PDB Short entry for 2VOA HEADER LYASE 11-FEB-08 2VOA TITLE STRUCTURE OF AN AP ENDONUCLEASE FROM ARCHAEOGLOBUS FULGIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXODEOXYRIBONUCLEASE III; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AF_EXO, XTHA; COMPND 5 EC: 4.2.99.18; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*CP*GP*GP*TP*AP*GP*CP*CP*GP)-3'; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*GP*GP*CP*TP*AP*CP*CP*GP*CP)-3'; COMPND 14 CHAIN: D; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3)-RIL; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 8 OTHER_DETAILS: DSM4304; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS EXOIII, AP ENDONUCLEASE, ARCHAEOGLOBUS FULGIDUS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR E.B.KUETTNER,R.SCHMIEDEL,T.GREINER-STOFFELE,N.STRATER REVDAT 7 13-DEC-23 2VOA 1 REMARK REVDAT 6 01-SEP-21 2VOA 1 REMARK HELIX SHEET REVDAT 5 29-MAY-19 2VOA 1 REMARK REVDAT 4 08-MAY-19 2VOA 1 SOURCE REMARK LINK REVDAT 3 20-JAN-09 2VOA 1 JRNL REMARK REVDAT 2 23-DEC-08 2VOA 1 REMARK REVDAT 1 09-DEC-08 2VOA 0 JRNL AUTH R.SCHMIEDEL,E.B.KUETTNER,A.KEIM,N.STRATER,T.GREINER-STOFFELE JRNL TITL STRUCTURE AND FUNCTION OF THE ABASIC SITE SPECIFICITY POCKET JRNL TITL 2 OF AN AP ENDONUCLEASE FROM ARCHAEOGLOBUS FULGIDUS. JRNL REF DNA REPAIR V. 8 219 2009 JRNL REFN ISSN 1568-7864 JRNL PMID 19015049 JRNL DOI 10.1016/J.DNAREP.2008.10.009 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.B.KUETTNER,S.PFEIFER,A.KEIM,T.GREINER-STOFFELE,N.STRATER REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY CHARACTERIZATION OF REMARK 1 TITL 2 TWO THERMOSTABLE DNA NUCLEASES REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 62 1290 2006 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17142920 REMARK 1 DOI 10.1107/S1744309106050548 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 63550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4639 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.4660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4204 REMARK 3 NUCLEIC ACID ATOMS : 404 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : -1.32000 REMARK 3 B33 (A**2) : 1.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4787 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6570 ; 1.398 ; 2.070 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 5.958 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 213 ;35.469 ;23.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 762 ;14.120 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;17.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 704 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3533 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2033 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3230 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 258 ; 0.095 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.162 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2651 ; 0.675 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4207 ; 1.043 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2556 ; 1.741 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2363 ; 2.673 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 32.3288 -0.3962 14.5146 REMARK 3 T TENSOR REMARK 3 T11: -0.1416 T22: -0.1525 REMARK 3 T33: -0.1250 T12: -0.0147 REMARK 3 T13: -0.0070 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.3539 L22: 1.4669 REMARK 3 L33: 1.6046 L12: 0.4192 REMARK 3 L13: -0.3235 L23: -0.1218 REMARK 3 S TENSOR REMARK 3 S11: 0.0999 S12: -0.0929 S13: 0.0460 REMARK 3 S21: 0.0666 S22: -0.0282 S23: -0.0033 REMARK 3 S31: -0.0161 S32: 0.0490 S33: -0.0717 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 257 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0550 -2.6433 -20.2867 REMARK 3 T TENSOR REMARK 3 T11: -0.1130 T22: -0.0716 REMARK 3 T33: -0.0529 T12: 0.0287 REMARK 3 T13: 0.0211 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.9263 L22: 3.4086 REMARK 3 L33: 2.3797 L12: -0.0852 REMARK 3 L13: 0.6426 L23: 0.7540 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: -0.1942 S13: 0.1483 REMARK 3 S21: 0.2598 S22: 0.0572 S23: -0.0429 REMARK 3 S31: 0.0889 S32: 0.0297 S33: -0.0133 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 10 REMARK 3 RESIDUE RANGE : D 1 D 10 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6327 -3.2957 40.9635 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.1052 REMARK 3 T33: 0.0541 T12: -0.0766 REMARK 3 T13: -0.0352 T23: 0.0401 REMARK 3 L TENSOR REMARK 3 L11: 2.4136 L22: 2.7333 REMARK 3 L33: 6.5081 L12: 0.7244 REMARK 3 L13: 2.6903 L23: 3.7789 REMARK 3 S TENSOR REMARK 3 S11: 0.2441 S12: -0.5903 S13: -0.3567 REMARK 3 S21: 0.5286 S22: -0.1636 S23: 0.1292 REMARK 3 S31: 0.6180 S32: -0.5516 S33: -0.0805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED 5'-END PHOSPHATES OF DNA WERE NOT MODELED. REMARK 3 ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2VOA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1290035289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64871 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1AKO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING-DROP METHOD AT 292 K WITH 1 REMARK 280 MICROLITER OF RESERVOIR AND PROTEIN SOLUTION EACH. TRIS-HCL PH REMARK 280 8.5. PROTEIN: 17 MG/ML AF_EXO, 0.53 MM DS-DNA, 9 MM MES-NAOH PH REMARK 280 6, 0.28 M NACL., PH 7.8, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.40850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 217 TO GLY REMARK 400 ENGINEERED RESIDUE IN CHAIN B, VAL 217 TO GLY REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER B 114 C SER B 114 O 0.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 13 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG C 3 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG C 7 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC C 9 O4' - C4' - C3' ANGL. DEV. = -5.5 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC C 9 C3' - O3' - P ANGL. DEV. = 9.5 DEGREES REMARK 500 DG D 2 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT D 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA D 6 C4' - C3' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA D 6 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA D 6 C3' - O3' - P ANGL. DEV. = 11.7 DEGREES REMARK 500 DC D 7 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG D 9 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 103.85 85.37 REMARK 500 ASN A 64 -143.78 51.80 REMARK 500 PHE A 110 -80.24 70.54 REMARK 500 SER B 11 105.12 88.09 REMARK 500 ASN B 64 -142.41 53.77 REMARK 500 PHE B 110 -80.57 68.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 999 REMARK 999 SEQUENCE REMARK 999 V217G DBREF 2VOA A 1 257 UNP O29675 O29675_ARCFU 1 257 DBREF 2VOA B 1 257 UNP O29675 O29675_ARCFU 1 257 DBREF 2VOA C 1 10 PDB 2VOA 2VOA 1 10 DBREF 2VOA D 1 10 PDB 2VOA 2VOA 1 10 SEQADV 2VOA GLY A 217 UNP O29675 VAL 217 ENGINEERED MUTATION SEQADV 2VOA GLY B 217 UNP O29675 VAL 217 ENGINEERED MUTATION SEQRES 1 A 257 MET LEU LYS ILE ALA THR PHE ASN VAL ASN SER ILE ARG SEQRES 2 A 257 SER ARG LEU HIS ILE VAL ILE PRO TRP LEU LYS GLU ASN SEQRES 3 A 257 LYS PRO ASP ILE LEU CYS MET GLN GLU THR LYS VAL GLU SEQRES 4 A 257 ASN ARG LYS PHE PRO GLU ALA ASP PHE HIS ARG ILE GLY SEQRES 5 A 257 TYR HIS VAL VAL PHE SER GLY SER LYS GLY ARG ASN GLY SEQRES 6 A 257 VAL ALA ILE ALA SER LEU GLU GLU PRO GLU ASP VAL SER SEQRES 7 A 257 PHE GLY LEU ASP SER GLU PRO LYS ASP GLU ASP ARG LEU SEQRES 8 A 257 ILE ARG ALA LYS ILE ALA GLY ILE ASP VAL ILE ASN THR SEQRES 9 A 257 TYR VAL PRO GLN GLY PHE LYS ILE ASP SER GLU LYS TYR SEQRES 10 A 257 GLN TYR LYS LEU GLN TRP LEU GLU ARG LEU TYR HIS TYR SEQRES 11 A 257 LEU GLN LYS THR VAL ASP PHE ARG SER PHE ALA VAL TRP SEQRES 12 A 257 CYS GLY ASP MET ASN VAL ALA PRO GLU PRO ILE ASP VAL SEQRES 13 A 257 HIS SER PRO ASP LYS LEU LYS ASN HIS VAL OCS PHE HIS SEQRES 14 A 257 GLU ASP ALA ARG ARG ALA TYR LYS LYS ILE LEU GLU LEU SEQRES 15 A 257 GLY PHE VAL ASP VAL LEU ARG LYS ILE HIS PRO ASN GLU SEQRES 16 A 257 ARG ILE TYR THR PHE TYR ASP TYR ARG VAL LYS GLY ALA SEQRES 17 A 257 ILE GLU ARG GLY LEU GLY TRP ARG GLY ASP ALA ILE LEU SEQRES 18 A 257 ALA THR PRO PRO LEU ALA GLU ARG CYS VAL ASP CYS TYR SEQRES 19 A 257 ALA ASP ILE LYS PRO ARG LEU ALA GLU LYS PRO SER ASP SEQRES 20 A 257 HIS LEU PRO LEU VAL ALA VAL PHE ASP VAL SEQRES 1 B 257 MET LEU LYS ILE ALA THR PHE ASN VAL ASN SER ILE ARG SEQRES 2 B 257 SER ARG LEU HIS ILE VAL ILE PRO TRP LEU LYS GLU ASN SEQRES 3 B 257 LYS PRO ASP ILE LEU CYS MET GLN GLU THR LYS VAL GLU SEQRES 4 B 257 ASN ARG LYS PHE PRO GLU ALA ASP PHE HIS ARG ILE GLY SEQRES 5 B 257 TYR HIS VAL VAL PHE SER GLY SER LYS GLY ARG ASN GLY SEQRES 6 B 257 VAL ALA ILE ALA SER LEU GLU GLU PRO GLU ASP VAL SER SEQRES 7 B 257 PHE GLY LEU ASP SER GLU PRO LYS ASP GLU ASP ARG LEU SEQRES 8 B 257 ILE ARG ALA LYS ILE ALA GLY ILE ASP VAL ILE ASN THR SEQRES 9 B 257 TYR VAL PRO GLN GLY PHE LYS ILE ASP SER GLU LYS TYR SEQRES 10 B 257 GLN TYR LYS LEU GLN TRP LEU GLU ARG LEU TYR HIS TYR SEQRES 11 B 257 LEU GLN LYS THR VAL ASP PHE ARG SER PHE ALA VAL TRP SEQRES 12 B 257 CYS GLY ASP MET ASN VAL ALA PRO GLU PRO ILE ASP VAL SEQRES 13 B 257 HIS SER PRO ASP LYS LEU LYS ASN HIS VAL OCS PHE HIS SEQRES 14 B 257 GLU ASP ALA ARG ARG ALA TYR LYS LYS ILE LEU GLU LEU SEQRES 15 B 257 GLY PHE VAL ASP VAL LEU ARG LYS ILE HIS PRO ASN GLU SEQRES 16 B 257 ARG ILE TYR THR PHE TYR ASP TYR ARG VAL LYS GLY ALA SEQRES 17 B 257 ILE GLU ARG GLY LEU GLY TRP ARG GLY ASP ALA ILE LEU SEQRES 18 B 257 ALA THR PRO PRO LEU ALA GLU ARG CYS VAL ASP CYS TYR SEQRES 19 B 257 ALA ASP ILE LYS PRO ARG LEU ALA GLU LYS PRO SER ASP SEQRES 20 B 257 HIS LEU PRO LEU VAL ALA VAL PHE ASP VAL SEQRES 1 C 10 DG DC DG DG DT DA DG DC DC DG SEQRES 1 D 10 DC DG DG DC DT DA DC DC DG DC MODRES 2VOA OCS A 167 CYS CYSTEINESULFONIC ACID MODRES 2VOA OCS B 167 CYS CYSTEINESULFONIC ACID HET OCS A 167 9 HET OCS B 167 9 HETNAM OCS CYSTEINESULFONIC ACID FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 5 HOH *220(H2 O) HELIX 1 AA1 SER A 11 SER A 14 5 4 HELIX 2 AA2 ARG A 15 LYS A 27 1 13 HELIX 3 AA3 GLU A 39 PHE A 43 5 5 HELIX 4 AA4 PRO A 44 ARG A 50 1 7 HELIX 5 AA5 ASP A 87 ASP A 89 5 3 HELIX 6 AA6 SER A 114 VAL A 135 1 22 HELIX 7 AA7 GLU A 152 VAL A 156 5 5 HELIX 8 AA8 SER A 158 LEU A 162 5 5 HELIX 9 AA9 HIS A 169 GLU A 181 1 13 HELIX 10 AB1 VAL A 187 HIS A 192 1 6 HELIX 11 AB2 THR A 223 GLU A 228 1 6 HELIX 12 AB3 ILE A 237 ALA A 242 1 6 HELIX 13 AB4 SER B 11 SER B 14 5 4 HELIX 14 AB5 ARG B 15 LYS B 27 1 13 HELIX 15 AB6 GLU B 39 PHE B 43 5 5 HELIX 16 AB7 PRO B 44 ARG B 50 1 7 HELIX 17 AB8 ASP B 87 ASP B 89 5 3 HELIX 18 AB9 SER B 114 VAL B 135 1 22 HELIX 19 AC1 GLU B 152 VAL B 156 5 5 HELIX 20 AC2 HIS B 169 GLU B 181 1 13 HELIX 21 AC3 VAL B 187 HIS B 192 1 6 HELIX 22 AC4 THR B 223 GLU B 228 1 6 HELIX 23 AC5 ILE B 237 ALA B 242 1 6 SHEET 1 AA1 6 HIS A 54 SER A 60 0 SHEET 2 AA1 6 ARG A 63 SER A 70 -1 O SER A 70 N HIS A 54 SHEET 3 AA1 6 ILE A 30 GLN A 34 -1 N MET A 33 O ALA A 67 SHEET 4 AA1 6 LEU A 2 ASN A 8 1 N ALA A 5 O CYS A 32 SHEET 5 AA1 6 LEU A 251 PHE A 255 -1 O PHE A 255 N LEU A 2 SHEET 6 AA1 6 CYS A 230 ALA A 235 -1 N TYR A 234 O VAL A 252 SHEET 1 AA2 6 GLU A 75 PHE A 79 0 SHEET 2 AA2 6 LEU A 91 ILE A 96 -1 O LYS A 95 N GLU A 75 SHEET 3 AA2 6 ILE A 99 TYR A 105 -1 O VAL A 101 N ALA A 94 SHEET 4 AA2 6 ALA A 141 ASP A 146 1 O CYS A 144 N ILE A 102 SHEET 5 AA2 6 ASP A 218 ALA A 222 -1 O LEU A 221 N TRP A 143 SHEET 6 AA2 6 VAL A 185 ASP A 186 -1 N VAL A 185 O ALA A 222 SHEET 1 AA3 6 HIS B 54 SER B 60 0 SHEET 2 AA3 6 ARG B 63 SER B 70 -1 O SER B 70 N HIS B 54 SHEET 3 AA3 6 ILE B 30 GLN B 34 -1 N MET B 33 O ALA B 67 SHEET 4 AA3 6 LEU B 2 ASN B 8 1 N ALA B 5 O CYS B 32 SHEET 5 AA3 6 LEU B 251 PHE B 255 -1 O ALA B 253 N ILE B 4 SHEET 6 AA3 6 CYS B 230 ALA B 235 -1 N TYR B 234 O VAL B 252 SHEET 1 AA4 6 GLU B 75 PHE B 79 0 SHEET 2 AA4 6 LEU B 91 ILE B 96 -1 O LYS B 95 N GLU B 75 SHEET 3 AA4 6 ILE B 99 TYR B 105 -1 O VAL B 101 N ALA B 94 SHEET 4 AA4 6 ALA B 141 ASP B 146 1 O VAL B 142 N ILE B 102 SHEET 5 AA4 6 ASP B 218 ALA B 222 -1 O LEU B 221 N TRP B 143 SHEET 6 AA4 6 VAL B 185 ASP B 186 -1 N VAL B 185 O ALA B 222 LINK C VAL A 166 N OCS A 167 1555 1555 1.34 LINK C OCS A 167 N PHE A 168 1555 1555 1.33 LINK C VAL B 166 N OCS B 167 1555 1555 1.33 LINK C OCS B 167 N PHE B 168 1555 1555 1.34 CISPEP 1 GLU A 84 PRO A 85 0 -6.49 CISPEP 2 GLU B 84 PRO B 85 0 -9.77 CRYST1 67.786 60.817 72.349 90.00 91.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014752 0.000000 0.000314 0.00000 SCALE2 0.000000 0.016443 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013825 0.00000