PDB Short entry for 2V9W HEADER TRANSFERASE 27-AUG-07 2V9W TITLE COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX TITLE 2 CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE TITLE 3 NUCLEOTIDE IN THE TEMPLATE STRAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: DPO4; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *CP*TP*G)-3'; COMPND 10 CHAIN: C, E; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: 13-MER PRIMER; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*TP*TP*CP*AP*GP*DFTP*AP*GP*TP*CP*CP COMPND 15 *TP*TP*CP*CP*CP*CP*C)-3'; COMPND 16 CHAIN: D, F; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: 18-MER TEMPLATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B-DPO4-NHIS; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS DNA-DIRECTED DNA POLYMERASE, P2 DNA POLYMERASE IV, KEYWDS 2 NUCLEOTIDYLTRANSFERASE, MUTATOR PROTEIN, DNA REPLICATION, 4- KEYWDS 3 DIFLUOROTOLUENE, DNA REPAIR, DNA-BINDING, TRANSFERASE, METAL- KEYWDS 4 BINDING, TRANSLESION DNA POLYMERASE, DDCTP, CYTOPLASM, MAGNESIUM, KEYWDS 5 DNA DAMAGE EXPDTA X-RAY DIFFRACTION AUTHOR A.IRIMIA,P.S.PALLAN,M.EGLI REVDAT 4 13-DEC-23 2V9W 1 LINK REVDAT 3 24-FEB-09 2V9W 1 VERSN REVDAT 2 18-DEC-07 2V9W 1 JRNL REVDAT 1 30-OCT-07 2V9W 0 JRNL AUTH A.IRIMIA,R.L.EOFF,P.S.PALLAN,F.P.GUENGERICH,M.EGLI JRNL TITL STRUCTURE AND ACTIVITY OF Y-CLASS DNA POLYMERASE DPO4 FROM JRNL TITL 2 SULFOLOBUS SOLFATARICUS WITH TEMPLATES CONTAINING THE JRNL TITL 3 HYDROPHOBIC THYMINE ANALOG 2,4-DIFLUOROTOLUENE. JRNL REF J.BIOL.CHEM. V. 282 36421 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17951245 JRNL DOI 10.1074/JBC.M707267200 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1112496.090 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 16763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 813 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2464 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE : 0.4650 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 107 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.045 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5511 REMARK 3 NUCLEIC ACID ATOMS : 1224 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.17000 REMARK 3 B22 (A**2) : 14.99000 REMARK 3 B33 (A**2) : -6.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.91000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.55 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.52 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.80 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.070 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.370 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.550 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.570 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 34.21 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA_RNA_NEW.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : DDCTP.PARAM REMARK 3 PARAMETER FILE 5 : ION.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA_RNA_NEW.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : DDCTP.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2V9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16865 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 49.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BQ3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 MM NACL, 2%GLYCEROL, 10 MM TRIS PH REMARK 280 7.5, 2.5 MM CACL2, 0.5 MM DDCTP, 6% PEG 3350, 0.05 CALCIUM REMARK 280 ACETATE, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 93.37200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1644 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ILE B 344 REMARK 465 GLY B 345 REMARK 465 LEU B 346 REMARK 465 ASP B 347 REMARK 465 LYS B 348 REMARK 465 PHE B 349 REMARK 465 PHE B 350 REMARK 465 ASP B 351 REMARK 465 THR B 352 REMARK 465 DT F 1 REMARK 465 DT F 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 344 CA C O CB CG1 CG2 CD1 REMARK 470 ALA B 343 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC F 3 P DC F 3 OP3 -0.080 REMARK 500 DG F 5 O3' DFT F 6 P -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA F 7 C5' - C4' - O4' ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 9 -51.69 -26.86 REMARK 500 TYR A 10 44.81 -176.57 REMARK 500 PHE A 11 -102.17 3.55 REMARK 500 TYR A 12 -88.25 -34.40 REMARK 500 ALA A 13 -31.61 -36.56 REMARK 500 LYS A 24 157.21 -39.62 REMARK 500 ARG A 36 -95.22 -99.71 REMARK 500 PHE A 37 -35.08 -35.98 REMARK 500 GLU A 38 -60.97 135.43 REMARK 500 ALA A 46 146.12 -177.03 REMARK 500 VAL A 55 87.58 -50.63 REMARK 500 ILE A 67 -64.22 -101.00 REMARK 500 ALA A 71 -174.48 -44.95 REMARK 500 VAL A 84 -70.24 -49.91 REMARK 500 ALA A 102 -72.19 -84.19 REMARK 500 SER A 103 -162.63 -111.40 REMARK 500 ALA A 107 135.74 -173.76 REMARK 500 SER A 112 -61.17 -29.74 REMARK 500 ASP A 113 41.54 -104.04 REMARK 500 LYS A 114 18.55 -150.58 REMARK 500 LYS A 129 -18.42 -37.00 REMARK 500 LYS A 131 -34.58 -37.27 REMARK 500 LYS A 135 -19.98 176.33 REMARK 500 GLU A 136 -3.87 -146.20 REMARK 500 SER A 145 -156.76 -170.25 REMARK 500 ILE A 175 -9.83 -55.35 REMARK 500 ASP A 179 -144.73 -117.96 REMARK 500 ILE A 180 -126.24 -26.65 REMARK 500 ASP A 182 16.13 -68.73 REMARK 500 ASP A 204 -30.34 -38.69 REMARK 500 PHE A 210 -38.29 -17.63 REMARK 500 MET A 216 -26.12 168.91 REMARK 500 ASP A 231 36.79 73.93 REMARK 500 ASN A 234 -82.75 -107.33 REMARK 500 GLU A 235 105.51 24.80 REMARK 500 VAL A 249 -161.95 -126.92 REMARK 500 ARG A 253 -115.57 -78.02 REMARK 500 ASN A 254 61.56 133.43 REMARK 500 ARG A 256 -11.23 -154.29 REMARK 500 ILE A 261 -27.01 -156.81 REMARK 500 ILE A 269 -5.28 -48.65 REMARK 500 ASP A 277 -123.62 54.18 REMARK 500 THR A 290 -114.30 -82.09 REMARK 500 GLU A 291 -56.81 -139.70 REMARK 500 LEU A 293 -120.62 53.99 REMARK 500 ASP A 294 110.30 19.45 REMARK 500 LYS A 308 -68.03 -27.00 REMARK 500 GLU A 324 1.41 -55.17 REMARK 500 SER A 338 -155.31 -153.30 REMARK 500 LYS A 339 52.03 37.64 REMARK 500 REMARK 500 THIS ENTRY HAS 95 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2004 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH B2012 DISTANCE = 5.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1345 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 7 OD2 45.9 REMARK 620 3 PHE A 8 O 89.5 123.8 REMARK 620 4 ASP A 105 OD2 143.7 100.7 104.2 REMARK 620 5 DCT A1347 O1A 111.5 81.8 154.4 67.8 REMARK 620 6 DCT A1347 O1G 75.3 80.1 126.4 118.3 51.1 REMARK 620 7 DCT A1347 O3B 109.7 134.0 85.9 104.7 73.5 54.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1346 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 GLU A 106 OE1 109.7 REMARK 620 3 DCT A1347 O1A 86.9 147.9 REMARK 620 4 HOH A2059 O 103.2 123.0 76.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1344 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 7 OD2 REMARK 620 2 PHE B 8 O 91.5 REMARK 620 3 ASP B 105 OD2 75.1 123.1 REMARK 620 4 DCT B1346 O3B 121.1 97.2 137.3 REMARK 620 5 DCT B1346 O2B 139.2 128.7 86.0 55.4 REMARK 620 6 DCT B1346 O1A 68.8 150.5 74.2 76.5 71.4 REMARK 620 7 DCT B1346 O1G 62.1 106.9 113.7 59.6 95.0 44.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1345 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 106 OE1 REMARK 620 2 GLU B 106 OE2 49.8 REMARK 620 3 DCT B1346 O1A 146.8 97.7 REMARK 620 4 HOH B2011 O 58.9 92.0 126.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1346 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1344 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCT A1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCT B1346 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASL RELATED DB: PDB REMARK 900 OXOG-MODIFIED POSTINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 1S0M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCTIN A REMARK 900 TERNARY COMPLEX WITH A DNA POLYMERASE REMARK 900 RELATED ID: 2JEG RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND REMARK 900 X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 1RYS RELATED DB: PDB REMARK 900 REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2J6T RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6- REMARK 900 METHYLGUANINE MODIFIED DNA, AND DATP. REMARK 900 RELATED ID: 1N56 RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAININGABASIC REMARK 900 LESION REMARK 900 RELATED ID: 2ATL RELATED DB: PDB REMARK 900 UNMODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 1JX4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARYCOMPLEX REMARK 900 WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE REMARK 900 RELATED ID: 2C22 RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2VA2 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX REMARK 900 CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 1S97 RELATED DB: PDB REMARK 900 DPO4 WITH GT MISMATCH REMARK 900 RELATED ID: 2AGQ RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND REMARK 900 PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2JEJ RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND REMARK 900 X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 2ASJ RELATED DB: PDB REMARK 900 OXOG-MODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 2AGO RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND REMARK 900 PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2ASD RELATED DB: PDB REMARK 900 OXOG-MODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 1N48 RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX WITH DNA CONTAININGABASIC REMARK 900 LESION REMARK 900 RELATED ID: 1JXL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A Y-FAMILY DNA POLYMERASE IN A TERNARYCOMPLEX REMARK 900 WITH DNA SUBSTRATES AND AN INCOMING NUCLEOTIDE REMARK 900 RELATED ID: 2BQ3 RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2UVU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2J6U RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6- REMARK 900 METHYLGUANINE MODIFIED DNA, AND DGTP. REMARK 900 RELATED ID: 2AGP RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDESELECTION AND REMARK 900 PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 1S0N RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS REMARK 900 FOR BASE SUBSTITUTION AND FRAMESHIFT REMARK 900 RELATED ID: 2C2R RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2JEF RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOTIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE AND X-RAY REMARK 900 CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 1S0O RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS REMARK 900 FOR BASE SUBSTITUTION AND FRAMESHIFT REMARK 900 RELATED ID: 2UVW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2JEI RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF NUCLEOSIDE TRIPHOSPHATE REMARK 900 INCORPORATION OPPOSITE O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- STEADY-STATE KINETICS AND REMARK 900 X-RAY CRYSTALLOGRAPHY OF CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 2BQR RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2BQU RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2AU0 RELATED DB: PDB REMARK 900 UNMODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 1S9F RELATED DB: PDB REMARK 900 DPO WITH AT MATCHED REMARK 900 RELATED ID: 2C28 RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2C2E RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 1RYR RELATED DB: PDB REMARK 900 REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2UVV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2C2D RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF DCTP OPPOSITE 7,8- REMARK 900 DIHYDRO-8- OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2J6S RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS DPO4 DNA POLYMERASE, O6- REMARK 900 METHYLGUANINE MODIFIED DNA, AND DATP. REMARK 900 RELATED ID: 1S10 RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC LESION:STRUCTURAL BASIS REMARK 900 FOR BASE SUBSTITUTION AND FRAMESHIFT REMARK 900 RELATED ID: 2BR0 RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS SOLFATARICUS DPO4. REMARK 900 ANALYSIS AND CRYSTAL STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2UVR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA POLYMERASES WITH 8-OXOG REMARK 900 CONTAINING DNA TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2VA3 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS DPO4 AND DNA DUPLEX REMARK 900 CONTAINING A HYDROPHOBIC THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND DBREF 2V9W A -5 0 PDB 2V9W 2V9W -5 0 DBREF 2V9W A 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 2V9W B -5 0 PDB 2V9W 2V9W -5 0 DBREF 2V9W B 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 2V9W C 1 13 PDB 2V9W 2V9W 1 13 DBREF 2V9W D 1 18 PDB 2V9W 2V9W 1 18 DBREF 2V9W E 1 13 PDB 2V9W 2V9W 1 13 DBREF 2V9W F 1 18 PDB 2V9W 2V9W 1 18 SEQRES 1 A 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 A 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 A 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 A 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 A 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 A 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 A 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 A 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 A 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 A 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 A 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 A 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 A 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 A 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 A 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 A 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 A 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 A 358 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 A 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 A 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 A 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 A 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 A 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 A 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 A 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 A 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 A 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 A 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 B 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 B 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 B 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 B 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 B 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 B 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 B 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 B 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 B 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 B 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 B 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 B 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 B 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 B 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 B 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 B 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 B 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 B 358 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 B 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 B 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 B 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 B 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 B 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 B 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 B 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 B 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 B 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 B 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 C 13 DG DG DG DG DG DA DA DG DG DA DC DT DG SEQRES 1 D 18 DT DT DC DA DG DFT DA DG DT DC DC DT DT SEQRES 2 D 18 DC DC DC DC DC SEQRES 1 E 13 DG DG DG DG DG DA DA DG DG DA DC DT DG SEQRES 1 F 18 DT DT DC DA DG DFT DA DG DT DC DC DT DT SEQRES 2 F 18 DC DC DC DC DC HET DFT D 6 20 HET DFT F 6 20 HET CA A1345 1 HET CA A1346 1 HET DCT A1347 27 HET CA B1344 1 HET CA B1345 1 HET DCT B1346 27 HETNAM DFT 1-[2-DEOXYRIBOFURANOSYL]-2,4-DIFLUORO-5-METHYL-BENZENE- HETNAM 2 DFT 5'MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM DCT 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE FORMUL 4 DFT 2(C12 H15 F2 O6 P) FORMUL 7 CA 4(CA 2+) FORMUL 9 DCT 2(C9 H16 N3 O12 P3) FORMUL 13 HOH *157(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 ASN A 47 LYS A 52 1 6 HELIX 3 3 PRO A 60 LEU A 68 1 9 HELIX 4 4 ARG A 77 SER A 96 1 20 HELIX 5 5 SER A 112 VAL A 115 5 4 HELIX 6 6 ASP A 117 GLU A 134 1 18 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 GLY A 187 LYS A 195 1 9 HELIX 10 10 LYS A 196 GLY A 198 5 3 HELIX 11 11 VAL A 203 ILE A 208 5 6 HELIX 12 12 GLU A 209 GLY A 218 1 10 HELIX 13 13 GLY A 218 ARG A 230 1 13 HELIX 14 14 ASN A 257 GLU A 260 5 4 HELIX 15 15 ILE A 261 LEU A 276 1 16 HELIX 16 16 SER A 307 GLU A 324 1 18 HELIX 17 17 TYR B 10 ASN B 20 1 11 HELIX 18 18 PRO B 21 LYS B 24 5 4 HELIX 19 19 ASN B 47 LYS B 52 1 6 HELIX 20 20 PRO B 60 LEU B 68 1 9 HELIX 21 21 ARG B 77 ARG B 93 1 17 HELIX 22 22 SER B 112 VAL B 115 5 4 HELIX 23 23 ASP B 117 GLU B 134 1 18 HELIX 24 24 ASN B 147 LYS B 159 1 13 HELIX 25 25 ASP B 167 LEU B 178 1 12 HELIX 26 26 GLY B 187 LYS B 196 1 10 HELIX 27 27 LEU B 202 ILE B 208 5 7 HELIX 28 28 GLU B 209 GLY B 218 1 10 HELIX 29 29 GLY B 218 ARG B 230 1 13 HELIX 30 30 ASN B 257 LEU B 276 1 20 HELIX 31 31 SER B 307 ASP B 326 1 20 SHEET 1 AA 5 ILE A 99 GLU A 100 0 SHEET 2 AA 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 AA 5 VAL A 3 PHE A 8 -1 O LEU A 4 N LEU A 109 SHEET 4 AA 5 VAL A 140 SER A 145 -1 O THR A 141 N ASP A 7 SHEET 5 AA 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 AB 3 GLY A 41 VAL A 43 0 SHEET 2 AB 3 VAL A 28 PHE A 33 -1 O VAL A 32 N ALA A 42 SHEET 3 AB 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 AC 4 GLY A 246 ILE A 248 0 SHEET 2 AC 4 ARG A 332 PHE A 340 -1 O VAL A 335 N ARG A 247 SHEET 3 AC 4 PRO A 281 VAL A 289 -1 N LYS A 282 O SER A 338 SHEET 4 AC 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 BA 5 ILE B 99 SER B 103 0 SHEET 2 BA 5 GLU B 106 ASP B 110 -1 O GLU B 106 N ALA B 102 SHEET 3 BA 5 VAL B 3 PHE B 8 -1 O LEU B 4 N LEU B 109 SHEET 4 BA 5 VAL B 140 SER B 145 -1 O THR B 141 N ASP B 7 SHEET 5 BA 5 ILE B 163 VAL B 165 1 O LYS B 164 N ILE B 144 SHEET 1 BB 3 GLY B 41 ALA B 46 0 SHEET 2 BB 3 VAL B 28 PHE B 33 -1 O VAL B 30 N ALA B 44 SHEET 3 BB 3 VAL B 72 PRO B 75 1 O VAL B 72 N VAL B 29 SHEET 1 BC 4 ILE B 245 SER B 255 0 SHEET 2 BC 4 ILE B 330 PHE B 337 -1 O ILE B 330 N SER B 255 SHEET 3 BC 4 ALA B 283 THR B 290 -1 O HIS B 285 N ARG B 336 SHEET 4 BC 4 ILE B 295 THR B 301 -1 O VAL B 296 N ALA B 288 LINK O3' DG D 5 P DFT D 6 1555 1555 1.60 LINK O3' DFT D 6 P DA D 7 1555 1555 1.61 LINK O3' DG F 5 P DFT F 6 1555 1555 1.53 LINK O3' DFT F 6 P DA F 7 1555 1555 1.60 LINK OD1 ASP A 7 CA CA A1345 1555 1555 2.72 LINK OD2 ASP A 7 CA CA A1345 1555 1555 2.92 LINK OD2 ASP A 7 CA CA A1346 1555 1555 2.84 LINK O PHE A 8 CA CA A1345 1555 1555 2.52 LINK OD2 ASP A 105 CA CA A1345 1555 1555 2.50 LINK OE1 GLU A 106 CA CA A1346 1555 1555 2.61 LINK CA CA A1345 O1A DCT A1347 1555 1555 2.78 LINK CA CA A1345 O1G DCT A1347 1555 1555 3.11 LINK CA CA A1345 O3B DCT A1347 1555 1555 2.42 LINK CA CA A1346 O1A DCT A1347 1555 1555 2.59 LINK CA CA A1346 O HOH A2059 1555 1555 3.11 LINK OD2 ASP B 7 CA CA B1344 1555 1555 3.00 LINK O PHE B 8 CA CA B1344 1555 1555 2.50 LINK OD2 ASP B 105 CA CA B1344 1555 1555 2.60 LINK OE1 GLU B 106 CA CA B1345 1555 1555 2.56 LINK OE2 GLU B 106 CA CA B1345 1555 1555 2.70 LINK CA CA B1344 O3B DCT B1346 1555 1555 2.49 LINK CA CA B1344 O2B DCT B1346 1555 1555 2.83 LINK CA CA B1344 O1A DCT B1346 1555 1555 2.96 LINK CA CA B1344 O1G DCT B1346 1555 1555 2.71 LINK CA CA B1345 O1A DCT B1346 1555 1555 2.39 LINK CA CA B1345 O HOH B2011 1555 1555 3.05 CISPEP 1 LYS A 159 PRO A 160 0 0.03 CISPEP 2 LYS B 159 PRO B 160 0 0.05 SITE 1 AC1 4 ASP A 7 PHE A 8 ASP A 105 DCT A1347 SITE 1 AC2 5 ASP A 7 ASP A 105 GLU A 106 DCT A1347 SITE 2 AC2 5 DG C 13 SITE 1 AC3 4 ASP B 7 PHE B 8 ASP B 105 DCT B1346 SITE 1 AC4 6 ASP B 7 ASP B 105 GLU B 106 DCT B1346 SITE 2 AC4 6 HOH B2011 DG E 13 SITE 1 AC5 14 ASP A 7 PHE A 8 ASP A 9 TYR A 10 SITE 2 AC5 14 THR A 45 TYR A 48 ARG A 51 ASP A 105 SITE 3 AC5 14 LYS A 159 CA A1345 CA A1346 HOH A2059 SITE 4 AC5 14 DG C 13 DG D 5 SITE 1 AC6 16 ASP B 7 PHE B 8 TYR B 10 TYR B 12 SITE 2 AC6 16 ALA B 44 THR B 45 TYR B 48 ARG B 51 SITE 3 AC6 16 ASP B 105 LYS B 159 CA B1344 CA B1345 SITE 4 AC6 16 HOH B2005 HOH B2048 DG E 13 DG F 5 CRYST1 52.704 186.744 52.730 90.00 110.06 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018974 0.000000 0.006928 0.00000 SCALE2 0.000000 0.005355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020189 0.00000