PDB Short entry for 2VS0 HEADER CELL INVASION 17-APR-08 2VS0 TITLE STRUCTURAL ANALYSIS OF HOMODIMERIC STAPHYLOCOCCAL AUREUS TITLE 2 VIRULENCE FACTOR ESXA COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRULENCE FACTOR ESXA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: MU50; SOURCE 5 ATCC: 700699; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 OTHER_DETAILS: GENOMIC DNA KEYWDS SECRETED, VIRULENCE, FOUR HELICAL BUNDLE, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR R.SUNDARAMOORTHY,P.K.FYFE,W.N.HUNTER REVDAT 4 25-AUG-09 2VS0 1 HEADER KEYWDS REVDAT 3 24-FEB-09 2VS0 1 VERSN REVDAT 2 28-OCT-08 2VS0 1 JRNL REVDAT 1 26-AUG-08 2VS0 0 JRNL AUTH R.SUNDARAMOORTHY,P.K.FYFE,W.N.HUNTER JRNL TITL STRUCTURE OF STAPHYLOCOCCUS AUREUS ESXA SUGGESTS A JRNL TITL 2 CONTRIBUTION TO VIRULENCE BY ACTION AS A TRANSPORT JRNL TITL 3 CHAPERONE AND/OR ADAPTOR PROTEIN. JRNL REF J.MOL.BIOL. V. 383 603 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18773907 JRNL DOI 10.1016/J.JMB.2008.08.047 REMARK 2 REMARK 2 RESOLUTION. 1.4 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOODWITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 27515 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1906 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.01000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.659 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1423 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1246 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1932 ; 1.282 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2955 ; 0.742 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 193 ; 3.881 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;39.451 ;26.543 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;13.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.575 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 206 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1647 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 267 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 353 ; 0.235 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1182 ; 0.159 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 702 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 822 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 133 ; 0.225 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.255 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.203 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1104 ; 3.780 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1412 ; 4.327 ; 7.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 590 ; 3.107 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 508 ; 4.348 ; 4.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 85 4 REMARK 3 1 B 4 B 85 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1129 ; 0.43 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 1129 ; 0.43 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1129 ; 1.01 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1129 ; 1.01 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VS0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-08. REMARK 100 THE PDBE ID CODE IS EBI-35951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.975485 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28979 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.40 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.8 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.8 REMARK 200 R MERGE FOR SHELL (I) : 0.65 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 5.5, 80MM ZINC REMARK 280 ACETATE, 8% PEG 8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 86 REMARK 465 ASP A 87 REMARK 465 GLN A 88 REMARK 465 GLN A 89 REMARK 465 LEU A 90 REMARK 465 SER A 91 REMARK 465 ASN A 92 REMARK 465 ASN A 93 REMARK 465 PHE A 94 REMARK 465 GLY A 95 REMARK 465 LEU A 96 REMARK 465 GLN A 97 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 MSE B 3 REMARK 465 GLN B 88 REMARK 465 GLN B 89 REMARK 465 LEU B 90 REMARK 465 SER B 91 REMARK 465 ASN B 92 REMARK 465 ASN B 93 REMARK 465 PHE B 94 REMARK 465 GLY B 95 REMARK 465 LEU B 96 REMARK 465 GLN B 97 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 3 CG SE CE REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 GLN B 86 CG CD OE1 NE2 REMARK 470 ASP B 87 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 23 - O HOH B 2079 2.19 REMARK 500 O1 CAC B 1088 - O HOH B 2078 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 OE2 GLU A 85 O HOH B 2079 1556 2.04 REMARK 500 O HOH B 2079 OE2 GLU A 85 1554 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 62.08 -100.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MSE A 3 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CAC B1088 AS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CAC B1088 O1 REMARK 620 2 CAC B1088 O2 106.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1086 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 38A OE1 REMARK 620 2 GLU A 53B OE2 134.3 REMARK 620 3 GLU B 10 OE2 104.6 121.1 REMARK 620 4 GLU A 53A OE1 98.7 51.2 133.8 REMARK 620 5 GLU A 53B OE1 117.1 61.0 98.3 35.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1087 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2091 O REMARK 620 2 GLU A 52 OE1 105.3 REMARK 620 3 GLU B 38 OE2 109.7 99.1 REMARK 620 4 GLU A 10 OE2 107.2 120.9 114.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1088 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD2 REMARK 620 2 ASP A 23 OD1 57.5 REMARK 620 3 GLU B 53 OE2 101.9 158.7 REMARK 620 4 GLU B 85 OE2 94.0 94.3 92.4 REMARK 620 5 HOH A2092 O 88.4 85.0 89.5 176.5 REMARK 620 6 HOH A2093 O 157.3 99.8 100.6 88.3 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1089 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 31 OD2 REMARK 620 2 GLU A 44 OE2 128.0 REMARK 620 3 GLU A 44 OE1 94.0 54.9 REMARK 620 4 HOH A2094 O 104.7 71.7 122.9 REMARK 620 5 HOH A2095 O 84.6 146.3 123.1 112.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1089 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 85 OE2 REMARK 620 2 ASP B 23 OD1 99.0 REMARK 620 3 GLU B 70 OE2 113.4 95.8 REMARK 620 4 CAC B1088 O2 112.5 124.8 110.1 REMARK 620 5 HOH B2079 O 59.4 79.4 170.1 79.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CAC B1088 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1086 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1087 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1088 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1089 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1089 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VRZ RELATED DB: PDB REMARK 900 STRUCTURAL ANALYSIS OF HOMODIMERIC REMARK 900 STAPHYLOCOCCAL AUREUS ESXA DBREF 2VS0 A 1 97 UNP Q99WU4 ESXA_STAAM 1 97 DBREF 2VS0 B 1 97 UNP Q99WU4 ESXA_STAAM 1 97 SEQRES 1 A 97 MSE ALA MSE ILE LYS MSE SER PRO GLU GLU ILE ARG ALA SEQRES 2 A 97 LYS SER GLN SER TYR GLY GLN GLY SER ASP GLN ILE ARG SEQRES 3 A 97 GLN ILE LEU SER ASP LEU THR ARG ALA GLN GLY GLU ILE SEQRES 4 A 97 ALA ALA ASN TRP GLU GLY GLN ALA PHE SER ARG PHE GLU SEQRES 5 A 97 GLU GLN PHE GLN GLN LEU SER PRO LYS VAL GLU LYS PHE SEQRES 6 A 97 ALA GLN LEU LEU GLU GLU ILE LYS GLN GLN LEU ASN SER SEQRES 7 A 97 THR ALA ASP ALA VAL GLN GLU GLN ASP GLN GLN LEU SER SEQRES 8 A 97 ASN ASN PHE GLY LEU GLN SEQRES 1 B 97 MSE ALA MSE ILE LYS MSE SER PRO GLU GLU ILE ARG ALA SEQRES 2 B 97 LYS SER GLN SER TYR GLY GLN GLY SER ASP GLN ILE ARG SEQRES 3 B 97 GLN ILE LEU SER ASP LEU THR ARG ALA GLN GLY GLU ILE SEQRES 4 B 97 ALA ALA ASN TRP GLU GLY GLN ALA PHE SER ARG PHE GLU SEQRES 5 B 97 GLU GLN PHE GLN GLN LEU SER PRO LYS VAL GLU LYS PHE SEQRES 6 B 97 ALA GLN LEU LEU GLU GLU ILE LYS GLN GLN LEU ASN SER SEQRES 7 B 97 THR ALA ASP ALA VAL GLN GLU GLN ASP GLN GLN LEU SER SEQRES 8 B 97 ASN ASN PHE GLY LEU GLN MODRES 2VS0 MSE A 3 MET SELENOMETHIONINE MODRES 2VS0 MSE A 6 MET SELENOMETHIONINE MODRES 2VS0 MSE B 6 MET SELENOMETHIONINE HET MSE A 3 5 HET MSE A 6 8 HET MSE B 6 8 HET CAC B1088 5 HET ZN A1086 1 HET ZN A1087 1 HET ZN A1088 1 HET ZN B1089 1 HET ZN A1089 1 HETNAM CAC CACODYLATE ION HETNAM ZN ZINC ION HETNAM MSE SELENOMETHIONINE FORMUL 3 CAC C2 H6 AS O2 1- FORMUL 4 ZN 5(ZN 2+) FORMUL 5 MSE 3(C5 H11 N O2 SE) FORMUL 6 HOH *174(H2 O1) HELIX 1 1 SER A 7 TRP A 43 1 37 HELIX 2 2 PHE A 48 GLU A 85 1 38 HELIX 3 3 SER B 7 ASN B 42 1 36 HELIX 4 4 PHE B 48 GLN B 86 1 39 LINK C MSE A 3 N ILE A 4 1555 1555 1.34 LINK C LYS A 5 N MSE A 6 1555 1555 1.33 LINK C MSE A 6 N SER A 7 1555 1555 1.32 LINK ZN ZN A1086 OE1AGLU A 53 1555 1655 2.26 LINK ZN ZN A1086 OE1BGLU A 53 1555 1655 2.24 LINK ZN ZN A1086 OE1AGLU A 38 1555 1555 1.71 LINK ZN ZN A1086 OE2BGLU A 53 1555 1655 2.04 LINK ZN ZN A1086 OE2 GLU B 10 1555 1555 1.87 LINK ZN ZN A1087 OE2 GLU A 10 1555 1555 1.93 LINK ZN ZN A1087 O HOH A2091 1555 1555 1.97 LINK ZN ZN A1087 OE2 GLU B 38 1555 1555 2.00 LINK ZN ZN A1087 OE1 GLU A 52 1555 1546 1.99 LINK ZN ZN A1088 OE2 GLU B 85 1555 1556 2.01 LINK ZN ZN A1088 O HOH A2092 1555 1555 2.08 LINK ZN ZN A1088 O HOH A2093 1555 1555 2.08 LINK ZN ZN A1088 OD2 ASP A 23 1555 1555 2.26 LINK ZN ZN A1088 OD1 ASP A 23 1555 1555 2.24 LINK ZN ZN A1088 OE2 GLU B 53 1555 1655 2.05 LINK ZN ZN A1089 O HOH A2095 1555 1555 2.46 LINK ZN ZN A1089 O HOH A2094 1555 1555 1.81 LINK ZN ZN A1089 OE1 GLU A 44 1555 1555 2.37 LINK ZN ZN A1089 OE2 GLU A 44 1555 1555 2.38 LINK ZN ZN A1089 OD2 ASP B 31 1555 1564 1.95 LINK C LYS B 5 N MSE B 6 1555 1555 1.31 LINK C MSE B 6 N SER B 7 1555 1555 1.34 LINK ZN ZN B1089 O HOH B2079 1555 1555 1.83 LINK ZN ZN B1089 O2 CAC B1088 1555 1555 1.97 LINK ZN ZN B1089 OE2 GLU B 70 1555 1555 1.99 LINK ZN ZN B1089 OD1 ASP B 23 1555 1555 1.99 LINK ZN ZN B1089 OE2 GLU A 85 1555 1554 2.22 SITE 1 AC1 9 GLU A 85 GLY B 19 GLN B 20 ASP B 23 SITE 2 AC1 9 GLU B 70 LYS B 73 ZN B1089 HOH B2078 SITE 3 AC1 9 HOH B2079 SITE 1 AC2 3 GLU A 38 GLU A 53 GLU B 10 SITE 1 AC3 5 GLU A 10 SER A 49 GLU A 52 HOH A2091 SITE 2 AC3 5 GLU B 38 SITE 1 AC4 5 ASP A 23 HOH A2092 HOH A2093 GLU B 53 SITE 2 AC4 5 GLU B 85 SITE 1 AC5 6 GLU A 85 GLY B 19 ASP B 23 GLU B 70 SITE 2 AC5 6 CAC B1088 HOH B2079 SITE 1 AC6 4 GLU A 44 HOH A2094 HOH A2095 ASP B 31 CRYST1 25.773 39.069 43.029 67.41 84.51 88.76 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.038800 -0.000840 -0.003690 0.00000 SCALE2 0.000000 0.025602 -0.010645 0.00000 SCALE3 0.000000 0.000000 0.025285 0.00000 MTRIX1 1 0.656600 -0.728100 0.196800 23.72000 1 MTRIX2 1 -0.727800 -0.680100 -0.088290 62.78000 1 MTRIX3 1 0.198200 -0.085290 -0.976500 32.45000 1 HETATM 1 N MSE A 3 23.115 19.975 48.847 1.00 59.52 N ANISOU 1 N MSE A 3 7581 7550 7484 15 6 6 N HETATM 2 CA MSE A 3 22.648 20.543 47.549 1.00 58.25 C ANISOU 2 CA MSE A 3 7399 7385 7346 52 45 -64 C HETATM 3 C MSE A 3 23.002 19.602 46.394 1.00 56.85 C ANISOU 3 C MSE A 3 7185 7190 7223 5 1 0 C HETATM 4 O MSE A 3 22.158 18.811 45.958 1.00 55.73 O ANISOU 4 O MSE A 3 7021 7078 7075 51 79 13 O HETATM 5 CB MSE A 3 23.245 21.938 47.330 1.00 60.03 C ANISOU 5 CB MSE A 3 7646 7556 7604 -24 3 -12 C