PDB Short entry for 2VJV HEADER DNA BINDING PROTEIN 13-DEC-07 2VJV TITLE CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH LEFT END TITLE 2 26-MER DNA HAIRPIN AND A 6-MER DNA REPRESENTING THE LEFT END CLEAVAGE TITLE 3 SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPOSASE ORFA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-155; COMPND 5 SYNONYM: IS608 TRANSPOSASE; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*DA*DA*DA*DG*DC*DC*DC*DC*DT*DA*DG*DC*DTP*DT COMPND 9 *DT*DT*DA*DG*DC*DT*DA*DT*DG*DG*DG*DGP)-3'; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: LEFT END 26-MER HAIRPIN; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*DT*DA*DT*DT*DA*DCP)-3'; COMPND 15 CHAIN: E, F; COMPND 16 SYNONYM: 6-MER LEFT END CLEAVAGE SITE; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 STRAIN: PECAN2A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET32B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 12 ORGANISM_TAXID: 210; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 16 ORGANISM_TAXID: 210 KEYWDS DNA-BINDING PROTEIN, PROTEIN-DNA COMPLEX, HUH MOTIF, DNA STEM LOOP, KEYWDS 2 TRANSPOSITION, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.BARABAS,D.R.RONNING,C.GUYNET,A.B.HICKMAN,B.TON-HOANG,M.CHANDLER, AUTHOR 2 F.DYDA REVDAT 3 13-DEC-23 2VJV 1 LINK REVDAT 2 24-FEB-09 2VJV 1 VERSN REVDAT 1 19-FEB-08 2VJV 0 JRNL AUTH O.BARABAS,D.R.RONNING,C.GUYNET,A.B.HICKMAN,B.TON-HOANG, JRNL AUTH 2 M.CHANDLER,F.DYDA JRNL TITL MECHANISM OF IS200/IS605 FAMILY DNA TRANSPOSASES: ACTIVATION JRNL TITL 2 AND TRANSPOSON-DIRECTED TARGET SITE SELECTION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 132 208 2008 JRNL REFN ISSN 0092-8674 JRNL PMID 18243097 JRNL DOI 10.1016/J.CELL.2007.12.029 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1368904.850 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 37220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2497 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 78 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2046 REMARK 3 NUCLEIC ACID ATOMS : 1298 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 275 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66000 REMARK 3 B22 (A**2) : 1.98000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 3.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.390 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.760 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.010 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 9.780 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.980 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 36.25 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP_NOPUCKERS.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : MO4_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : MO4_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2VJV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034754. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTILAYER FOCUSING MIRROR REMARK 200 OPTICS : MULTILAYER FOCUSING OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2VIH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6-10% PEG 600 AND 50 MM SODIUM CITRATE REMARK 280 PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.14600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.08700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.20350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.08700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.14600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.20350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 5 REMARK 465 GLN A 131 REMARK 465 GLN A 132 REMARK 465 ASN A 133 REMARK 465 SER A 134 REMARK 465 ASN A 135 REMARK 465 ARG A 136 REMARK 465 PRO A 137 REMARK 465 LYS A 138 REMARK 465 GLN A 139 REMARK 465 LYS A 140 REMARK 465 GLU A 141 REMARK 465 LYS A 142 REMARK 465 TRP A 143 REMARK 465 LYS A 144 REMARK 465 SER A 145 REMARK 465 TYR A 146 REMARK 465 VAL A 147 REMARK 465 ASP A 148 REMARK 465 ASN A 149 REMARK 465 LEU A 150 REMARK 465 GLN A 151 REMARK 465 THR A 152 REMARK 465 LYS A 153 REMARK 465 ALA A 154 REMARK 465 LEU A 155 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 ALA B -1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 ALA B 4 REMARK 465 VAL B 5 REMARK 465 GLN B 131 REMARK 465 GLN B 132 REMARK 465 ASN B 133 REMARK 465 SER B 134 REMARK 465 ASN B 135 REMARK 465 ARG B 136 REMARK 465 PRO B 137 REMARK 465 LYS B 138 REMARK 465 GLN B 139 REMARK 465 LYS B 140 REMARK 465 GLU B 141 REMARK 465 LYS B 142 REMARK 465 TRP B 143 REMARK 465 LYS B 144 REMARK 465 SER B 145 REMARK 465 TYR B 146 REMARK 465 VAL B 147 REMARK 465 ASP B 148 REMARK 465 ASN B 149 REMARK 465 LEU B 150 REMARK 465 GLN B 151 REMARK 465 THR B 152 REMARK 465 LYS B 153 REMARK 465 ALA B 154 REMARK 465 LEU B 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 -160.04 -105.02 REMARK 500 ASN B 10 -153.49 -104.77 REMARK 500 SER B 16 100.62 -161.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA C 18 0.07 SIDE CHAIN REMARK 500 DA D 18 0.07 SIDE CHAIN REMARK 500 DT D 37 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1042 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2009 O REMARK 620 2 DG C 39 O6 179.1 REMARK 620 3 HOH C2044 O 91.3 89.5 REMARK 620 4 HOH C2045 O 97.8 81.8 89.4 REMARK 620 5 HOH C2047 O 91.9 88.6 86.4 169.6 REMARK 620 6 HOH C2050 O 91.2 88.0 177.2 91.5 92.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1042 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG D 39 O6 REMARK 620 2 HOH D2012 O 174.2 REMARK 620 3 HOH D2045 O 90.1 92.0 REMARK 620 4 HOH D2049 O 84.9 89.8 85.8 REMARK 620 5 HOH D2052 O 91.5 94.0 90.7 174.9 REMARK 620 6 HOH D2056 O 90.0 87.5 175.4 89.7 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E1042 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH E2013 O REMARK 620 2 HOH E2014 O 83.3 REMARK 620 3 HOH E2015 O 92.6 85.7 REMARK 620 4 HOH E2018 O 168.9 107.8 86.9 REMARK 620 5 HOH F2007 O 91.0 162.2 111.6 78.9 REMARK 620 6 HOH F2008 O 86.9 85.0 170.6 95.4 77.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C1042 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D1042 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E1042 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A6M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE REMARK 900 RELATED ID: 2A6O RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE IN COMPLEXWITH STEM- REMARK 900 LOOP DNA REMARK 900 RELATED ID: 2VJU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE IN COMPLEX WITH THE REMARK 900 COMPLETE RIGHT END 35 -MER DNA AND MANGANESE REMARK 900 RELATED ID: 2VHG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE IN COMPLEX WITH RIGHT REMARK 900 END 31-MER DNA REMARK 900 RELATED ID: 2VIC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ISHP608 TRANSPOSASE IN COMPLEX WITH LEFT REMARK 900 26-MER DNA AND MANGANESE REMARK 900 RELATED ID: 2VIH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH LEFT END REMARK 900 26-MER DNA REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ADDITION OF THE FIRST 5 RESIDUES (GSAMA) TO THE REMARK 999 DATABASE SEQUENCE ARE THE RESULT OF CLONING ARTIFACT DBREF 2VJV A -3 1 PDB 2VJV 2VJV -3 1 DBREF 2VJV A 2 155 UNP Q933Z0 Q933Z0_HELPY 2 155 DBREF 2VJV B -3 1 PDB 2VJV 2VJV -3 1 DBREF 2VJV B 2 155 UNP Q933Z0 Q933Z0_HELPY 2 155 DBREF 2VJV C 16 41 PDB 2VJV 2VJV 16 41 DBREF 2VJV D 16 41 PDB 2VJV 2VJV 16 41 DBREF 2VJV E -6 -1 PDB 2VJV 2VJV -6 -1 DBREF 2VJV F -6 -1 PDB 2VJV 2VJV -6 -1 SEQRES 1 A 159 GLY SER ALA MET ALA SER ASN ALA VAL LEU TYR LYS SER SEQRES 2 A 159 ASN HIS ASN VAL VAL TYR SER CYS LYS TYR HIS ILE VAL SEQRES 3 A 159 TRP CYS PRO LYS TYR ARG ARG LYS VAL LEU VAL GLY ALA SEQRES 4 A 159 VAL GLU MET ARG LEU LYS GLU ILE ILE GLN GLU VAL ALA SEQRES 5 A 159 LYS GLU LEU ARG VAL GLU ILE ILE GLU MET GLN THR ASP SEQRES 6 A 159 LYS ASP HIS ILE HIS ILE LEU ALA ASP ILE ASP PRO SER SEQRES 7 A 159 PHE GLY VAL MET LYS PHE ILE LYS THR ALA LYS GLY ARG SEQRES 8 A 159 SER SER ARG ILE LEU ARG GLN GLU PHE ASN HIS LEU LYS SEQRES 9 A 159 THR LYS LEU PRO THR LEU TRP THR ASN SER CYS PHE ILE SEQRES 10 A 159 SER THR VAL GLY GLY ALA PRO LEU ASN VAL VAL LYS GLN SEQRES 11 A 159 TYR ILE GLU ASN GLN GLN ASN SER ASN ARG PRO LYS GLN SEQRES 12 A 159 LYS GLU LYS TRP LYS SER TYR VAL ASP ASN LEU GLN THR SEQRES 13 A 159 LYS ALA LEU SEQRES 1 B 159 GLY SER ALA MET ALA SER ASN ALA VAL LEU TYR LYS SER SEQRES 2 B 159 ASN HIS ASN VAL VAL TYR SER CYS LYS TYR HIS ILE VAL SEQRES 3 B 159 TRP CYS PRO LYS TYR ARG ARG LYS VAL LEU VAL GLY ALA SEQRES 4 B 159 VAL GLU MET ARG LEU LYS GLU ILE ILE GLN GLU VAL ALA SEQRES 5 B 159 LYS GLU LEU ARG VAL GLU ILE ILE GLU MET GLN THR ASP SEQRES 6 B 159 LYS ASP HIS ILE HIS ILE LEU ALA ASP ILE ASP PRO SER SEQRES 7 B 159 PHE GLY VAL MET LYS PHE ILE LYS THR ALA LYS GLY ARG SEQRES 8 B 159 SER SER ARG ILE LEU ARG GLN GLU PHE ASN HIS LEU LYS SEQRES 9 B 159 THR LYS LEU PRO THR LEU TRP THR ASN SER CYS PHE ILE SEQRES 10 B 159 SER THR VAL GLY GLY ALA PRO LEU ASN VAL VAL LYS GLN SEQRES 11 B 159 TYR ILE GLU ASN GLN GLN ASN SER ASN ARG PRO LYS GLN SEQRES 12 B 159 LYS GLU LYS TRP LYS SER TYR VAL ASP ASN LEU GLN THR SEQRES 13 B 159 LYS ALA LEU SEQRES 1 C 26 DA DA DA DG DC DC DC DC DT DA DG DC DT SEQRES 2 C 26 DT DT DT DA DG DC DT DA DT DG DG DG DG SEQRES 1 D 26 DA DA DA DG DC DC DC DC DT DA DG DC DT SEQRES 2 D 26 DT DT DT DA DG DC DT DA DT DG DG DG DG SEQRES 1 E 6 DT DA DT DT DA DC SEQRES 1 F 6 DT DA DT DT DA DC HET MG C1042 1 HET MG D1042 1 HET MG E1042 1 HETNAM MG MAGNESIUM ION FORMUL 7 MG 3(MG 2+) FORMUL 10 HOH *275(H2 O) HELIX 1 1 LYS A 26 ARG A 29 5 4 HELIX 2 2 VAL A 33 LEU A 51 1 19 HELIX 3 3 GLY A 76 PHE A 96 1 21 HELIX 4 4 PHE A 96 LYS A 102 1 7 HELIX 5 5 PRO A 120 GLU A 129 1 10 HELIX 6 6 LYS B 26 ARG B 29 5 4 HELIX 7 7 VAL B 33 LEU B 51 1 19 HELIX 8 8 GLY B 76 PHE B 96 1 21 HELIX 9 9 PHE B 96 LYS B 102 1 7 HELIX 10 10 PRO B 120 GLU B 129 1 10 SHEET 1 AA 6 LYS A 8 SER A 9 0 SHEET 2 AA 6 VAL A 13 SER A 16 -1 O TYR A 15 N LYS A 8 SHEET 3 AA 6 CYS B 111 VAL B 116 1 O CYS B 111 N VAL A 14 SHEET 4 AA 6 LYS B 18 TRP B 23 -1 O LYS B 18 N VAL B 116 SHEET 5 AA 6 HIS B 64 ASP B 70 -1 O ILE B 65 N TRP B 23 SHEET 6 AA 6 GLU B 54 ASP B 61 -1 O GLU B 54 N ASP B 70 SHEET 1 AB 6 GLU A 54 ASP A 61 0 SHEET 2 AB 6 HIS A 64 ASP A 70 -1 O HIS A 64 N ASP A 61 SHEET 3 AB 6 LYS A 18 TRP A 23 -1 O TYR A 19 N ALA A 69 SHEET 4 AB 6 CYS A 111 VAL A 116 -1 O PHE A 112 N VAL A 22 SHEET 5 AB 6 VAL B 13 SER B 16 1 O VAL B 14 N ILE A 113 SHEET 6 AB 6 LYS B 8 SER B 9 -1 O LYS B 8 N TYR B 15 LINK O HOH B2009 MG MG C1042 1555 1555 2.07 LINK O6 DG C 39 MG MG C1042 1555 1555 2.26 LINK MG MG C1042 O HOH C2044 1555 1555 2.07 LINK MG MG C1042 O HOH C2045 1555 1555 2.08 LINK MG MG C1042 O HOH C2047 1555 1555 2.09 LINK MG MG C1042 O HOH C2050 1555 1555 2.07 LINK O6 DG D 39 MG MG D1042 1555 1555 2.22 LINK MG MG D1042 O HOH D2012 1555 1555 2.07 LINK MG MG D1042 O HOH D2045 1555 1555 2.06 LINK MG MG D1042 O HOH D2049 1555 1555 2.06 LINK MG MG D1042 O HOH D2052 1555 1555 2.08 LINK MG MG D1042 O HOH D2056 1555 1555 2.07 LINK MG MG E1042 O HOH E2013 1555 1555 2.07 LINK MG MG E1042 O HOH E2014 1555 1555 2.07 LINK MG MG E1042 O HOH E2015 1555 1555 2.07 LINK MG MG E1042 O HOH E2018 1555 1555 2.07 LINK MG MG E1042 O HOH F2007 1555 2555 2.07 LINK MG MG E1042 O HOH F2008 1555 2555 2.07 SITE 1 AC1 6 HOH B2009 DG C 39 HOH C2044 HOH C2045 SITE 2 AC1 6 HOH C2047 HOH C2050 SITE 1 AC2 6 DG D 39 HOH D2012 HOH D2045 HOH D2049 SITE 2 AC2 6 HOH D2052 HOH D2056 SITE 1 AC3 6 HOH E2013 HOH E2014 HOH E2015 HOH E2018 SITE 2 AC3 6 HOH F2007 HOH F2008 CRYST1 66.292 72.407 110.174 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009077 0.00000 MTRIX1 1 -0.985391 0.170267 -0.003787 33.59100 1 MTRIX2 1 0.170025 0.984788 0.035829 -3.88700 1 MTRIX3 1 0.009830 0.034662 -0.999351 57.71900 1