PDB Short entry for 2VGH HEADER GROWTH FACTOR 17-DEC-97 2VGH TITLE HEPARIN-BINDING DOMAIN FROM VASCULAR ENDOTHELIAL GROWTH FACTOR, NMR, TITLE 2 MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR-165; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HEPARIN-BINDING DOMAIN; COMPND 5 SYNONYM: VEGF-165; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GROWTH FACTOR, HEPARIN-BINDING, ANGIOGENESIS EXPDTA SOLUTION NMR AUTHOR W.J.FAIRBROTHER,M.A.CHAMPE,H.W.CHRISTINGER,B.A.KEYT,M.A.STAROVASNIK REVDAT 3 16-MAR-22 2VGH 1 REMARK SEQADV REVDAT 2 24-FEB-09 2VGH 1 VERSN REVDAT 1 08-APR-98 2VGH 0 JRNL AUTH W.J.FAIRBROTHER,M.A.CHAMPE,H.W.CHRISTINGER,B.A.KEYT, JRNL AUTH 2 M.A.STAROVASNIK JRNL TITL SOLUTION STRUCTURE OF THE HEPARIN-BINDING DOMAIN OF VASCULAR JRNL TITL 2 ENDOTHELIAL GROWTH FACTOR. JRNL REF STRUCTURE V. 6 637 1998 JRNL REFN ISSN 0969-2126 JRNL PMID 9634701 JRNL DOI 10.1016/S0969-2126(98)00065-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DISCOVER REMARK 3 AUTHORS : MOLECULAR SIMULATIONS INC. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 2VGH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178731. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2QF-COSY; TOCSY (70 AND 100 MS); REMARK 210 NOESY(50; AND 200 MS); 15N-HSQC; REMARK 210 15N-TOCSY-HSQC(30 AND 70 MS); REMARK 210 15N-NOESY-HSQC(120 MS); 15N- REMARK 210 ROESY-HSQC(40 MS); HNHA; HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX500 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DGII, DISCOVER REMARK 210 METHOD USED : DISTANCE GEOMETRY/ SIMULATED REMARK 210 ANNEALING/RESTRAINED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMIZED MEAN STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 2 141.98 76.01 REMARK 500 GLU A 4 178.51 64.55 REMARK 500 ASN A 5 84.58 -150.50 REMARK 500 GLU A 12 -78.01 -61.24 REMARK 500 ARG A 13 -59.87 -137.08 REMARK 500 LYS A 15 41.80 -84.08 REMARK 500 LEU A 17 40.98 -94.91 REMARK 500 PRO A 22 44.80 -83.35 REMARK 500 GLN A 23 -54.66 -143.19 REMARK 500 PRO A 53 -73.45 -67.77 REMARK 500 ARG A 54 67.38 -154.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 2VGH A 1 55 UNP P15692 VEGFA_HUMAN 137 215 SEQADV 2VGH A UNP P15692 LYS 141 DELETION SEQADV 2VGH A UNP P15692 LYS 142 DELETION SEQADV 2VGH A UNP P15692 SER 143 DELETION SEQADV 2VGH A UNP P15692 VAL 144 DELETION SEQADV 2VGH A UNP P15692 ARG 145 DELETION SEQADV 2VGH A UNP P15692 GLY 146 DELETION SEQADV 2VGH A UNP P15692 LYS 147 DELETION SEQADV 2VGH A UNP P15692 GLY 148 DELETION SEQADV 2VGH A UNP P15692 LYS 149 DELETION SEQADV 2VGH A UNP P15692 GLY 150 DELETION SEQADV 2VGH A UNP P15692 GLN 151 DELETION SEQADV 2VGH A UNP P15692 LYS 152 DELETION SEQADV 2VGH A UNP P15692 ARG 153 DELETION SEQADV 2VGH A UNP P15692 LYS 154 DELETION SEQADV 2VGH A UNP P15692 ARG 155 DELETION SEQADV 2VGH A UNP P15692 LYS 156 DELETION SEQADV 2VGH A UNP P15692 LYS 157 DELETION SEQADV 2VGH A UNP P15692 SER 158 DELETION SEQADV 2VGH A UNP P15692 ARG 159 DELETION SEQADV 2VGH A UNP P15692 TYR 160 DELETION SEQADV 2VGH A UNP P15692 LYS 161 DELETION SEQADV 2VGH A UNP P15692 SER 162 DELETION SEQADV 2VGH A UNP P15692 TRP 163 DELETION SEQADV 2VGH A UNP P15692 SER 164 DELETION SEQADV 2VGH ASN A 5 UNP P15692 VAL 165 VARIANT SEQRES 1 A 55 ALA ARG GLN GLU ASN PRO CYS GLY PRO CYS SER GLU ARG SEQRES 2 A 55 ARG LYS HIS LEU PHE VAL GLN ASP PRO GLN THR CYS LYS SEQRES 3 A 55 CYS SER CYS LYS ASN THR ASP SER ARG CYS LYS ALA ARG SEQRES 4 A 55 GLN LEU GLU LEU ASN GLU ARG THR CYS ARG CYS ASP LYS SEQRES 5 A 55 PRO ARG ARG HELIX 1 1 ASP A 33 ALA A 38 1 6 SHEET 1 A 2 PHE A 18 GLN A 20 0 SHEET 2 A 2 CYS A 27 CYS A 29 -1 N SER A 28 O VAL A 19 SHEET 1 B 2 GLU A 42 ASN A 44 0 SHEET 2 B 2 ARG A 49 ASP A 51 -1 N ASP A 51 O GLU A 42 SSBOND 1 CYS A 7 CYS A 25 1555 1555 2.05 SSBOND 2 CYS A 10 CYS A 27 1555 1555 2.05 SSBOND 3 CYS A 29 CYS A 48 1555 1555 2.04 SSBOND 4 CYS A 36 CYS A 50 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000