PDB Short entry for 2V9T HEADER STRUCTURAL PROTEIN/RECEPTOR 25-AUG-07 2V9T TITLE COMPLEX BETWEEN THE SECOND LRR DOMAIN OF SLIT2 AND THE TITLE 2 FIRST IG DOMAIN FROM ROBO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROUNDABOUT HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG1-2M, RESIDUES 61-166; COMPND 5 SYNONYM: H-ROBO-1, DELETED IN U TWENTY TWENTY, ROBO1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SLIT HOMOLOG 2 PROTEIN N-PRODUCT; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: SECOND LRR DOMAIN, RESIDUES 271-479; COMPND 12 SYNONYM: SLIT-2, SLIT2, SLIT HOMOLOG 2 PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293-EBNA1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: MODIFIED PTT3; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: HEK293-EBNA1; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: MODIFIED PTT3 KEYWDS STRUCTURAL PROTEIN-RECEPTOR COMPLEX, DEVELOPMENTAL PROTEIN, IG KEYWDS 2 DOMAIN, ROUNDABOUT, CHEMOTAXIS, LRR DOMAIN, IMMUNOGLOBULIN DOMAIN, KEYWDS 3 LEUCINE-RICH REPEAT, NEURONAL DEVELOPMENT, PHOSPHORYLATION, KEYWDS 4 EGF-LIKE DOMAIN, DISEASE MUTATION, SLIT2, LIGAND, MEMBRANE, KEYWDS 5 SECRETED, RECEPTOR, NEUROGENESIS, GLYCOPROTEIN, TRANSMEMBRANE, KEYWDS 6 PROTO-ONCOGENE, DIFFERENTIATION STRUCTURAL PROTEIN/RECEPTOR, KEYWDS 7 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.MORLOT,S.CUSACK,A.A.MCCARTHY REVDAT 5 29-AUG-12 2V9T 1 JRNL REMARK REVDAT 4 13-JUL-11 2V9T 1 VERSN REVDAT 3 24-FEB-09 2V9T 1 VERSN REVDAT 2 02-OCT-07 2V9T 1 JRNL REVDAT 1 25-SEP-07 2V9T 0 JRNL AUTH C.MORLOT,N.M.THIELENS,R.B.RAVELLI,W.HEMRIKA,R.A.ROMIJN, JRNL AUTH 2 P.GROS,S.CUSACK,A.A.MCCARTHY JRNL TITL STRUCTURAL INSIGHTS INTO THE SLIT-ROBO COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 14923 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17848514 JRNL DOI 10.1073/PNAS.0705310104 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MORLOT,W.HEMRIKA,R.A.ROMIJN,P.GROS,S.CUSACK,A.A.MCCARTHY REMARK 1 TITL CLONING, EXPRESSION, CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 ANALYSIS OF THE FIRST TWO IG DOMAINS FROM HUMAN ROUNDABOUT REMARK 1 TITL 3 1 (ROBO1). REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 689 2007 REMARK 1 REFN ISSN 1744-3091 REMARK 1 PMID 17671369 REMARK 1 DOI 10.1107/S1744309107033027 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 41951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2234 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2888 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2496 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 385 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.559 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2557 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3482 ; 1.565 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 6.578 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;40.892 ;23.784 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;13.778 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.034 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1923 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1215 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1715 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 327 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.268 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1657 ; 1.054 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2605 ; 1.583 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1003 ; 2.698 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 871 ; 4.439 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 11.6691 -32.2634 -6.7742 REMARK 3 T TENSOR REMARK 3 T11: -0.0423 T22: -0.0210 REMARK 3 T33: -0.0503 T12: -0.0081 REMARK 3 T13: -0.0016 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.0842 L22: 1.2204 REMARK 3 L33: 2.8672 L12: -0.5429 REMARK 3 L13: 0.2643 L23: -1.5599 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: -0.0571 S13: 0.2081 REMARK 3 S21: 0.0008 S22: -0.0151 S23: -0.0090 REMARK 3 S31: -0.0247 S32: 0.0985 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 269 B 478 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3315 -26.9891 -16.1992 REMARK 3 T TENSOR REMARK 3 T11: -0.0474 T22: -0.0276 REMARK 3 T33: -0.0181 T12: 0.0088 REMARK 3 T13: -0.0045 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 1.1294 L22: 1.2454 REMARK 3 L33: 0.5361 L12: 0.1587 REMARK 3 L13: -0.0109 L23: 0.1352 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0109 S13: 0.2307 REMARK 3 S21: -0.0185 S22: -0.0159 S23: 0.1357 REMARK 3 S31: -0.0638 S32: -0.0595 S33: 0.0219 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2V9T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-07. REMARK 100 THE PDBE ID CODE IS EBI-33290. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : TORODIAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42371 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.70 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.8 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.7 REMARK 200 R MERGE FOR SHELL (I) : 0.53 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.6 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 6000, 0.1M LI SO4, 0.1M REMARK 280 NA CITRATE, PH=5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 25.63500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 95.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.63500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 95.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 160 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 59 REMARK 465 ALA A 167 REMARK 465 ALA A 168 REMARK 465 ALA A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 SER B 479 REMARK 465 ALA B 480 REMARK 465 ALA B 481 REMARK 465 ALA B 482 REMARK 465 HIS B 483 REMARK 465 HIS B 484 REMARK 465 HIS B 485 REMARK 465 HIS B 486 REMARK 465 HIS B 487 REMARK 465 HIS B 488 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 60 OG REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 LYS B 359 CE NZ REMARK 470 ARG B 477 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS B 478 O HOH B 2256 2.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 61 98.46 152.78 REMARK 500 PRO A 115 -17.66 -47.12 REMARK 500 SER A 117 145.10 -178.47 REMARK 500 HIS A 134 86.54 -156.63 REMARK 500 SER A 138 110.23 -170.13 REMARK 500 ASN B 310 -159.99 -118.08 REMARK 500 TYR B 323 79.67 -101.76 REMARK 500 ASN B 334 -151.79 -106.54 REMARK 500 ASN B 358 -160.43 -124.64 REMARK 500 SER B 366 4.16 81.06 REMARK 500 ASN B 382 -156.74 -130.27 REMARK 500 ASP B 405 66.41 64.68 REMARK 500 ASP B 435 -166.69 -103.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V70 RELATED DB: PDB REMARK 900 THIRD LRR DOMAIN OF HUMAN SLIT2 REMARK 900 RELATED ID: 2V9Q RELATED DB: PDB REMARK 900 FIRST AND SECOND IG DOMAINS FROM HUMAN REMARK 900 ROBO1 REMARK 900 RELATED ID: 2V9R RELATED DB: PDB REMARK 900 FIRST AND SECOND IG DOMAINS FROM HUMAN REMARK 900 ROBO1 (FORM 2) REMARK 900 RELATED ID: 2V9S RELATED DB: PDB REMARK 900 SECOND LRR DOMAIN OF HUMAN SLIT2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A N160D MUTATION WAS MADE TO PREVENT POTENTIAL REMARK 999 GLYCOSYLATION DBREF 2V9T A 59 60 PDB 2V9T 2V9T 59 60 DBREF 2V9T A 61 166 UNP Q9Y6N7 ROBO1_HUMAN 61 166 DBREF 2V9T A 167 175 PDB 2V9T 2V9T 167 175 DBREF 2V9T B 269 270 PDB 2V9T 2V9T 269 270 DBREF 2V9T B 271 479 UNP O94813 SLIT2_HUMAN 271 479 DBREF 2V9T B 480 488 PDB 2V9T 2V9T 480 488 SEQADV 2V9T ASP A 160 UNP Q9Y6N7 ASN 160 ENGINEERED MUTATION SEQRES 1 A 117 GLY SER LEU ARG GLN GLU ASP PHE PRO PRO ARG ILE VAL SEQRES 2 A 117 GLU HIS PRO SER ASP LEU ILE VAL SER LYS GLY GLU PRO SEQRES 3 A 117 ALA THR LEU ASN CYS LYS ALA GLU GLY ARG PRO THR PRO SEQRES 4 A 117 THR ILE GLU TRP TYR LYS GLY GLY GLU ARG VAL GLU THR SEQRES 5 A 117 ASP LYS ASP ASP PRO ARG SER HIS ARG MET LEU LEU PRO SEQRES 6 A 117 SER GLY SER LEU PHE PHE LEU ARG ILE VAL HIS GLY ARG SEQRES 7 A 117 LYS SER ARG PRO ASP GLU GLY VAL TYR VAL CYS VAL ALA SEQRES 8 A 117 ARG ASN TYR LEU GLY GLU ALA VAL SER HIS ASP ALA SER SEQRES 9 A 117 LEU GLU VAL ALA ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 220 GLY SER LEU HIS CYS PRO ALA ALA CYS THR CYS SER ASN SEQRES 2 B 220 ASN ILE VAL ASP CYS ARG GLY LYS GLY LEU THR GLU ILE SEQRES 3 B 220 PRO THR ASN LEU PRO GLU THR ILE THR GLU ILE ARG LEU SEQRES 4 B 220 GLU GLN ASN THR ILE LYS VAL ILE PRO PRO GLY ALA PHE SEQRES 5 B 220 SER PRO TYR LYS LYS LEU ARG ARG ILE ASP LEU SER ASN SEQRES 6 B 220 ASN GLN ILE SER GLU LEU ALA PRO ASP ALA PHE GLN GLY SEQRES 7 B 220 LEU ARG SER LEU ASN SER LEU VAL LEU TYR GLY ASN LYS SEQRES 8 B 220 ILE THR GLU LEU PRO LYS SER LEU PHE GLU GLY LEU PHE SEQRES 9 B 220 SER LEU GLN LEU LEU LEU LEU ASN ALA ASN LYS ILE ASN SEQRES 10 B 220 CYS LEU ARG VAL ASP ALA PHE GLN ASP LEU HIS ASN LEU SEQRES 11 B 220 ASN LEU LEU SER LEU TYR ASP ASN LYS LEU GLN THR ILE SEQRES 12 B 220 ALA LYS GLY THR PHE SER PRO LEU ARG ALA ILE GLN THR SEQRES 13 B 220 MET HIS LEU ALA GLN ASN PRO PHE ILE CYS ASP CYS HIS SEQRES 14 B 220 LEU LYS TRP LEU ALA ASP TYR LEU HIS THR ASN PRO ILE SEQRES 15 B 220 GLU THR SER GLY ALA ARG CYS THR SER PRO ARG ARG LEU SEQRES 16 B 220 ALA ASN LYS ARG ILE GLY GLN ILE LYS SER LYS LYS PHE SEQRES 17 B 220 ARG CYS SER ALA ALA ALA HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *385(H2 O) HELIX 1 1 ASP B 435 HIS B 437 5 3 HELIX 2 2 LEU B 438 ASN B 448 1 11 HELIX 3 3 PRO B 460 ALA B 464 5 5 HELIX 4 4 ILE B 468 ILE B 471 5 4 HELIX 5 5 LYS B 472 PHE B 476 5 5 SHEET 1 AA 2 PHE A 66 GLU A 72 0 SHEET 2 AA 2 LYS A 90 ARG A 94 -1 O LYS A 90 N VAL A 71 SHEET 1 AB 5 LEU A 77 VAL A 79 0 SHEET 2 AB 5 ALA A 161 VAL A 165 1 O SER A 162 N LEU A 77 SHEET 3 AB 5 GLY A 143 ASN A 151 -1 O GLY A 143 N LEU A 163 SHEET 4 AB 5 THR A 98 LYS A 103 -1 O THR A 98 N ARG A 150 SHEET 5 AB 5 GLU A 106 ARG A 107 -1 O GLU A 106 N LYS A 103 SHEET 1 AC 4 LEU A 77 VAL A 79 0 SHEET 2 AC 4 ALA A 161 VAL A 165 1 O SER A 162 N LEU A 77 SHEET 3 AC 4 GLY A 143 ASN A 151 -1 O GLY A 143 N LEU A 163 SHEET 4 AC 4 GLY A 154 VAL A 157 -1 O GLY A 154 N ASN A 151 SHEET 1 AD 3 ALA A 85 LEU A 87 0 SHEET 2 AD 3 LEU A 127 PHE A 129 -1 O LEU A 127 N LEU A 87 SHEET 3 AD 3 ARG A 119 LEU A 121 -1 O MET A 120 N PHE A 128 SHEET 1 BA 8 THR B 278 SER B 280 0 SHEET 2 BA 8 ILE B 283 ASP B 285 -1 O ILE B 283 N SER B 280 SHEET 3 BA 8 GLU B 304 ARG B 306 1 O GLU B 304 N VAL B 284 SHEET 4 BA 8 ARG B 328 ASP B 330 1 O ARG B 328 N ILE B 305 SHEET 5 BA 8 SER B 352 VAL B 354 1 O SER B 352 N ILE B 329 SHEET 6 BA 8 LEU B 376 LEU B 378 1 O LEU B 376 N LEU B 353 SHEET 7 BA 8 LEU B 400 SER B 402 1 O LEU B 400 N LEU B 377 SHEET 8 BA 8 THR B 424 HIS B 426 1 O THR B 424 N LEU B 401 SHEET 1 BB 2 VAL B 314 ILE B 315 0 SHEET 2 BB 2 GLU B 338 LEU B 339 1 O GLU B 338 N ILE B 315 SHEET 1 BC 2 PHE B 432 ILE B 433 0 SHEET 2 BC 2 CYS B 457 SER B 459 1 N THR B 458 O PHE B 432 SSBOND 1 CYS A 89 CYS A 147 1555 1555 2.04 SSBOND 2 CYS B 273 CYS B 279 1555 1555 2.06 SSBOND 3 CYS B 277 CYS B 286 1555 1555 2.05 SSBOND 4 CYS B 434 CYS B 457 1555 1555 2.03 SSBOND 5 CYS B 436 CYS B 478 1555 1555 2.13 CISPEP 1 ARG A 94 PRO A 95 0 1.64 CISPEP 2 SER B 459 PRO B 460 0 -2.65 CRYST1 51.270 190.090 40.870 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005261 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024468 0.00000