16 -65.02 REMARK 500 4 GLU B2519 -159.19 57.69 REMARK 500 4 LEU B2521 -121.05 -89.52 REMARK 500 4 SEP B2522 61.45 -160.37 REMARK 500 4 ASP B2523 96.32 -163.13 REMARK 500 5 LYS A3516 -90.75 62.63 REMARK 500 5 ASN A3517 12.97 -148.65 REMARK 500 5 SER A3541 -45.11 -155.86 REMARK 500 REMARK 500 THIS ENTRY HAS 268 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 ARG A3552 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11504 RELATED DB: BMRB DBREF 2RT5 A 3496 3664 UNP Q96T58 MINT_HUMAN 3496 3664 DBREF 2RT5 B 2518 2525 UNP Q9Y618 NCOR2_HUMAN 2518 2525 SEQRES 1 A 169 VAL ASP MET VAL GLN LEU LEU LYS LYS TYR PRO ILE VAL SEQRES 2 A 169 TRP GLN GLY LEU LEU ALA LEU LYS ASN ASP THR ALA ALA SEQRES 3 A 169 VAL GLN LEU HIS PHE VAL SER GLY ASN ASN VAL LEU ALA SEQRES 4 A 169 HIS ARG SER LEU PRO LEU SER GLU GLY GLY PRO PRO LEU SEQRES 5 A 169 ARG ILE ALA GLN ARG MET ARG LEU GLU ALA THR GLN LEU SEQRES 6 A 169 GLU GLY VAL ALA ARG ARG MET THR VAL GLU THR ASP TYR SEQRES 7 A 169 CYS LEU LEU LEU ALA LEU PRO CYS GLY ARG ASP GLN GLU SEQRES 8 A 169 ASP VAL VAL SER GLN THR GLU SER LEU LYS ALA ALA PHE SEQRES 9 A 169 ILE THR TYR LEU GLN ALA LYS GLN ALA ALA GLY ILE ILE SEQRES 10 A 169 ASN VAL PRO ASN PRO GLY SER ASN GLN PRO ALA TYR VAL SEQRES 11 A 169 LEU GLN ILE PHE PRO PRO CYS GLU PHE SER GLU SER HIS SEQRES 12 A 169 LEU SER ARG LEU ALA PRO ASP LEU LEU ALA SER ILE SER SEQRES 13 A 169 ASN ILE SER PRO HIS LEU MET ILE VAL ILE ALA SER VAL SEQRES 1 B 8 TYR GLU THR LEU SEP ASP SEP GLU MODRES 2RT5 SEP B 2522 SER PHOSPHOSERINE MODRES 2RT5 SEP B 2524 SER PHOSPHOSERINE HET SEP B2522 14 HET SEP B2524 14 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 2 SEP 2(C3 H8 N O6 P) HELIX 1 1 ASP A 3497 LEU A 3502 1 6 HELIX 2 2 ASN A 3530 LEU A 3538 1 9 HELIX 3 3 GLU A 3556 THR A 3568 1 13 HELIX 4 4 ASP A 3584 PHE A 3599 1 16 HELIX 5 5 PHE A 3599 GLN A 3607 1 9 HELIX 6 6 CYS A 3632 ALA A 3643 1 12 HELIX 7 7 ALA A 3643 SER A 3651 1 9 SHEET 1 A 8 LEU A3547 ARG A3548 0 SHEET 2 A 8 ILE A3507 LEU A3515 1 N ALA A3514 O LEU A3547 SHEET 3 A 8 ASP A3518 GLY A3529 -1 O LEU A3524 N TRP A3509 SHEET 4 A 8 TYR A3573 PRO A3580 -1 O LEU A3575 N SER A3528 SHEET 5 A 8 LEU A3657 SER A3663 -1 O ILE A3661 N CYS A3574 SHEET 6 A 8 TYR A3624 PHE A3629 -1 N GLN A3627 O VAL A3660 SHEET 7 A 8 GLY A3610 VAL A3614 -1 N GLY A3610 O ILE A3628 SHEET 8 A 8 GLN A3551 ARG A3552 -1 N GLN A3551 O ILE A3611 LINK C LEU B2521 N SEP B2522 1555 1555 1.32 LINK C SEP B2522 N ASP B2523 1555 1555 1.32 LINK C ASP B2523 N SEP B2524 1555 1555 1.32 LINK C SEP B2524 N GLU B2525 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000