PDB Short entry for 2RVE HEADER HYDROLASE/DNA 19-MAR-91 2RVE TITLE THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS COMPLEXES WITH TITLE 2 COGNATE AND NON-COGNATE DNA SEGMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*GP*CP*TP*CP*G)-3'); COMPND 3 CHAIN: C, D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN (ECO RV (E.C.3.1.21.4)); COMPND 7 CHAIN: A, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 5 ORGANISM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.K.WINKLER,D.W.BANNER,C.OEFNER,D.TSERNOGLOU,R.S.BROWN,S.P.HEATHMAN, AUTHOR 2 R.K.BRYAN,P.D.MARTIN,K.PETRATOS,K.S.WILSON REVDAT 4 21-FEB-24 2RVE 1 REMARK REVDAT 3 24-FEB-09 2RVE 1 VERSN REVDAT 2 01-APR-03 2RVE 1 JRNL REVDAT 1 15-JAN-92 2RVE 0 JRNL AUTH F.K.WINKLER,D.W.BANNER,C.OEFNER,D.TSERNOGLOU,R.S.BROWN, JRNL AUTH 2 S.P.HEATHMAN,R.K.BRYAN,P.D.MARTIN,K.PETRATOS,K.S.WILSON JRNL TITL THE CRYSTAL STRUCTURE OF ECORV ENDONUCLEASE AND OF ITS JRNL TITL 2 COMPLEXES WITH COGNATE AND NON-COGNATE DNA FRAGMENTS. JRNL REF EMBO J. V. 12 1781 1993 JRNL REFN ISSN 0261-4189 JRNL PMID 8491171 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.K.WINKLER,A.D'ARCY,H.BLOECKER,R.FRANK,J.H.VAN BOOM REMARK 1 TITL CRYSTALLIZATION OF COMPLEXES OF ECORV ENDONUCLEASE WITH REMARK 1 TITL 2 COGNATE AND NON-COGNATE DNA FRAGMENTS REMARK 1 REF J.MOL.BIOL. V. 217 235 1991 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11127 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3528 REMARK 3 NUCLEIC ACID ATOMS : 644 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.014 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 1.740 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE FOLLOWING PROTEIN SIDE CHAINS HAVE NO OR POORLY DEFINED REMARK 3 DENSITY BUT HAVE NOT BEEN EXCLUDED FROM THIS ENTRY: REMARK 3 A CHAIN: ASP 19, SER 35, LYS 67, LYS 85, LYS 98, REMARK 3 LYS 197, LYS 203, ASN 231 REMARK 3 B CHAIN: GLU 27, LYS 85, LYS 164 REMARK 4 REMARK 4 2RVE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-21 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET X100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12143 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.80000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 13 REMARK 465 GLU A 14 REMARK 465 ASN A 15 REMARK 465 GLN A 16 REMARK 465 LYS A 17 REMARK 465 VAL A 141 REMARK 465 ALA A 142 REMARK 465 THR A 143 REMARK 465 ARG A 144 REMARK 465 LYS A 145 REMARK 465 SER A 146 REMARK 465 SER A 147 REMARK 465 LEU A 148 REMARK 465 LYS A 149 REMARK 465 GLY A 184 REMARK 465 ASN A 185 REMARK 465 THR A 186 REMARK 465 ARG A 221 REMARK 465 THR A 222 REMARK 465 SER A 223 REMARK 465 GLN A 224 REMARK 465 LEU A 225 REMARK 465 ARG A 226 REMARK 465 ASN A 227 REMARK 465 ASP A 228 REMARK 465 LYS A 229 REMARK 465 TYR A 241 REMARK 465 ARG A 242 REMARK 465 GLY A 243 REMARK 465 ARG A 244 REMARK 465 LYS A 245 REMARK 465 ASP B 13 REMARK 465 GLU B 14 REMARK 465 ASN B 15 REMARK 465 GLN B 16 REMARK 465 LYS B 17 REMARK 465 TYR B 18 REMARK 465 ASP B 19 REMARK 465 VAL B 141 REMARK 465 ALA B 142 REMARK 465 THR B 143 REMARK 465 ARG B 144 REMARK 465 LYS B 145 REMARK 465 SER B 146 REMARK 465 SER B 147 REMARK 465 LEU B 148 REMARK 465 LYS B 149 REMARK 465 GLY B 184 REMARK 465 ASN B 185 REMARK 465 THR B 186 REMARK 465 ARG B 221 REMARK 465 THR B 222 REMARK 465 SER B 223 REMARK 465 GLN B 224 REMARK 465 LEU B 225 REMARK 465 ARG B 226 REMARK 465 ASN B 227 REMARK 465 ASP B 228 REMARK 465 LYS B 229 REMARK 465 ARG B 242 REMARK 465 GLY B 243 REMARK 465 ARG B 244 REMARK 465 LYS B 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 1 O3' DC C 1 C3' -0.038 REMARK 500 DC C 1 N1 DC C 1 C6 -0.042 REMARK 500 DA C 3 O3' DA C 3 C3' -0.056 REMARK 500 DC E 1 O3' DC E 1 C3' -0.057 REMARK 500 DC E 1 N1 DC E 1 C6 -0.040 REMARK 500 DG E 2 O3' DG E 2 C3' -0.038 REMARK 500 DC F 1 O3' DC F 1 C3' -0.037 REMARK 500 DA F 3 N3 DA F 3 C4 -0.037 REMARK 500 DC F 5 O3' DC F 5 C3' -0.052 REMARK 500 GLU A 27 CD GLU A 27 OE2 0.069 REMARK 500 GLU A 45 CD GLU A 45 OE2 0.072 REMARK 500 GLU A 57 CD GLU A 57 OE2 0.079 REMARK 500 GLU A 82 CD GLU A 82 OE2 0.067 REMARK 500 GLU A 99 CD GLU A 99 OE2 0.068 REMARK 500 GLU A 158 CD GLU A 158 OE2 0.080 REMARK 500 GLU A 201 CD GLU A 201 OE2 0.070 REMARK 500 GLU B 27 CD GLU B 27 OE2 0.077 REMARK 500 GLU B 45 CD GLU B 45 OE2 0.066 REMARK 500 GLU B 57 CD GLU B 57 OE2 0.071 REMARK 500 GLU B 64 CD GLU B 64 OE2 0.075 REMARK 500 GLU B 65 CD GLU B 65 OE2 0.071 REMARK 500 GLU B 101 CD GLU B 101 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 1 C6 - N1 - C1' ANGL. DEV. = 9.1 DEGREES REMARK 500 DC C 1 C2 - N1 - C1' ANGL. DEV. = -10.7 DEGREES REMARK 500 DG C 2 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC D 1 C2 - N1 - C1' ANGL. DEV. = -7.5 DEGREES REMARK 500 DG D 4 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DC D 7 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC E 1 C6 - N1 - C1' ANGL. DEV. = 17.5 DEGREES REMARK 500 DC E 1 C2 - N1 - C1' ANGL. DEV. = -19.2 DEGREES REMARK 500 DG E 2 C8 - N9 - C1' ANGL. DEV. = 12.6 DEGREES REMARK 500 DG E 2 C4 - N9 - C1' ANGL. DEV. = -12.7 DEGREES REMARK 500 DC E 7 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC F 1 C6 - N1 - C1' ANGL. DEV. = 13.3 DEGREES REMARK 500 DC F 1 C2 - N1 - C1' ANGL. DEV. = -14.1 DEGREES REMARK 500 DG F 2 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG F 4 P - O5' - C5' ANGL. DEV. = -10.9 DEGREES REMARK 500 DC F 5 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT F 6 C6 - N1 - C1' ANGL. DEV. = 10.8 DEGREES REMARK 500 DT F 6 C2 - N1 - C1' ANGL. DEV. = -11.2 DEGREES REMARK 500 ASP A 6 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 126 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 140 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 172 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 172 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP A 179 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 198 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP A 207 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 207 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 214 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ASP B 36 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ASP B 74 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP B 172 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP B 198 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 198 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP B 207 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B 210 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP B 214 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 214 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 -35.02 -39.29 REMARK 500 LEU A 33 -159.60 -90.23 REMARK 500 PHE A 44 -9.39 -59.30 REMARK 500 HIS A 59 17.66 -148.41 REMARK 500 ASN A 70 33.77 76.16 REMARK 500 PRO A 80 -38.59 -31.26 REMARK 500 LYS A 98 -162.94 -112.81 REMARK 500 LYS A 104 134.68 -171.87 REMARK 500 SER A 112 -126.42 -73.86 REMARK 500 ASN A 117 -28.72 69.43 REMARK 500 PHE A 125 -36.18 -31.33 REMARK 500 GLU A 155 4.26 -68.46 REMARK 500 TYR A 163 154.84 175.02 REMARK 500 HIS A 193 70.56 -113.26 REMARK 500 ALA A 194 -167.82 -117.56 REMARK 500 SER A 208 171.22 177.21 REMARK 500 TRP A 239 3.38 -55.34 REMARK 500 ASN B 70 45.96 74.17 REMARK 500 TYR B 78 139.41 -179.90 REMARK 500 GLU B 82 66.47 -106.09 REMARK 500 LYS B 85 63.09 -118.72 REMARK 500 ASN B 100 11.84 80.63 REMARK 500 LYS B 102 98.92 -68.66 REMARK 500 LEU B 107 54.41 -115.90 REMARK 500 SER B 112 -119.71 -88.81 REMARK 500 ASN B 117 -33.10 99.19 REMARK 500 ASP B 126 12.43 -68.28 REMARK 500 GLU B 155 43.19 -109.74 REMARK 500 ALA B 181 177.06 -57.16 REMARK 500 ALA B 194 -168.29 -122.68 REMARK 500 ASN B 231 33.05 -149.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 2RVE A 2 245 UNP P04390 T2E5_ECOLI 1 244 DBREF 2RVE B 2 245 UNP P04390 T2E5_ECOLI 1 244 DBREF 2RVE C 1 8 PDB 2RVE 2RVE 1 8 DBREF 2RVE D 1 8 PDB 2RVE 2RVE 1 8 DBREF 2RVE E 1 8 PDB 2RVE 2RVE 1 8 DBREF 2RVE F 1 8 PDB 2RVE 2RVE 1 8 SEQRES 1 C 8 DC DG DA DG DC DT DC DG SEQRES 1 D 8 DC DG DA DG DC DT DC DG SEQRES 1 E 8 DC DG DA DG DC DT DC DG SEQRES 1 F 8 DC DG DA DG DC DT DC DG SEQRES 1 A 244 SER LEU ARG SER ASP LEU ILE ASN ALA LEU TYR ASP GLU SEQRES 2 A 244 ASN GLN LYS TYR ASP VAL CYS GLY ILE ILE SER ALA GLU SEQRES 3 A 244 GLY LYS ILE TYR PRO LEU GLY SER ASP THR LYS VAL LEU SEQRES 4 A 244 SER THR ILE PHE GLU LEU PHE SER ARG PRO ILE ILE ASN SEQRES 5 A 244 LYS ILE ALA GLU LYS HIS GLY TYR ILE VAL GLU GLU PRO SEQRES 6 A 244 LYS GLN GLN ASN HIS TYR PRO ASP PHE THR LEU TYR LYS SEQRES 7 A 244 PRO SER GLU PRO ASN LYS LYS ILE ALA ILE ASP ILE LYS SEQRES 8 A 244 THR THR TYR THR ASN LYS GLU ASN GLU LYS ILE LYS PHE SEQRES 9 A 244 THR LEU GLY GLY TYR THR SER PHE ILE ARG ASN ASN THR SEQRES 10 A 244 LYS ASN ILE VAL TYR PRO PHE ASP GLN TYR ILE ALA HIS SEQRES 11 A 244 TRP ILE ILE GLY TYR VAL TYR THR ARG VAL ALA THR ARG SEQRES 12 A 244 LYS SER SER LEU LYS THR TYR ASN ILE ASN GLU LEU ASN SEQRES 13 A 244 GLU ILE PRO LYS PRO TYR LYS GLY VAL LYS VAL PHE LEU SEQRES 14 A 244 GLN ASP LYS TRP VAL ILE ALA GLY ASP LEU ALA GLY SER SEQRES 15 A 244 GLY ASN THR THR ASN ILE GLY SER ILE HIS ALA HIS TYR SEQRES 16 A 244 LYS ASP PHE VAL GLU GLY LYS GLY ILE PHE ASP SER GLU SEQRES 17 A 244 ASP GLU PHE LEU ASP TYR TRP ARG ASN TYR GLU ARG THR SEQRES 18 A 244 SER GLN LEU ARG ASN ASP LYS TYR ASN ASN ILE SER GLU SEQRES 19 A 244 TYR ARG ASN TRP ILE TYR ARG GLY ARG LYS SEQRES 1 B 244 SER LEU ARG SER ASP LEU ILE ASN ALA LEU TYR ASP GLU SEQRES 2 B 244 ASN GLN LYS TYR ASP VAL CYS GLY ILE ILE SER ALA GLU SEQRES 3 B 244 GLY LYS ILE TYR PRO LEU GLY SER ASP THR LYS VAL LEU SEQRES 4 B 244 SER THR ILE PHE GLU LEU PHE SER ARG PRO ILE ILE ASN SEQRES 5 B 244 LYS ILE ALA GLU LYS HIS GLY TYR ILE VAL GLU GLU PRO SEQRES 6 B 244 LYS GLN GLN ASN HIS TYR PRO ASP PHE THR LEU TYR LYS SEQRES 7 B 244 PRO SER GLU PRO ASN LYS LYS ILE ALA ILE ASP ILE LYS SEQRES 8 B 244 THR THR TYR THR ASN LYS GLU ASN GLU LYS ILE LYS PHE SEQRES 9 B 244 THR LEU GLY GLY TYR THR SER PHE ILE ARG ASN ASN THR SEQRES 10 B 244 LYS ASN ILE VAL TYR PRO PHE ASP GLN TYR ILE ALA HIS SEQRES 11 B 244 TRP ILE ILE GLY TYR VAL TYR THR ARG VAL ALA THR ARG SEQRES 12 B 244 LYS SER SER LEU LYS THR TYR ASN ILE ASN GLU LEU ASN SEQRES 13 B 244 GLU ILE PRO LYS PRO TYR LYS GLY VAL LYS VAL PHE LEU SEQRES 14 B 244 GLN ASP LYS TRP VAL ILE ALA GLY ASP LEU ALA GLY SER SEQRES 15 B 244 GLY ASN THR THR ASN ILE GLY SER ILE HIS ALA HIS TYR SEQRES 16 B 244 LYS ASP PHE VAL GLU GLY LYS GLY ILE PHE ASP SER GLU SEQRES 17 B 244 ASP GLU PHE LEU ASP TYR TRP ARG ASN TYR GLU ARG THR SEQRES 18 B 244 SER GLN LEU ARG ASN ASP LYS TYR ASN ASN ILE SER GLU SEQRES 19 B 244 TYR ARG ASN TRP ILE TYR ARG GLY ARG LYS FORMUL 7 HOH *68(H2 O) HELIX 1 1 SER A 2 TYR A 12 1 11 HELIX 2 2 LYS A 38 PHE A 47 1 10 HELIX 3 3 PHE A 47 LYS A 58 1 12 HELIX 4 4 SER A 112 ASN A 117 1 6 HELIX 5 5 PRO A 124 ASP A 126 5 3 HELIX 6 6 ASN A 154 ILE A 159 5 6 HELIX 7 7 LYS A 173 ILE A 176 1 4 HELIX 8 8 HIS A 195 GLY A 202 1 8 HELIX 9 9 SER A 208 ASN A 218 1 11 HELIX 10 10 ASN A 232 TRP A 239 1 8 HELIX 11 11 SER B 2 TYR B 12 1 11 HELIX 12 12 ASP B 36 HIS B 59 1 24 HELIX 13 13 PRO B 124 ASP B 126 5 3 HELIX 14 14 ASN B 154 ILE B 159 5 6 HELIX 15 15 LYS B 173 ALA B 177 1 5 HELIX 16 16 HIS B 195 GLY B 202 1 8 HELIX 17 17 SER B 208 TYR B 219 1 12 HELIX 18 18 ASN B 232 ILE B 240 1 9 SHEET 1 A 5 ILE A 30 PRO A 32 0 SHEET 2 A 5 VAL A 20 ILE A 24 -1 O ILE A 23 N TYR A 31 SHEET 3 A 5 ILE B 23 SER B 25 -1 O ILE B 24 N CYS A 21 SHEET 4 A 5 LYS B 29 TYR B 31 -1 O LYS B 29 N SER B 25 SHEET 5 A 5 TYR B 151 ASN B 152 -1 N TYR B 151 O ILE B 30 SHEET 1 B 5 ILE A 62 GLU A 64 0 SHEET 2 B 5 PHE A 75 LYS A 79 -1 O THR A 76 N GLU A 64 SHEET 3 B 5 GLU A 82 THR A 96 -1 N GLU A 82 O LYS A 79 SHEET 4 B 5 TYR A 128 THR A 139 1 N ILE A 129 O LYS A 86 SHEET 5 B 5 LYS A 164 ASP A 172 -1 N LYS A 164 O THR A 139 SHEET 1 C 3 THR A 106 GLY A 109 0 SHEET 2 C 3 ASN A 188 SER A 191 -1 N ILE A 189 O GLY A 108 SHEET 3 C 3 ALA A 177 ALA A 181 -1 N GLY A 178 O GLY A 190 SHEET 1 D 5 ILE B 62 GLU B 64 0 SHEET 2 D 5 PHE B 75 TYR B 78 -1 O THR B 76 N GLU B 64 SHEET 3 D 5 LYS B 86 THR B 96 -1 O ILE B 87 N LEU B 77 SHEET 4 D 5 TYR B 128 THR B 139 1 N ILE B 129 O LYS B 86 SHEET 5 D 5 LYS B 167 ASP B 172 -1 N LYS B 167 O VAL B 137 SHEET 1 E 2 THR B 106 GLY B 109 0 SHEET 2 E 2 ASN B 188 GLY B 190 -1 O ILE B 189 N LEU B 107 CISPEP 1 TYR A 72 PRO A 73 0 -0.28 CISPEP 2 TYR B 72 PRO B 73 0 2.61 CRYST1 68.500 79.600 66.400 90.00 104.60 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014599 0.000000 0.003803 0.00000 SCALE2 0.000000 0.012563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015563 0.00000