PDB Short entry for 2V65 HEADER OXIDOREDUCTASE 13-JUL-07 2V65 TITLE APO LDH FROM THE PSYCHROPHILE C. GUNNARI COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE DEHYDROGENASE A CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LDH-A; COMPND 5 EC: 1.1.1.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAMPSOCEPHALUS GUNNARI; SOURCE 3 ORGANISM_COMMON: MACKEREL ICEFISH; SOURCE 4 ORGANISM_TAXID: 52237; SOURCE 5 TISSUE: MUSCLE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-11A KEYWDS OXIDOREDUCTASE, LACTATE DEHYDROGENASE, NAD, FISH, GLYCOLYSIS EXPDTA X-RAY DIFFRACTION AUTHOR N.COQUELLE,D.MADERN,F.VELLIEUX REVDAT 6 13-DEC-23 2V65 1 REMARK REVDAT 5 03-APR-19 2V65 1 REMARK REVDAT 4 15-JAN-14 2V65 1 KEYWDS JRNL REMARK VERSN REVDAT 4 2 1 FORMUL HETATM MASTER REVDAT 3 24-FEB-09 2V65 1 VERSN REVDAT 2 13-NOV-07 2V65 1 JRNL REVDAT 1 25-SEP-07 2V65 0 JRNL AUTH N.COQUELLE,E.FIORAVANTI,M.WEIK,F.VELLIEUX,D.MADERN JRNL TITL ACTIVITY, STABILITY AND STRUCTURAL STUDIES OF LACTATE JRNL TITL 2 DEHYDROGENASES ADAPTED TO EXTREME THERMAL ENVIRONMENTS. JRNL REF J.MOL.BIOL. V. 374 547 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17936781 JRNL DOI 10.1016/J.JMB.2007.09.049 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4900337.220 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 28632 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1432 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2726 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 144 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4972 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.01000 REMARK 3 B22 (A**2) : 2.01000 REMARK 3 B33 (A**2) : -4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.950 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.190 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.880 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.830 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.580 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 50.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_JPP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_JPP.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2V65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1290033189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97773 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28796 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 2.970 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.09 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1V6A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.8, 0.2M PROLINE, 14% REMARK 280 PEG 3350, 4 DEG C, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.89500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.89500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.89500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.89500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.89500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.89500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.89500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.89500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -165.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -113.79000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -109.90000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 -113.79000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -109.90000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -154.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1019 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1132 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 101 REMARK 465 GLN A 102 REMARK 465 GLN A 103 REMARK 465 GLU A 104 REMARK 465 MET B 1 REMARK 465 ARG B 101 REMARK 465 GLN B 102 REMARK 465 GLN B 103 REMARK 465 GLU B 104 REMARK 465 GLY B 105 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 13 CB CG CD CE NZ REMARK 480 LYS A 58 CB CG CD CE NZ REMARK 480 LYS A 83 CB CG CD CE NZ REMARK 480 ARG A 109 CD NE CZ NH1 NH2 REMARK 480 ASN A 111 CB CG OD1 ND2 REMARK 480 LEU A 112 CB CG CD1 CD2 REMARK 480 LYS A 151 CB CG CD CE NZ REMARK 480 ILE A 240 CG1 CG2 CD1 REMARK 480 LYS A 317 CB CG CD CE NZ REMARK 480 ARG B 109 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS B 151 CD CE NZ REMARK 480 LYS B 313 CD CE NZ REMARK 480 LYS B 327 CB CG CD CE NZ REMARK 480 GLU B 328 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND1 HIS B 68 NH1 ARG B 171 2555 1.84 REMARK 500 O HOH A 1102 O HOH A 1102 3554 1.99 REMARK 500 CD1 LEU A 42 CD1 LEU A 42 2545 2.03 REMARK 500 OG SER B 9 NE2 HIS B 304 3555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 44 72.52 41.17 REMARK 500 SER A 70 -15.74 -48.85 REMARK 500 LYS A 74 24.71 -140.26 REMARK 500 GLU A 107 149.07 178.59 REMARK 500 ARG A 157 -34.73 -35.82 REMARK 500 LEU A 242 -43.63 -136.33 REMARK 500 SER A 247 -54.00 -164.05 REMARK 500 MET B 55 81.44 -64.12 REMARK 500 SER B 247 -29.15 -155.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1005 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1036 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B1003 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH B1014 DISTANCE = 6.20 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V6B RELATED DB: PDB REMARK 900 LACTATE DEHYDROGENASE APO FORM DBREF 2V65 A 1 1 PDB 2V65 2V65 1 1 DBREF 2V65 A 2 331 UNP O93541 LDHA_CHAGU 1 330 DBREF 2V65 B 1 1 PDB 2V65 2V65 1 1 DBREF 2V65 B 2 331 UNP O93541 LDHA_CHAGU 1 330 SEQRES 1 A 331 MET SER THR LYS GLU LYS LEU ILE SER HIS VAL MET LYS SEQRES 2 A 331 GLU GLU PRO VAL GLY SER ARG SER LYS VAL THR VAL VAL SEQRES 3 A 331 GLY VAL GLY MET VAL GLY MET ALA SER ALA ILE SER ILE SEQRES 4 A 331 LEU LEU LYS ASP LEU CYS ASP GLU LEU ALA MET VAL ASP SEQRES 5 A 331 VAL MET GLU ASP LYS LEU LYS GLY GLU VAL MET ASP LEU SEQRES 6 A 331 GLN HIS GLY SER LEU PHE LEU LYS THR LYS ILE VAL GLY SEQRES 7 A 331 ASP LYS ASP TYR SER VAL THR ALA ASN SER LYS VAL VAL SEQRES 8 A 331 VAL VAL THR ALA GLY ALA ARG GLN GLN GLU GLY GLU SER SEQRES 9 A 331 ARG LEU ASN LEU VAL GLN ARG ASN VAL ASN ILE PHE LYS SEQRES 10 A 331 PHE ILE ILE PRO ASN ILE VAL LYS TYR SER PRO ASN CYS SEQRES 11 A 331 ILE LEU MET VAL VAL SER ASN PRO VAL ASP ILE LEU THR SEQRES 12 A 331 TYR VAL ALA TRP LYS LEU SER GLY PHE PRO ARG HIS ARG SEQRES 13 A 331 VAL ILE GLY SER GLY THR ASN LEU ASP SER ALA ARG PHE SEQRES 14 A 331 ARG HIS LEU ILE GLY GLU LYS LEU HIS LEU HIS PRO SER SEQRES 15 A 331 SER CYS HIS ALA TRP ILE VAL GLY GLU HIS GLY ASP SER SEQRES 16 A 331 SER VAL PRO VAL TRP SER GLY VAL ASN VAL ALA GLY VAL SEQRES 17 A 331 SER LEU GLN GLY LEU ASN PRO GLN MET GLY THR GLU GLY SEQRES 18 A 331 ASP GLY GLU ASN TRP LYS ALA ILE HIS LYS GLU VAL VAL SEQRES 19 A 331 ASP GLY ALA TYR GLU VAL ILE LYS LEU LYS GLY TYR THR SEQRES 20 A 331 SER TRP ALA ILE GLY MET SER VAL ALA ASP LEU VAL GLU SEQRES 21 A 331 SER ILE ILE LYS ASN MET HIS LYS VAL HIS PRO VAL SER SEQRES 22 A 331 THR LEU VAL GLN GLY MET HIS GLY VAL LYS ASP GLU VAL SEQRES 23 A 331 PHE LEU SER VAL PRO CYS VAL LEU GLY ASN SER GLY LEU SEQRES 24 A 331 THR ASP VAL ILE HIS MET THR LEU LYS ALA GLU GLU GLU SEQRES 25 A 331 LYS GLN LEU GLN LYS SER ALA GLU THR LEU TRP GLY VAL SEQRES 26 A 331 GLN LYS GLU LEU THR LEU SEQRES 1 B 331 MET SER THR LYS GLU LYS LEU ILE SER HIS VAL MET LYS SEQRES 2 B 331 GLU GLU PRO VAL GLY SER ARG SER LYS VAL THR VAL VAL SEQRES 3 B 331 GLY VAL GLY MET VAL GLY MET ALA SER ALA ILE SER ILE SEQRES 4 B 331 LEU LEU LYS ASP LEU CYS ASP GLU LEU ALA MET VAL ASP SEQRES 5 B 331 VAL MET GLU ASP LYS LEU LYS GLY GLU VAL MET ASP LEU SEQRES 6 B 331 GLN HIS GLY SER LEU PHE LEU LYS THR LYS ILE VAL GLY SEQRES 7 B 331 ASP LYS ASP TYR SER VAL THR ALA ASN SER LYS VAL VAL SEQRES 8 B 331 VAL VAL THR ALA GLY ALA ARG GLN GLN GLU GLY GLU SER SEQRES 9 B 331 ARG LEU ASN LEU VAL GLN ARG ASN VAL ASN ILE PHE LYS SEQRES 10 B 331 PHE ILE ILE PRO ASN ILE VAL LYS TYR SER PRO ASN CYS SEQRES 11 B 331 ILE LEU MET VAL VAL SER ASN PRO VAL ASP ILE LEU THR SEQRES 12 B 331 TYR VAL ALA TRP LYS LEU SER GLY PHE PRO ARG HIS ARG SEQRES 13 B 331 VAL ILE GLY SER GLY THR ASN LEU ASP SER ALA ARG PHE SEQRES 14 B 331 ARG HIS LEU ILE GLY GLU LYS LEU HIS LEU HIS PRO SER SEQRES 15 B 331 SER CYS HIS ALA TRP ILE VAL GLY GLU HIS GLY ASP SER SEQRES 16 B 331 SER VAL PRO VAL TRP SER GLY VAL ASN VAL ALA GLY VAL SEQRES 17 B 331 SER LEU GLN GLY LEU ASN PRO GLN MET GLY THR GLU GLY SEQRES 18 B 331 ASP GLY GLU ASN TRP LYS ALA ILE HIS LYS GLU VAL VAL SEQRES 19 B 331 ASP GLY ALA TYR GLU VAL ILE LYS LEU LYS GLY TYR THR SEQRES 20 B 331 SER TRP ALA ILE GLY MET SER VAL ALA ASP LEU VAL GLU SEQRES 21 B 331 SER ILE ILE LYS ASN MET HIS LYS VAL HIS PRO VAL SER SEQRES 22 B 331 THR LEU VAL GLN GLY MET HIS GLY VAL LYS ASP GLU VAL SEQRES 23 B 331 PHE LEU SER VAL PRO CYS VAL LEU GLY ASN SER GLY LEU SEQRES 24 B 331 THR ASP VAL ILE HIS MET THR LEU LYS ALA GLU GLU GLU SEQRES 25 B 331 LYS GLN LEU GLN LYS SER ALA GLU THR LEU TRP GLY VAL SEQRES 26 B 331 GLN LYS GLU LEU THR LEU FORMUL 3 HOH *305(H2 O) HELIX 1 1 SER A 2 ILE A 8 1 7 HELIX 2 2 GLY A 30 LYS A 43 1 14 HELIX 3 3 MET A 55 HIS A 68 1 14 HELIX 4 4 GLY A 69 LEU A 73 5 5 HELIX 5 5 ASP A 84 ALA A 89 5 6 HELIX 6 6 SER A 108 SER A 131 1 24 HELIX 7 7 PRO A 141 LEU A 152 1 12 HELIX 8 8 PRO A 156 HIS A 158 5 3 HELIX 9 9 THR A 165 HIS A 181 1 17 HELIX 10 10 HIS A 183 SER A 185 5 3 HELIX 11 11 TRP A 203 VAL A 206 5 4 HELIX 12 12 ASN A 224 ASP A 234 1 11 HELIX 13 13 ASP A 234 GLY A 244 1 11 HELIX 14 14 SER A 247 LYS A 263 1 17 HELIX 15 15 LYS A 308 GLU A 328 1 21 HELIX 16 16 SER B 2 ILE B 8 1 7 HELIX 17 17 GLY B 30 LYS B 43 1 14 HELIX 18 18 MET B 55 HIS B 68 1 14 HELIX 19 19 GLY B 69 LEU B 73 5 5 HELIX 20 20 ASP B 84 ALA B 89 5 6 HELIX 21 21 SER B 108 SER B 131 1 24 HELIX 22 22 PRO B 141 GLY B 154 1 14 HELIX 23 23 PRO B 156 HIS B 158 5 3 HELIX 24 24 THR B 165 HIS B 181 1 17 HELIX 25 25 HIS B 183 SER B 185 5 3 HELIX 26 26 TRP B 203 VAL B 206 5 4 HELIX 27 27 ASN B 224 ASP B 234 1 11 HELIX 28 28 ASP B 234 GLY B 244 1 11 HELIX 29 29 SER B 247 LYS B 263 1 17 HELIX 30 30 LYS B 308 LYS B 327 1 20 SHEET 1 AA 6 LYS A 76 GLY A 79 0 SHEET 2 AA 6 GLU A 48 VAL A 52 1 O LEU A 49 N VAL A 78 SHEET 3 AA 6 VAL A 24 VAL A 27 1 O VAL A 24 N ALA A 50 SHEET 4 AA 6 VAL A 93 VAL A 96 1 O VAL A 93 N THR A 25 SHEET 5 AA 6 ILE A 134 VAL A 137 1 O ILE A 134 N VAL A 94 SHEET 6 AA 6 VAL A 160 GLY A 162 1 O ILE A 161 N VAL A 137 SHEET 1 AB 2 CYS A 187 HIS A 188 0 SHEET 2 AB 2 ASN A 207 VAL A 208 -1 O ASN A 207 N HIS A 188 SHEET 1 AC 2 ILE A 191 VAL A 192 0 SHEET 2 AC 2 VAL A 200 PRO A 201 -1 O VAL A 200 N VAL A 192 SHEET 1 AD 3 LYS A 267 LEU A 274 0 SHEET 2 AD 3 PHE A 286 GLY A 294 -1 O LEU A 287 N THR A 273 SHEET 3 AD 3 GLY A 297 VAL A 302 -1 O GLY A 297 N GLY A 294 SHEET 1 BA 6 LYS B 76 GLY B 79 0 SHEET 2 BA 6 GLU B 48 VAL B 52 1 O LEU B 49 N VAL B 78 SHEET 3 BA 6 VAL B 24 VAL B 27 1 O VAL B 24 N ALA B 50 SHEET 4 BA 6 VAL B 93 VAL B 96 1 O VAL B 93 N THR B 25 SHEET 5 BA 6 ILE B 134 VAL B 137 1 O ILE B 134 N VAL B 94 SHEET 6 BA 6 VAL B 160 GLY B 162 1 O ILE B 161 N VAL B 137 SHEET 1 BB 2 CYS B 187 HIS B 188 0 SHEET 2 BB 2 ASN B 207 VAL B 208 -1 O ASN B 207 N HIS B 188 SHEET 1 BC 2 ILE B 191 VAL B 192 0 SHEET 2 BC 2 VAL B 200 PRO B 201 -1 O VAL B 200 N VAL B 192 SHEET 1 BD 3 LYS B 267 LEU B 274 0 SHEET 2 BD 3 PHE B 286 GLY B 294 -1 O LEU B 287 N THR B 273 SHEET 3 BD 3 GLY B 297 VAL B 302 -1 O GLY B 297 N GLY B 294 CISPEP 1 ASN A 140 PRO A 141 0 -2.52 CISPEP 2 ASN B 140 PRO B 141 0 -3.05 CRYST1 113.790 113.790 109.900 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008788 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009099 0.00000