PDB Short entry for 2STW HEADER DNA BINDING PROTEIN/DNA 05-AUG-96 2STW TITLE SOLUTION NMR STRUCTURE OF THE HUMAN ETS1/DNA COMPLEX, RESTRAINED TITLE 2 REGULARIZED MEAN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*TP*CP*GP*AP*GP*CP*CP*GP*GP*AP*AP*GP*TP*TP*CP*GP*A)-3'); COMPND 4 CHAIN: B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*TP*CP*GP*AP*AP*CP*TP*TP*CP*CP*GP*GP*CP*TP*CP*GP*A)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ETS1; COMPND 13 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS COMPLEX (DNA-BINDING PROTEIN-DNA), PROTO-ONCOGENE, DNA-BINDING, KEYWDS 2 NUCLEAR PROTEIN, PHOSPHORYLATION, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA SOLUTION NMR AUTHOR G.M.CLORE,M.H.WERNER,A.M.GRONENBORN REVDAT 3 16-MAR-22 2STW 1 REMARK REVDAT 2 24-FEB-09 2STW 1 VERSN REVDAT 1 12-MAR-97 2STW 0 SPRSDE 12-MAR-97 2STW 1STW JRNL AUTH M.H.WERNER,G.M.CLORE,C.L.FISHER,R.J.FISHER,L.TRINH, JRNL AUTH 2 J.SHILOACH,A.M.GRONENBORN JRNL TITL CORRECTION OF THE NMR STRUCTURE OF THE ETS1/DNA COMPLEX. JRNL REF J.BIOMOL.NMR V. 10 317 1997 JRNL REFN ISSN 0925-2738 JRNL PMID 9460239 JRNL DOI 10.1023/A:1018399711996 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE RESTRAINED REGULARIZED MEAN STRUCTURE IS PRESENTED IN REMARK 3 ENTRY 2STW AND 25 STRUCTURES ARE PRESENTED IN ENTRY 2STT. REMARK 3 IN 2STW THE LAST COLUMN REPRESENTS THE RMS OF THE 25 REMARK 3 INDIVIDUAL SIMULATED ANNEALING STRUCTURES ABOUT THE MEAN REMARK 3 COORDINATE POSITIONS. THE LAST COLUMN IN THE INDIVIDUAL SA REMARK 3 STRUCTURES HAS NO MEANING. BEST FITTING TO GENERATE THE REMARK 3 AVERAGE STRUCTURE IS WITH RESPECT TO RESIDUES 24 - 105 OF REMARK 3 THE PROTEIN AND BASE PAIRS 1 - 17 OF THE DNA (RESIDUES 10 - REMARK 3 24 ARE DISORDERED IN SOLUTION). RESIDUE 10 CORRESPONDS TO REMARK 3 RESIDUE 320 OF THE NATURAL SEQUENCE. NOTE THE OCCUPANCY REMARK 3 FIELD HAS NO MEANING. REMARK 4 REMARK 4 2STW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178657. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305.00 REMARK 210 PH : 6.80 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX500; AMX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : REGULARIZED MEAN STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 12 H LEU A 16 1.41 REMARK 500 O THR A 20 H SER A 22 1.43 REMARK 500 O TRP A 28 H LEU A 32 1.48 REMARK 500 O ALA A 13 H ALA A 17 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 25 C5 DT C 25 C7 0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 1 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC B 2 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG B 3 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA B 4 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA B 4 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC B 7 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG B 8 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG B 9 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA B 10 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA B 10 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 DA B 11 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA B 11 N1 - C2 - N3 ANGL. DEV. = -3.2 DEGREES REMARK 500 DG B 12 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT B 13 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DT B 14 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC B 15 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG B 16 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA B 17 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA B 17 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 DT C 18 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 19 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 20 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA C 21 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA C 21 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 DA C 22 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA C 22 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 DC C 23 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT C 24 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT C 25 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC C 26 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 27 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG C 28 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG C 29 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC C 30 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT C 31 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC C 32 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 33 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA C 34 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA C 34 N1 - C2 - N3 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 17 -73.97 -60.66 REMARK 500 SER A 22 49.85 -86.77 REMARK 500 LEU A 27 -77.70 -42.97 REMARK 500 LEU A 35 -70.96 -67.98 REMARK 500 ASP A 37 -131.55 -117.56 REMARK 500 LYS A 38 -146.29 -61.50 REMARK 500 CYS A 40 8.34 83.17 REMARK 500 ILE A 44 -168.61 -166.05 REMARK 500 ASP A 49 -112.81 -129.23 REMARK 500 ASN A 70 18.86 54.78 REMARK 500 ARG A 81 -73.93 -89.41 REMARK 500 TYR A 85 -8.97 -48.75 REMARK 500 TYR A 87 29.65 -76.20 REMARK 500 ILE A 91 -61.14 -138.45 REMARK 500 LYS A 98 -140.42 -110.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 64 0.09 SIDE CHAIN REMARK 500 ARG A 68 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2STT RELATED DB: PDB REMARK 900 ENSEMBLE OF 25 STRUCTURES DBREF 2STW A 10 105 UNP P14921 ETS1_HUMAN 320 415 DBREF 2STW B 1 17 PDB 2STW 2STW 1 17 DBREF 2STW C 18 34 PDB 2STW 2STW 18 34 SEQRES 1 B 17 DT DC DG DA DG DC DC DG DG DA DA DG DT SEQRES 2 B 17 DT DC DG DA SEQRES 1 C 17 DT DC DG DA DA DC DT DT DC DC DG DG DC SEQRES 2 C 17 DT DC DG DA SEQRES 1 A 96 VAL ILE PRO ALA ALA ALA LEU ALA GLY TYR THR GLY SER SEQRES 2 A 96 GLY PRO ILE GLN LEU TRP GLN PHE LEU LEU GLU LEU LEU SEQRES 3 A 96 THR ASP LYS SER CYS GLN SER PHE ILE SER TRP THR GLY SEQRES 4 A 96 ASP GLY TRP GLU PHE LYS LEU SER ASP PRO ASP GLU VAL SEQRES 5 A 96 ALA ARG ARG TRP GLY LYS ARG LYS ASN LYS PRO LYS MET SEQRES 6 A 96 ASN TYR GLU LYS LEU SER ARG GLY LEU ARG TYR TYR TYR SEQRES 7 A 96 ASP LYS ASN ILE ILE HIS LYS THR ALA GLY LYS ARG TYR SEQRES 8 A 96 VAL TYR ARG PHE VAL HELIX 1 H1 LEU A 27 THR A 36 1 10 HELIX 2 H2 SER A 39 GLN A 41 5 3 HELIX 3 H3 ASP A 59 LYS A 67 5 9 HELIX 4 H4 TYR A 76 TYR A 85 5 10 SHEET 1 A 2 SER A 45 THR A 47 0 SHEET 2 A 2 GLU A 52 LYS A 54 -1 N LYS A 54 O SER A 45 SHEET 1 B 2 ILE A 92 LYS A 94 0 SHEET 2 B 2 TYR A 102 PHE A 104 -1 N ARG A 103 O HIS A 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000