PDB Short entry for 2SRT HEADER HYDROLASE/HYDROLASE INHIBITOR 22-MAR-95 2SRT TITLE CATALYTIC DOMAIN OF HUMAN STROMELYSIN-1 AT PH 5.5 AND 40OC COMPLEXED TITLE 2 WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMELYSIN-1; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.24.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 GENE: HUMAN STROMELYSIN-1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRO-SFSTR; SOURCE 10 EXPRESSION_SYSTEM_GENE: HUMAN STROMELYSIN-1 KEYWDS METZINCIN, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR P.R.GOOLEY,J.F.O'CONNELL REVDAT 5 29-SEP-21 2SRT 1 REMARK HET HETNAM FORMUL REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 29-FEB-12 2SRT 1 JRNL VERSN HEADER REVDAT 3 24-FEB-09 2SRT 1 VERSN REVDAT 2 01-APR-03 2SRT 1 JRNL REVDAT 1 10-JUL-95 2SRT 0 SPRSDE 10-JUL-95 2SRT 1SRT JRNL AUTH P.R.GOOLEY,J.F.O'CONNELL,A.I.MARCY,G.C.CUCA,S.P.SALOWE, JRNL AUTH 2 B.L.BUSH,J.D.HERMES,C.K.ESSER,W.K.HAGMANN,J.P.SPRINGER, JRNL AUTH 3 B.A.JOHNSON JRNL TITL THE NMR STRUCTURE OF THE INHIBITED CATALYTIC DOMAIN OF HUMAN JRNL TITL 2 STROMELYSIN-1. JRNL REF NAT.STRUCT.BIOL. V. 1 111 1994 JRNL REFN ISSN 1072-8368 JRNL PMID 7656014 JRNL DOI 10.1038/NSB0294-111 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.R.GOOLEY,B.A.JOHNSON,A.I.MARCY,G.C.CUCA,S.P.SALOWE, REMARK 1 AUTH 2 W.K.HAGMANN,C.K.ESSER,J.P.SPRINGER REMARK 1 TITL SECONDARY STRUCTURE AND ZINC LIGATION OF HUMAN RECOMBINANT REMARK 1 TITL 2 SHORT-FORM STROMELYSIN BY MULTIDIMENSIONAL HETERONUCLEAR NMR REMARK 1 REF BIOCHEMISTRY V. 32 13098 1993 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DIANA, FANTOM REMARK 3 AUTHORS : GUNTERT,BRAUN,WUTHRICH (DIANA), VON REMARK 3 FREYBERG,SCHAUMANN,BRAUN (FANTOM) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2SRT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178651. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 85 -126.30 -116.86 REMARK 500 1 PHE A 86 170.21 178.28 REMARK 500 1 ILE A 89 115.96 67.15 REMARK 500 1 LYS A 91 123.23 176.91 REMARK 500 1 ASP A 107 -48.04 -157.75 REMARK 500 1 ARG A 149 -149.70 41.35 REMARK 500 1 HIS A 151 48.10 -156.66 REMARK 500 1 ASP A 153 -160.10 46.04 REMARK 500 1 TYR A 155 67.59 -155.31 REMARK 500 1 PHE A 157 170.73 -52.39 REMARK 500 1 ASP A 158 103.47 -170.23 REMARK 500 1 ASN A 162 -152.14 51.34 REMARK 500 1 VAL A 163 116.99 -37.08 REMARK 500 1 ASP A 183 49.91 -89.74 REMARK 500 1 ASP A 189 -179.79 -170.32 REMARK 500 1 THR A 191 -43.17 -156.58 REMARK 500 1 ASN A 194 115.04 -33.77 REMARK 500 1 ALA A 213 56.50 -103.49 REMARK 500 1 PRO A 221 48.63 -75.04 REMARK 500 1 PHE A 232 152.00 -44.57 REMARK 500 1 TYR A 246 -94.10 -143.72 REMARK 500 2 THR A 85 -114.09 -119.69 REMARK 500 2 PHE A 86 170.38 175.86 REMARK 500 2 ILE A 89 112.13 66.20 REMARK 500 2 LYS A 91 123.85 172.40 REMARK 500 2 ASP A 107 -48.57 -158.75 REMARK 500 2 ARG A 149 -134.91 35.66 REMARK 500 2 HIS A 151 43.31 -166.41 REMARK 500 2 ASP A 153 -157.46 43.59 REMARK 500 2 TYR A 155 77.50 -155.02 REMARK 500 2 ASP A 158 117.82 164.83 REMARK 500 2 ASN A 162 -162.54 45.72 REMARK 500 2 VAL A 163 112.12 -34.26 REMARK 500 2 LEU A 207 -95.84 -78.25 REMARK 500 2 PHE A 210 -68.04 -152.74 REMARK 500 2 SER A 212 -99.04 -91.36 REMARK 500 2 ALA A 213 -48.61 173.81 REMARK 500 2 TYR A 246 -90.06 -112.26 REMARK 500 2 SER A 252 76.95 -151.63 REMARK 500 3 PHE A 86 170.80 -53.69 REMARK 500 3 ILE A 89 96.63 55.89 REMARK 500 3 LYS A 91 123.41 172.56 REMARK 500 3 ASP A 107 -47.70 -162.63 REMARK 500 3 ARG A 149 -153.74 33.52 REMARK 500 3 ASP A 153 -164.45 178.22 REMARK 500 3 PHE A 154 64.69 -107.29 REMARK 500 3 TYR A 155 64.23 -156.99 REMARK 500 3 PHE A 157 -131.37 -85.22 REMARK 500 3 ASP A 158 104.25 74.89 REMARK 500 3 ASN A 162 -156.36 56.50 REMARK 500 REMARK 500 THIS ENTRY HAS 510 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 134 0.09 SIDE CHAIN REMARK 500 1 ARG A 149 0.10 SIDE CHAIN REMARK 500 2 ARG A 100 0.11 SIDE CHAIN REMARK 500 2 ARG A 134 0.08 SIDE CHAIN REMARK 500 2 ARG A 231 0.12 SIDE CHAIN REMARK 500 3 ARG A 233 0.15 SIDE CHAIN REMARK 500 4 ARG A 93 0.08 SIDE CHAIN REMARK 500 4 ARG A 134 0.09 SIDE CHAIN REMARK 500 4 ARG A 149 0.14 SIDE CHAIN REMARK 500 4 ARG A 233 0.10 SIDE CHAIN REMARK 500 5 ARG A 84 0.08 SIDE CHAIN REMARK 500 5 ARG A 93 0.14 SIDE CHAIN REMARK 500 6 ARG A 93 0.10 SIDE CHAIN REMARK 500 7 ARG A 233 0.11 SIDE CHAIN REMARK 500 8 ARG A 233 0.10 SIDE CHAIN REMARK 500 9 ARG A 134 0.13 SIDE CHAIN REMARK 500 9 ARG A 149 0.19 SIDE CHAIN REMARK 500 10 ARG A 100 0.10 SIDE CHAIN REMARK 500 10 ARG A 231 0.14 SIDE CHAIN REMARK 500 11 ARG A 100 0.09 SIDE CHAIN REMARK 500 11 ARG A 134 0.17 SIDE CHAIN REMARK 500 12 ARG A 93 0.08 SIDE CHAIN REMARK 500 12 ARG A 149 0.13 SIDE CHAIN REMARK 500 13 ARG A 84 0.11 SIDE CHAIN REMARK 500 14 ARG A 84 0.14 SIDE CHAIN REMARK 500 14 ARG A 231 0.09 SIDE CHAIN REMARK 500 15 ARG A 149 0.09 SIDE CHAIN REMARK 500 15 ARG A 231 0.09 SIDE CHAIN REMARK 500 16 ARG A 149 0.17 SIDE CHAIN REMARK 500 17 ARG A 84 0.11 SIDE CHAIN REMARK 500 17 ARG A 134 0.12 SIDE CHAIN REMARK 500 18 ARG A 233 0.09 SIDE CHAIN REMARK 500 19 ARG A 100 0.08 SIDE CHAIN REMARK 500 19 ARG A 149 0.09 SIDE CHAIN REMARK 500 20 ARG A 149 0.17 SIDE CHAIN REMARK 500 21 ARG A 84 0.15 SIDE CHAIN REMARK 500 21 ARG A 134 0.14 SIDE CHAIN REMARK 500 21 ARG A 149 0.10 SIDE CHAIN REMARK 500 21 ARG A 231 0.09 SIDE CHAIN REMARK 500 21 ARG A 233 0.16 SIDE CHAIN REMARK 500 22 ARG A 93 0.09 SIDE CHAIN REMARK 500 22 ARG A 149 0.11 SIDE CHAIN REMARK 500 23 ARG A 93 0.09 SIDE CHAIN REMARK 500 23 ARG A 231 0.11 SIDE CHAIN REMARK 500 24 ARG A 84 0.08 SIDE CHAIN REMARK 500 24 ARG A 93 0.12 SIDE CHAIN REMARK 500 24 ARG A 149 0.16 SIDE CHAIN REMARK 500 25 ARG A 93 0.14 SIDE CHAIN REMARK 500 25 ARG A 149 0.10 SIDE CHAIN REMARK 500 26 ARG A 149 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 57 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 258 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 151 NE2 REMARK 620 2 HIS A 166 NE2 97.2 REMARK 620 3 HIS A 179 ND1 90.1 110.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 257 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 201 NE2 REMARK 620 2 HIS A 205 NE2 108.7 REMARK 620 3 HIS A 211 NE2 106.8 129.4 REMARK 620 4 8MI A 256 O4 109.5 123.1 74.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: S1 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: S2 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: S3 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8MI A 256 DBREF 2SRT A 83 255 UNP P08254 MMP3_HUMAN 100 272 SEQRES 1 A 173 PHE ARG THR PHE PRO GLY ILE PRO LYS TRP ARG LYS THR SEQRES 2 A 173 HIS LEU THR TYR ARG ILE VAL ASN TYR THR PRO ASP LEU SEQRES 3 A 173 PRO LYS ASP ALA VAL ASP SER ALA VAL GLU LYS ALA LEU SEQRES 4 A 173 LYS VAL TRP GLU GLU VAL THR PRO LEU THR PHE SER ARG SEQRES 5 A 173 LEU TYR GLU GLY GLU ALA ASP ILE MET ILE SER PHE ALA SEQRES 6 A 173 VAL ARG GLU HIS GLY ASP PHE TYR PRO PHE ASP GLY PRO SEQRES 7 A 173 GLY ASN VAL LEU ALA HIS ALA TYR ALA PRO GLY PRO GLY SEQRES 8 A 173 ILE ASN GLY ASP ALA HIS PHE ASP ASP ASP GLU GLN TRP SEQRES 9 A 173 THR LYS ASP THR THR GLY THR ASN LEU PHE LEU VAL ALA SEQRES 10 A 173 ALA HIS GLU ILE GLY HIS SER LEU GLY LEU PHE HIS SER SEQRES 11 A 173 ALA ASN THR GLU ALA LEU MET TYR PRO LEU TYR HIS SER SEQRES 12 A 173 LEU THR ASP LEU THR ARG PHE ARG LEU SER GLN ASP ASP SEQRES 13 A 173 ILE ASN GLY ILE GLN SER LEU TYR GLY PRO PRO PRO ASP SEQRES 14 A 173 SER PRO GLU THR HET ZN A 257 1 HET ZN A 258 1 HET 8MI A 256 70 HETNAM ZN ZINC ION HETNAM 8MI N-(R-CARBOXY-ETHYL)-ALPHA-(S)-(2-PHENYLETHYL)GLYCYL-L- HETNAM 2 8MI ARGININE-N-PHENYLAMIDE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 8MI C25 H35 N6 O4 1+ HELIX 1 1 LYS A 110 GLU A 125 1 16 HELIX 2 2 LEU A 195 LEU A 207 1 13 HELIX 3 3 LEU A 229 ARG A 231 5 3 HELIX 4 4 GLN A 236 LEU A 245 1 10 SHEET 1 A 5 THR A 131 ARG A 134 0 SHEET 2 A 5 HIS A 96 ILE A 101 1 N LEU A 97 O THR A 131 SHEET 3 A 5 ILE A 142 PHE A 146 1 N ILE A 142 O ARG A 100 SHEET 4 A 5 ALA A 178 PHE A 180 1 N ALA A 178 O SER A 145 SHEET 5 A 5 ALA A 165 ALA A 167 -1 N HIS A 166 O HIS A 179 LINK NE2 HIS A 151 ZN ZN A 258 1555 1555 2.03 LINK NE2 HIS A 166 ZN ZN A 258 1555 1555 2.22 LINK ND1 HIS A 179 ZN ZN A 258 1555 1555 2.25 LINK NE2 HIS A 201 ZN ZN A 257 1555 1555 2.06 LINK NE2 HIS A 205 ZN ZN A 257 1555 1555 2.23 LINK NE2 HIS A 211 ZN ZN A 257 1555 1555 2.17 LINK O4 8MI A 256 ZN ZN A 257 1555 1555 2.05 SITE 1 S1 8 LEU A 164 LEU A 197 VAL A 198 HIS A 201 SITE 2 S1 8 LEU A 218 TYR A 220 LEU A 222 TYR A 223 SITE 1 S2 1 ASP A 183 SITE 1 S3 3 ASN A 162 LEU A 164 TYR A 223 SITE 1 AC1 4 HIS A 201 HIS A 205 HIS A 211 8MI A 256 SITE 1 AC2 4 HIS A 151 TYR A 155 HIS A 166 HIS A 179 SITE 1 AC3 11 ASN A 162 LEU A 164 ALA A 165 LEU A 197 SITE 2 AC3 11 HIS A 201 HIS A 211 LEU A 218 TYR A 220 SITE 3 AC3 11 LEU A 222 TYR A 223 ZN A 257 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000