PDB Short entry for 2VLA HEADER HYDROLASE 11-JAN-08 2VLA TITLE CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BPUJI RECOGNITION DOMAIN TITLE 2 IN COMPLEX WITH COGNATE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RESTRICTION ENDONUCLEASE R.BPUJI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECOGNITION DOMAIN, RESIDUES 1-285; COMPND 5 SYNONYM: BPUJI; COMPND 6 EC: 3.1.21.4; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*GP*TP*AP*CP*CP*CP*GP*TP*GP *GP*A)-3'; COMPND 10 CHAIN: L; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*TP*CP*CP*AP*CP*GP*GP*GP*TP*AP *CP*C)-3'; COMPND 14 CHAIN: M; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PUMILUS; SOURCE 3 ORGANISM_TAXID: 1408; SOURCE 4 STRAIN: RFL1458; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2267; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PAL-BPUJI; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS RESTRICTION ENDONUCLEASE, HYDROLASE, ENDONUCLEASE, DNA RECOGNITION, KEYWDS 2 HELIX-TURN-HELIX EXPDTA X-RAY DIFFRACTION AUTHOR R.SUKACKAITE,S.GRAZULIS,M.BOCHTLER,V.SIKSNYS REVDAT 5 24-JUL-19 2VLA 1 REMARK REVDAT 4 16-JUN-09 2VLA 1 REMARK REVDAT 3 24-FEB-09 2VLA 1 VERSN REVDAT 2 13-MAY-08 2VLA 1 JRNL REVDAT 1 06-MAY-08 2VLA 0 JRNL AUTH R.SUKACKAITE,S.GRAZULIS,M.BOCHTLER,V.SIKSNYS JRNL TITL THE RECOGNITION DOMAIN OF THE BPUJI RESTRICTION ENDONUCLEASE JRNL TITL 2 IN COMPLEX WITH COGNATE DNA AT 1.3-A RESOLUTION. JRNL REF J.MOL.BIOL. V. 378 1084 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18433771 JRNL DOI 10.1016/J.JMB.2008.03.041 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 83.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 91374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10116 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6144 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 697 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2289 REMARK 3 NUCLEIC ACID ATOMS : 486 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 461 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.48000 REMARK 3 B22 (A**2) : -1.99000 REMARK 3 B33 (A**2) : -1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.043 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.727 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3074 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1981 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4268 ; 1.099 ; 2.164 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4867 ; 0.780 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 6.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;35.140 ;25.448 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 468 ;13.589 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;19.495 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3141 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 513 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 640 ; 0.229 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2227 ; 0.225 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1493 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1406 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 289 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.258 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.245 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.145 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1503 ; 3.119 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2462 ; 3.951 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1702 ; 5.414 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1806 ; 6.777 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VLA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1290034983. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101561 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 55.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM TARTRATE, 20% PEG3350, REMARK 280 PH 6.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.14600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 83.75650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.14600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 83.75650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 281 REMARK 465 SER A 282 REMARK 465 HIS A 283 REMARK 465 LYS A 284 REMARK 465 SER A 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CB CG SD CE REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 LYS A 46 CD CE NZ REMARK 470 ASP A 84 CB CG OD1 OD2 REMARK 470 GLU A 85 CB CG CD OE1 OE2 REMARK 470 LYS A 132 CD CE NZ REMARK 470 ARG A 235 CD NE CZ NH1 NH2 REMARK 470 LYS A 267 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 176 O HOH A 2232 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT L 103 O4' - C1' - N1 ANGL. DEV. = -5.3 DEGREES REMARK 500 DC L 105 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG M 206 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 72 -61.77 -103.70 REMARK 500 GLN A 134 104.36 -162.32 REMARK 500 GLN A 134 102.27 -163.35 REMARK 500 VAL A 164 -67.65 -121.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2023 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A2062 DISTANCE = 6.43 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG6 A 1281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1282 DBREF 2VLA A 1 285 UNP A3FMN7 A3FMN7_BACPU 1 285 DBREF 2VLA L 101 112 PDB 2VLA 2VLA 101 112 DBREF 2VLA M 201 212 PDB 2VLA 2VLA 201 212 SEQRES 1 A 285 MET ASN TYR ASN PRO GLU GLU GLN PHE ARG CYS THR ILE SEQRES 2 A 285 ILE ARG GLY LYS ALA LYS ASN MET LEU ASP ASN LEU LEU SEQRES 3 A 285 PRO ALA TYR ALA ASN ILE ILE ASP ASP ILE CYS PRO CYS SEQRES 4 A 285 ASP LYS ALA SER PHE VAL LYS ASP PHE ASN ASN ARG LEU SEQRES 5 A 285 ILE GLU ILE LEU GLY GLU GLU THR THR LYS LYS THR LEU SEQRES 6 A 285 ASP ASN HIS ARG THR GLU ILE ALA GLY LYS LEU PHE GLY SEQRES 7 A 285 MET PHE TYR GLU ASP ASP GLU VAL ILE PHE PRO SER GLY SEQRES 8 A 285 ARG THR ASN LYS TYR ILE GLU ASP SER ASP GLN PRO ALA SEQRES 9 A 285 PHE PHE LYS ASP ILE CYS PHE LYS PHE GLN PHE PRO ASN SEQRES 10 A 285 GLY MET ASP LYS LEU ASP LYS VAL ILE GLU LYS VAL GLY SEQRES 11 A 285 ALA LYS ILE GLN ILE ARG GLN PHE PRO TYR ILE LEU GLN SEQRES 12 A 285 VAL LEU LEU THR ALA ASP ASN ASN ASN ILE GLN LEU SER SEQRES 13 A 285 LYS ASP ASP ILE ALA TYR TYR VAL LEU ASN SER LEU GLN SEQRES 14 A 285 VAL LEU GLN GLY LYS ILE LYS PRO ILE GLU VAL ILE GLU SEQRES 15 A 285 LYS ILE ILE GLU ASP ARG SER ASN ASP ILE THR LYS LYS SEQRES 16 A 285 VAL ARG HIS PRO GLY LYS GLU THR SER TYR SER MET GLN SEQRES 17 A 285 HIS ILE ARG GLU GLN LEU ASN TYR LEU GLU LEU ALA ASN SEQRES 18 A 285 LEU ILE ARG ILE ASP GLY ASN LEU VAL LYS LEU ASN TYR SEQRES 19 A 285 ARG GLU ALA GLU ASN ILE ASN TYR ILE ALA GLN PHE TRP SEQRES 20 A 285 GLY ASN LYS PRO GLU PHE ASN ALA TYR LYS TYR ASP PHE SEQRES 21 A 285 THR SER GLU ASP ASP LYS LYS SER PHE PHE LYS ASP TRP SEQRES 22 A 285 GLN GLN TYR TYR SER ASN VAL ASN SER HIS LYS SER SEQRES 1 L 12 DG DG DT DA DC DC DC DG DT DG DG DA SEQRES 1 M 12 DT DC DC DA DC DG DG DG DT DA DC DC HET PG6 A1281 18 HET NA A1282 1 HETNAM PG6 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- HETNAM 2 PG6 ETHOXY}-ETHANE HETNAM NA SODIUM ION FORMUL 4 PG6 C12 H26 O6 FORMUL 5 NA NA 1+ FORMUL 6 HOH *461(H2 O) HELIX 1 1 MET A 21 ILE A 36 1 16 HELIX 2 2 LYS A 41 LEU A 56 1 16 HELIX 3 3 LYS A 62 ILE A 72 1 11 HELIX 4 4 GLY A 91 ASP A 99 1 9 HELIX 5 5 GLN A 102 LYS A 112 1 11 HELIX 6 6 LEU A 122 ALA A 131 1 10 HELIX 7 7 GLN A 137 ASN A 151 1 15 HELIX 8 8 ASP A 158 VAL A 164 1 7 HELIX 9 9 LEU A 168 GLN A 172 1 5 HELIX 10 10 PRO A 177 ASN A 190 1 14 HELIX 11 11 THR A 203 ALA A 220 1 18 HELIX 12 12 ALA A 237 GLN A 245 1 9 HELIX 13 13 GLU A 263 SER A 278 1 16 SHEET 1 AA 3 CYS A 39 ASP A 40 0 SHEET 2 AA 3 VAL A 86 PRO A 89 -1 O ILE A 87 N CYS A 39 SHEET 3 AA 3 PHE A 80 ASP A 83 -1 O TYR A 81 N PHE A 88 SHEET 1 AB 2 ILE A 223 ILE A 225 0 SHEET 2 AB 2 VAL A 230 LEU A 232 -1 O LYS A 231 N ARG A 224 LINK NA NA A1282 O GLY A 173 1555 1555 2.57 CISPEP 1 CYS A 37 PRO A 38 0 -5.33 CISPEP 2 PHE A 115 PRO A 116 0 -6.05 SITE 1 AC1 8 GLN A 134 GLN A 172 GLY A 173 ILE A 175 SITE 2 AC1 8 TRP A 247 ASN A 249 LYS A 250 NA A1282 SITE 1 AC2 2 GLY A 173 PG6 A1281 CRYST1 56.292 167.513 43.846 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022807 0.00000