PDB Short entry for 2VAF HEADER METAL BINDING PROTEIN 31-AUG-07 2VAF TITLE CRYSTAL STRUCTURE OF HUMAN CARDIAC CALSEQUESTRIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALSEQUESTRIN-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 22-399; COMPND 5 SYNONYM: CALSEQUESTRIN, CARDIAC MUSCLE ISOFORM, HUMAN CARDIAC COMPND 6 CALSEQUESTRIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: HEART; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CALCIUM, GLYCOPROTEIN, POLYMORPHISM, MUSCLE PROTEIN, DISEASE KEYWDS 2 MUTATION, SARCOPLASMIC RETICULUM, CRYSTAL STRUCTURE HUMAN CARDIAC KEYWDS 3 CALSEQUESTRIN, METAL-BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.KIM,B.YOUN,L.KEMPER,C.CAMPBELL,H.MILTING,M.VARSANYI,C.KANG REVDAT 6 13-DEC-23 2VAF 1 REMARK REVDAT 5 22-MAY-19 2VAF 1 REMARK REVDAT 4 24-FEB-09 2VAF 1 VERSN REVDAT 3 16-OCT-07 2VAF 1 JRNL REVDAT 2 02-OCT-07 2VAF 1 JRNL REVDAT 1 11-SEP-07 2VAF 0 SPRSDE 11-SEP-07 2VAF 2V0Q JRNL AUTH E.KIM,B.YOUN,L.KEMPER,C.CAMPBELL,H.MILTING,M.VARSANYI,C.KANG JRNL TITL CHARACTERIZATION OF HUMAN CARDIAC CALSEQUESTRIN AND ITS JRNL TITL 2 DELETERIOUS MUTANTS. JRNL REF J.MOL.BIOL. V. 373 1047 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17881003 JRNL DOI 10.1016/J.JMB.2007.08.055 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 4119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.325 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2873 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.986 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2VAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1290033658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07812 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11522 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1SJI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 84.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 8.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 75.32500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 75.32500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.73500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 75.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.86750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 75.32500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 170.60250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 75.32500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 170.60250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.86750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 75.32500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 75.32500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.73500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 75.32500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 75.32500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 113.73500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 75.32500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 170.60250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 75.32500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 56.86750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.32500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 56.86750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 75.32500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 170.60250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 75.32500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 75.32500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 113.73500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 227.47000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1352 REMARK 465 THR A 1353 REMARK 465 GLU A 1354 REMARK 465 ASP A 1355 REMARK 465 ASP A 1356 REMARK 465 ASP A 1357 REMARK 465 GLU A 1358 REMARK 465 ASP A 1359 REMARK 465 ASP A 1360 REMARK 465 ASP A 1361 REMARK 465 ASP A 1362 REMARK 465 ASP A 1363 REMARK 465 ASP A 1364 REMARK 465 ASN A 1365 REMARK 465 SER A 1366 REMARK 465 ASP A 1367 REMARK 465 GLU A 1368 REMARK 465 GLU A 1369 REMARK 465 ASP A 1370 REMARK 465 ASN A 1371 REMARK 465 ASP A 1372 REMARK 465 ASP A 1373 REMARK 465 SER A 1374 REMARK 465 ASP A 1375 REMARK 465 ASP A 1376 REMARK 465 ASP A 1377 REMARK 465 ASP A 1378 REMARK 465 ASP A 1379 REMARK 465 GLU A 1380 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A1038 NE2 HIS A1038 CD2 -0.068 REMARK 500 HIS A1067 NE2 HIS A1067 CD2 -0.071 REMARK 500 HIS A1169 NE2 HIS A1169 CD2 -0.067 REMARK 500 HIS A1225 NE2 HIS A1225 CD2 -0.069 REMARK 500 HIS A1250 NE2 HIS A1250 CD2 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A1242 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP A1242 CB - CG - CD1 ANGL. DEV. = -9.3 DEGREES REMARK 500 TRP A1242 CE2 - CD2 - CG ANGL. DEV. = -6.7 DEGREES REMARK 500 TRP A1242 CG - CD2 - CE3 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A1286 CD1 - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP A1286 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP A1299 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP A1299 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP A1324 CD1 - CG - CD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 TRP A1324 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A1342 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP A1342 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A1004 -158.17 -77.47 REMARK 500 ASN A1005 -152.12 -133.36 REMARK 500 ASP A1013 99.53 -68.66 REMARK 500 GLU A1020 -70.67 -50.99 REMARK 500 PRO A1040 86.83 -65.87 REMARK 500 SER A1042 76.34 -155.24 REMARK 500 SER A1043 -157.26 -103.48 REMARK 500 LEU A1058 -70.90 -52.35 REMARK 500 GLU A1066 55.27 36.26 REMARK 500 ALA A1069 -53.37 -166.36 REMARK 500 VAL A1073 -104.76 112.73 REMARK 500 ALA A1077 -121.84 -174.73 REMARK 500 LYS A1079 -133.99 31.22 REMARK 500 LYS A1085 -34.98 -177.02 REMARK 500 LYS A1086 3.48 134.43 REMARK 500 ASP A1090 -117.71 -86.03 REMARK 500 GLU A1091 -144.93 -115.13 REMARK 500 SER A1094 143.03 179.57 REMARK 500 LYS A1099 -43.36 66.76 REMARK 500 ASP A1101 -50.17 73.49 REMARK 500 ARG A1102 -35.21 -177.52 REMARK 500 THR A1103 149.66 179.63 REMARK 500 PRO A1126 -92.48 -123.05 REMARK 500 VAL A1127 -145.36 -120.76 REMARK 500 SER A1131 -64.64 -146.68 REMARK 500 SER A1132 -177.87 -64.51 REMARK 500 GLU A1140 53.51 -94.02 REMARK 500 GLN A1171 49.18 -83.56 REMARK 500 PRO A1172 -130.93 -35.41 REMARK 500 TYR A1173 -102.09 -138.79 REMARK 500 ILE A1174 -139.61 42.82 REMARK 500 ASP A1181 146.93 73.65 REMARK 500 SER A1189 71.92 62.42 REMARK 500 LYS A1191 -28.41 73.79 REMARK 500 GLU A1194 -151.85 -123.83 REMARK 500 PRO A1200 -90.36 -50.01 REMARK 500 ASP A1203 94.31 -51.67 REMARK 500 PRO A1205 88.39 -66.67 REMARK 500 ASN A1210 -114.79 -108.54 REMARK 500 LYS A1211 -118.75 -125.01 REMARK 500 THR A1214 -167.62 -117.93 REMARK 500 GLU A1215 -73.91 -47.99 REMARK 500 ARG A1227 -34.17 -162.16 REMARK 500 THR A1229 -82.47 47.20 REMARK 500 ARG A1234 -146.59 -135.71 REMARK 500 PRO A1235 -85.16 -46.21 REMARK 500 ASP A1245 98.49 57.13 REMARK 500 LEU A1246 -112.87 -101.27 REMARK 500 ASN A1247 -47.76 -178.45 REMARK 500 LYS A1257 -160.01 -71.96 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 1125 PRO A 1126 38.97 REMARK 500 GLN A 1171 PRO A 1172 92.17 REMARK 500 ILE A 1208 PRO A 1209 -136.10 REMARK 500 LYS A 1211 PRO A 1212 147.30 REMARK 500 ARG A 1227 PRO A 1228 -123.69 REMARK 500 LEU A 1333 PRO A 1334 148.47 REMARK 500 GLU A 1344 ASP A 1345 131.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A1343 -13.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 2VAF A 1003 1380 UNP O14958 CASQ2_HUMAN 22 399 SEQRES 1 A 378 GLY LEU ASN PHE PRO THR TYR ASP GLY LYS ASP ARG VAL SEQRES 2 A 378 VAL SER LEU SER GLU LYS ASN PHE LYS GLN VAL LEU LYS SEQRES 3 A 378 LYS TYR ASP LEU LEU CYS LEU TYR TYR HIS GLU PRO VAL SEQRES 4 A 378 SER SER ASP LYS VAL THR GLN LYS GLN PHE GLN LEU LYS SEQRES 5 A 378 GLU ILE VAL LEU GLU LEU VAL ALA GLN VAL LEU GLU HIS SEQRES 6 A 378 LYS ALA ILE GLY PHE VAL MET VAL ASP ALA LYS LYS GLU SEQRES 7 A 378 ALA LYS LEU ALA LYS LYS LEU GLY PHE ASP GLU GLU GLY SEQRES 8 A 378 SER LEU TYR ILE LEU LYS GLY ASP ARG THR ILE GLU PHE SEQRES 9 A 378 ASP GLY GLU PHE ALA ALA ASP VAL LEU VAL GLU PHE LEU SEQRES 10 A 378 LEU ASP LEU ILE GLU ASP PRO VAL GLU ILE ILE SER SER SEQRES 11 A 378 LYS LEU GLU VAL GLN ALA PHE GLU ARG ILE GLU ASP TYR SEQRES 12 A 378 ILE LYS LEU ILE GLY PHE PHE LYS SER GLU ASP SER GLU SEQRES 13 A 378 TYR TYR LYS ALA PHE GLU GLU ALA ALA GLU HIS PHE GLN SEQRES 14 A 378 PRO TYR ILE LYS PHE PHE ALA THR PHE ASP LYS GLY VAL SEQRES 15 A 378 ALA LYS LYS LEU SER LEU LYS MET ASN GLU VAL ASP PHE SEQRES 16 A 378 TYR GLU PRO PHE MET ASP GLU PRO ILE ALA ILE PRO ASN SEQRES 17 A 378 LYS PRO TYR THR GLU GLU GLU LEU VAL GLU PHE VAL LYS SEQRES 18 A 378 GLU HIS GLN ARG PRO THR LEU ARG ARG LEU ARG PRO GLU SEQRES 19 A 378 GLU MET PHE GLU THR TRP GLU ASP ASP LEU ASN GLY ILE SEQRES 20 A 378 HIS ILE VAL ALA PHE ALA GLU LYS SER ASP PRO ASP GLY SEQRES 21 A 378 TYR GLU PHE LEU GLU ILE LEU LYS GLN VAL ALA ARG ASP SEQRES 22 A 378 ASN THR ASP ASN PRO ASP LEU SER ILE LEU TRP ILE ASP SEQRES 23 A 378 PRO ASP ASP PHE PRO LEU LEU VAL ALA TYR TRP GLU LYS SEQRES 24 A 378 THR PHE LYS ILE ASP LEU PHE ARG PRO GLN ILE GLY VAL SEQRES 25 A 378 VAL ASN VAL THR ASP ALA ASP SER VAL TRP MET GLU ILE SEQRES 26 A 378 PRO ASP ASP ASP ASP LEU PRO THR ALA GLU GLU LEU GLU SEQRES 27 A 378 ASP TRP ILE GLU ASP VAL LEU SER GLY LYS ILE ASN THR SEQRES 28 A 378 GLU ASP ASP ASP GLU ASP ASP ASP ASP ASP ASP ASN SER SEQRES 29 A 378 ASP GLU GLU ASP ASN ASP ASP SER ASP ASP ASP ASP ASP SEQRES 30 A 378 GLU HELIX 1 1 SER A 1019 TYR A 1030 1 12 HELIX 2 2 VAL A 1046 GLU A 1066 1 21 HELIX 3 3 LYS A 1078 LYS A 1085 1 8 HELIX 4 4 ALA A 1111 ILE A 1123 1 13 HELIX 5 5 SER A 1132 GLU A 1140 1 9 HELIX 6 6 SER A 1157 PHE A 1170 1 14 HELIX 7 7 ASP A 1181 SER A 1189 1 9 HELIX 8 8 THR A 1214 GLN A 1226 1 13 HELIX 9 9 GLU A 1236 ASP A 1244 1 9 HELIX 10 10 ASP A 1259 ASN A 1276 1 18 HELIX 11 11 PHE A 1292 PHE A 1303 1 12 HELIX 12 12 THR A 1335 GLU A 1344 1 10 SHEET 1 AA 5 VAL A1016 LEU A1018 0 SHEET 2 AA 5 ILE A1070 VAL A1075 1 O PHE A1072 N VAL A1016 SHEET 3 AA 5 LEU A1032 TYR A1037 1 O LEU A1032 N GLY A1071 SHEET 4 AA 5 LEU A1095 LEU A1098 -1 O TYR A1096 N LEU A1035 SHEET 5 AA 5 THR A1103 ILE A1104 -1 O ILE A1104 N ILE A1097 SHEET 1 AB 5 GLU A1128 ILE A1130 0 SHEET 2 AB 5 PHE A1177 THR A1179 1 O ALA A1178 N ILE A1130 SHEET 3 AB 5 LYS A1147 PHE A1151 1 O LEU A1148 N PHE A1177 SHEET 4 AB 5 VAL A1195 TYR A1198 -1 O ASP A1196 N ILE A1149 SHEET 5 AB 5 PRO A1205 ILE A1208 -1 O ILE A1206 N PHE A1197 SHEET 1 AC 5 LEU A1230 ARG A1232 0 SHEET 2 AC 5 ILE A1284 ILE A1287 1 O ILE A1284 N ARG A1231 SHEET 3 AC 5 ILE A1249 PHE A1254 1 O ILE A1251 N LEU A1285 SHEET 4 AC 5 GLN A1311 ASN A1316 -1 O GLN A1311 N PHE A1254 SHEET 5 AC 5 SER A1322 VAL A1323 -1 O VAL A1323 N VAL A1314 CISPEP 1 PHE A 1006 PRO A 1007 0 -12.37 CISPEP 2 ILE A 1327 PRO A 1328 0 13.22 CRYST1 150.650 150.650 227.470 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006638 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004396 0.00000