PDB Short entry for 2VSP HEADER TRANSPORT PROTEIN 28-APR-08 2VSP TITLE CRYSTAL STRUCTURE OF THE FOURTH PDZ DOMAIN OF PDZ DOMAIN-CONTAINING TITLE 2 PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDZ DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: FOURTH PDZ DOMAIN, RESIDUES 375-459; COMPND 5 SYNONYM: CFTR-ASSOCIATED PROTEIN OF 70 KDA, NA/PI COTRANSPORTER C- COMPND 6 TERMINAL-ASSOCIATED PROTEIN, NAPI-CAP1, NA+/H+ EXCHANGER REGULATORY COMPND 7 FACTOR 3, SODIUM-HYDROGEN EXCHANGER REGULATORY FACTOR 3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 10 OTHER_DETAILS: MGC KEYWDS PDZ, MEMBRANE, CYTOPLASM, PHOSPHOPROTEIN, TRANSPORT PROTEIN, CASP EXPDTA X-RAY DIFFRACTION AUTHOR W.W.YUE,N.SHAFQAT,E.S.PILKA,C.JOHANSSON,J.W.MURRAY,J.ELKINS,A.ROOS, AUTHOR 2 C.COOPER,C.PHILLIPS,E.SALAH,F.VON DELFT,D.DOYLE,A.EDWARDS, AUTHOR 3 M.WIKSTROM,C.ARROWSMITH,C.BOUNTRA,U.OPPERMANN REVDAT 3 13-DEC-23 2VSP 1 REMARK REVDAT 2 24-JAN-18 2VSP 1 AUTHOR JRNL REVDAT 1 03-MAR-09 2VSP 0 JRNL AUTH W.W.YUE,N.SHAFQAT,E.S.PILKA,F.VON DELFT,C.JOHANSSON, JRNL AUTH 2 J.ELKINS,A.ROOS,J.W.MURRAY,D.DOYLE,A.EDWARDS,C.ARROWSMITH, JRNL AUTH 3 C.BOUNTRA,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF THE FOURTH PDZ DOMAIN OF PDZ JRNL TITL 2 DOMAIN-CONTAINING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 12764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6752 - 4.1184 1.00 2614 130 0.1788 0.2095 REMARK 3 2 4.1184 - 3.2704 1.00 2656 130 0.1898 0.2328 REMARK 3 3 3.2704 - 2.8574 1.00 2623 121 0.2247 0.2965 REMARK 3 4 2.8574 - 2.5964 1.00 2610 158 0.2669 0.3512 REMARK 3 5 2.5964 - 2.4104 0.62 1626 96 0.3067 0.3562 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 65.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22430 REMARK 3 B22 (A**2) : 0.22430 REMARK 3 B33 (A**2) : -0.44850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2370 REMARK 3 ANGLE : 1.024 3214 REMARK 3 CHIRALITY : 0.058 379 REMARK 3 PLANARITY : 0.003 426 REMARK 3 DIHEDRAL : 15.258 839 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -27.6119 13.3172 -16.3494 REMARK 3 T TENSOR REMARK 3 T11: 0.2512 T22: 0.3555 REMARK 3 T33: 0.2816 T12: 0.0465 REMARK 3 T13: 0.0805 T23: 0.0809 REMARK 3 L TENSOR REMARK 3 L11: 5.5487 L22: 2.1407 REMARK 3 L33: 1.0516 L12: -0.6079 REMARK 3 L13: -0.2495 L23: -0.4887 REMARK 3 S TENSOR REMARK 3 S11: -0.1279 S12: 1.3938 S13: 0.2637 REMARK 3 S21: -0.1426 S22: -0.1297 S23: 0.1571 REMARK 3 S31: -1.0109 S32: 0.0531 S33: -0.0350 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -19.9304 12.8745 -8.2706 REMARK 3 T TENSOR REMARK 3 T11: 0.2761 T22: 0.4486 REMARK 3 T33: 0.2807 T12: 0.0047 REMARK 3 T13: -0.0195 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 4.9759 L22: 0.8531 REMARK 3 L33: 2.3343 L12: 0.4672 REMARK 3 L13: 0.2025 L23: 0.9260 REMARK 3 S TENSOR REMARK 3 S11: -0.2102 S12: -0.1160 S13: 0.0152 REMARK 3 S21: 0.3496 S22: 0.0042 S23: -0.4547 REMARK 3 S31: -0.0964 S32: 0.4825 S33: 0.0047 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -28.7007 8.7699 -7.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.3447 T22: 0.2619 REMARK 3 T33: 0.3355 T12: 0.0378 REMARK 3 T13: 0.0149 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 3.9445 L22: 1.6250 REMARK 3 L33: 0.5996 L12: 1.2662 REMARK 3 L13: -1.0176 L23: -0.8424 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.2008 S13: -0.3604 REMARK 3 S21: 0.0208 S22: -0.0773 S23: 0.2841 REMARK 3 S31: 0.4117 S32: 0.0375 S33: -0.0008 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -40.9480 -13.1602 -15.1144 REMARK 3 T TENSOR REMARK 3 T11: 0.2309 T22: 0.5711 REMARK 3 T33: 0.4352 T12: 0.0630 REMARK 3 T13: -0.0560 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: -1.3834 L22: 2.0068 REMARK 3 L33: 3.4655 L12: -2.6275 REMARK 3 L13: 1.5265 L23: 1.3822 REMARK 3 S TENSOR REMARK 3 S11: -0.6681 S12: -0.1075 S13: -0.2621 REMARK 3 S21: 0.5088 S22: 0.1820 S23: 0.7750 REMARK 3 S31: 0.7732 S32: -1.1086 S33: -0.1324 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -46.2173 -12.6967 -4.6088 REMARK 3 T TENSOR REMARK 3 T11: 0.6527 T22: 0.4097 REMARK 3 T33: 0.7777 T12: -0.2738 REMARK 3 T13: -0.0788 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 3.6318 L22: 1.2386 REMARK 3 L33: 3.1709 L12: -1.2807 REMARK 3 L13: -0.8184 L23: 0.7418 REMARK 3 S TENSOR REMARK 3 S11: -0.3732 S12: 0.8685 S13: 0.3412 REMARK 3 S21: -0.6091 S22: 0.5111 S23: -0.2436 REMARK 3 S31: -0.5080 S32: 0.2834 S33: -0.0066 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -38.0311 -10.4800 -8.8046 REMARK 3 T TENSOR REMARK 3 T11: 0.5433 T22: 0.3559 REMARK 3 T33: 0.4740 T12: -0.0276 REMARK 3 T13: 0.0581 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 6.1783 L22: 2.6499 REMARK 3 L33: 4.0237 L12: -1.6280 REMARK 3 L13: -0.5022 L23: 0.0114 REMARK 3 S TENSOR REMARK 3 S11: -0.1143 S12: -0.0360 S13: -0.0611 REMARK 3 S21: 0.0431 S22: -0.2879 S23: 0.6023 REMARK 3 S31: 0.5226 S32: -0.5274 S33: -0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -17.3132 -14.7497 -17.2282 REMARK 3 T TENSOR REMARK 3 T11: 0.3745 T22: 0.4014 REMARK 3 T33: 0.2014 T12: 0.0560 REMARK 3 T13: -0.0852 T23: 0.0728 REMARK 3 L TENSOR REMARK 3 L11: 5.0733 L22: 1.4273 REMARK 3 L33: 1.2091 L12: -1.8927 REMARK 3 L13: 1.0498 L23: 3.4483 REMARK 3 S TENSOR REMARK 3 S11: -0.4876 S12: -0.0880 S13: 0.1228 REMARK 3 S21: -0.1408 S22: 0.4139 S23: 0.0245 REMARK 3 S31: 0.6829 S32: 0.5040 S33: -0.0013 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -13.8750 -18.6220 -17.4277 REMARK 3 T TENSOR REMARK 3 T11: 0.4060 T22: 0.4404 REMARK 3 T33: 0.2727 T12: -0.0039 REMARK 3 T13: -0.0641 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 4.3377 L22: 9.2106 REMARK 3 L33: 4.6290 L12: -4.3066 REMARK 3 L13: -0.5907 L23: -3.5432 REMARK 3 S TENSOR REMARK 3 S11: 0.2734 S12: -0.3561 S13: -0.5519 REMARK 3 S21: 0.4270 S22: 0.7160 S23: 1.5065 REMARK 3 S31: -0.4533 S32: 0.5184 S33: 0.3306 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -20.3969 -9.4516 -18.3499 REMARK 3 T TENSOR REMARK 3 T11: 0.3627 T22: 0.3692 REMARK 3 T33: 0.2798 T12: 0.1151 REMARK 3 T13: -0.0060 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 7.9296 L22: 4.0318 REMARK 3 L33: 4.9921 L12: 2.5807 REMARK 3 L13: 0.8893 L23: 0.1221 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.4524 S13: 0.7844 REMARK 3 S21: 0.0858 S22: 0.0560 S23: -0.0227 REMARK 3 S31: -0.4115 S32: 0.5497 S33: -0.0013 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -48.1353 14.8419 -11.8610 REMARK 3 T TENSOR REMARK 3 T11: 0.4553 T22: 0.9885 REMARK 3 T33: 0.7863 T12: 0.1079 REMARK 3 T13: 0.1146 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.1866 L22: 1.9628 REMARK 3 L33: 1.3569 L12: -0.2816 REMARK 3 L13: 3.1437 L23: 2.4330 REMARK 3 S TENSOR REMARK 3 S11: -0.2157 S12: -0.9827 S13: -0.4258 REMARK 3 S21: 0.3075 S22: 0.0506 S23: 1.3124 REMARK 3 S31: -0.4794 S32: -2.3833 S33: 0.0091 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -53.7702 6.8414 -28.7565 REMARK 3 T TENSOR REMARK 3 T11: 0.9522 T22: 0.5774 REMARK 3 T33: 0.8620 T12: 0.2857 REMARK 3 T13: -0.2740 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.4745 L22: 1.0296 REMARK 3 L33: 7.7663 L12: -1.8964 REMARK 3 L13: -6.1846 L23: 3.6633 REMARK 3 S TENSOR REMARK 3 S11: -0.2940 S12: 1.2075 S13: -0.7638 REMARK 3 S21: -1.7138 S22: -1.6063 S23: 1.5004 REMARK 3 S31: 0.3203 S32: -2.4700 S33: -0.1005 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -48.0314 10.6758 -16.8589 REMARK 3 T TENSOR REMARK 3 T11: 0.4080 T22: 0.5112 REMARK 3 T33: 0.5960 T12: 0.0412 REMARK 3 T13: -0.0827 T23: -0.0476 REMARK 3 L TENSOR REMARK 3 L11: 6.0761 L22: 4.3021 REMARK 3 L33: 7.1967 L12: 2.2532 REMARK 3 L13: 4.6361 L23: 1.2679 REMARK 3 S TENSOR REMARK 3 S11: 0.0941 S12: -0.5681 S13: -0.3042 REMARK 3 S21: -0.2909 S22: -0.4346 S23: 1.0746 REMARK 3 S31: 0.1927 S32: -1.2698 S33: 0.0006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2VSP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-08. REMARK 100 THE DEPOSITION ID IS D_1290036059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14236 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 64.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1G9O REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50% PEG 300; 0.20M NACL; 0.1M NA/K-PO4 REMARK 280 PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.66350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.67324 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.37133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 49.66350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 28.67324 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.37133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 49.66350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 28.67324 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.37133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.34647 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.74267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 57.34647 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.74267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 57.34647 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.74267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 373 REMARK 465 LYS A 457 REMARK 465 LYS A 458 REMARK 465 ALA A 459 REMARK 465 GLN A 460 REMARK 465 ASP A 461 REMARK 465 THR A 462 REMARK 465 VAL A 463 REMARK 465 SER B 373 REMARK 465 MET B 374 REMARK 465 LYS B 375 REMARK 465 GLY B 456 REMARK 465 LYS B 457 REMARK 465 LYS B 458 REMARK 465 ALA B 459 REMARK 465 GLN B 460 REMARK 465 ASP B 461 REMARK 465 THR B 462 REMARK 465 VAL B 463 REMARK 465 SER C 373 REMARK 465 LYS C 457 REMARK 465 LYS C 458 REMARK 465 ALA C 459 REMARK 465 GLN C 460 REMARK 465 ASP C 461 REMARK 465 THR C 462 REMARK 465 VAL C 463 REMARK 465 SER D 373 REMARK 465 LYS D 457 REMARK 465 LYS D 458 REMARK 465 ALA D 459 REMARK 465 GLN D 460 REMARK 465 ASP D 461 REMARK 465 THR D 462 REMARK 465 VAL D 463 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 375 CG CD CE NZ REMARK 470 GLU A 385 CG CD OE1 OE2 REMARK 470 ARG A 396 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 404 O REMARK 470 LYS A 448 CG CD CE NZ REMARK 470 ALA B 382 O REMARK 470 GLU B 385 CG CD OE1 OE2 REMARK 470 ASN B 386 CG OD1 ND2 REMARK 470 ARG B 396 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 404 CG CD CE NZ REMARK 470 GLU B 405 CG CD OE1 OE2 REMARK 470 LYS B 408 CG CD CE NZ REMARK 470 GLU B 420 CG CD OE1 OE2 REMARK 470 ASP B 433 CG OD1 OD2 REMARK 470 GLU B 437 CG CD OE1 OE2 REMARK 470 SER B 445 OG REMARK 470 SER B 446 O REMARK 470 LYS B 448 CG CD CE NZ REMARK 470 GLU C 385 CG CD OE1 OE2 REMARK 470 ASN C 386 CG OD1 ND2 REMARK 470 ARG C 396 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 444 CG CD OE1 NE2 REMARK 470 LYS C 448 CG CD CE NZ REMARK 470 MET D 374 CG SD CE REMARK 470 LYS D 375 CD CE NZ REMARK 470 GLU D 385 CG CD OE1 OE2 REMARK 470 HIS D 391 CG ND1 CD2 CE1 NE2 REMARK 470 ARG D 396 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 404 CD CE NZ REMARK 470 GLU D 405 CD OE1 OE2 REMARK 470 GLN D 407 CD OE1 NE2 REMARK 470 LYS D 408 CG CD CE NZ REMARK 470 GLU D 420 CG CD OE1 OE2 REMARK 470 LYS D 438 CD CE NZ REMARK 470 SER D 445 OG REMARK 470 LYS D 448 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 434 CB LYS D 438 1.93 REMARK 500 O HOH A 2012 O HOH A 2019 2.02 REMARK 500 NZ LYS D 377 OD2 ASP D 421 2.07 REMARK 500 O HOH A 2009 O HOH A 2011 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 420 CE MET C 374 5455 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 395 ARG A 396 -142.18 REMARK 500 GLY A 397 LEU A 398 134.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. DBREF 2VSP A 373 374 PDB 2VSP 2VSP 373 374 DBREF 2VSP A 375 459 UNP Q5T2W1 PDZD1_HUMAN 375 459 DBREF 2VSP A 460 463 PDB 2VSP 2VSP 460 463 DBREF 2VSP B 373 374 PDB 2VSP 2VSP 373 374 DBREF 2VSP B 375 459 UNP Q5T2W1 PDZD1_HUMAN 375 459 DBREF 2VSP B 460 463 PDB 2VSP 2VSP 460 463 DBREF 2VSP C 373 374 PDB 2VSP 2VSP 373 374 DBREF 2VSP C 375 459 UNP Q5T2W1 PDZD1_HUMAN 375 459 DBREF 2VSP C 460 463 PDB 2VSP 2VSP 460 463 DBREF 2VSP D 373 374 PDB 2VSP 2VSP 373 374 DBREF 2VSP D 375 459 UNP Q5T2W1 PDZD1_HUMAN 375 459 DBREF 2VSP D 460 463 PDB 2VSP 2VSP 460 463 SEQRES 1 A 91 SER MET LYS PRO LYS LEU CYS ARG LEU ALA LYS GLY GLU SEQRES 2 A 91 ASN GLY TYR GLY PHE HIS LEU ASN ALA ILE ARG GLY LEU SEQRES 3 A 91 PRO GLY SER PHE ILE LYS GLU VAL GLN LYS GLY GLY PRO SEQRES 4 A 91 ALA ASP LEU ALA GLY LEU GLU ASP GLU ASP VAL ILE ILE SEQRES 5 A 91 GLU VAL ASN GLY VAL ASN VAL LEU ASP GLU PRO TYR GLU SEQRES 6 A 91 LYS VAL VAL ASP ARG ILE GLN SER SER GLY LYS ASN VAL SEQRES 7 A 91 THR LEU LEU VAL CYS GLY LYS LYS ALA GLN ASP THR VAL SEQRES 1 B 91 SER MET LYS PRO LYS LEU CYS ARG LEU ALA LYS GLY GLU SEQRES 2 B 91 ASN GLY TYR GLY PHE HIS LEU ASN ALA ILE ARG GLY LEU SEQRES 3 B 91 PRO GLY SER PHE ILE LYS GLU VAL GLN LYS GLY GLY PRO SEQRES 4 B 91 ALA ASP LEU ALA GLY LEU GLU ASP GLU ASP VAL ILE ILE SEQRES 5 B 91 GLU VAL ASN GLY VAL ASN VAL LEU ASP GLU PRO TYR GLU SEQRES 6 B 91 LYS VAL VAL ASP ARG ILE GLN SER SER GLY LYS ASN VAL SEQRES 7 B 91 THR LEU LEU VAL CYS GLY LYS LYS ALA GLN ASP THR VAL SEQRES 1 C 91 SER MET LYS PRO LYS LEU CYS ARG LEU ALA LYS GLY GLU SEQRES 2 C 91 ASN GLY TYR GLY PHE HIS LEU ASN ALA ILE ARG GLY LEU SEQRES 3 C 91 PRO GLY SER PHE ILE LYS GLU VAL GLN LYS GLY GLY PRO SEQRES 4 C 91 ALA ASP LEU ALA GLY LEU GLU ASP GLU ASP VAL ILE ILE SEQRES 5 C 91 GLU VAL ASN GLY VAL ASN VAL LEU ASP GLU PRO TYR GLU SEQRES 6 C 91 LYS VAL VAL ASP ARG ILE GLN SER SER GLY LYS ASN VAL SEQRES 7 C 91 THR LEU LEU VAL CYS GLY LYS LYS ALA GLN ASP THR VAL SEQRES 1 D 91 SER MET LYS PRO LYS LEU CYS ARG LEU ALA LYS GLY GLU SEQRES 2 D 91 ASN GLY TYR GLY PHE HIS LEU ASN ALA ILE ARG GLY LEU SEQRES 3 D 91 PRO GLY SER PHE ILE LYS GLU VAL GLN LYS GLY GLY PRO SEQRES 4 D 91 ALA ASP LEU ALA GLY LEU GLU ASP GLU ASP VAL ILE ILE SEQRES 5 D 91 GLU VAL ASN GLY VAL ASN VAL LEU ASP GLU PRO TYR GLU SEQRES 6 D 91 LYS VAL VAL ASP ARG ILE GLN SER SER GLY LYS ASN VAL SEQRES 7 D 91 THR LEU LEU VAL CYS GLY LYS LYS ALA GLN ASP THR VAL FORMUL 5 HOH *104(H2 O) HELIX 1 1 GLY A 410 ALA A 415 1 6 HELIX 2 2 PRO A 435 GLN A 444 1 10 HELIX 3 3 GLY B 410 ALA B 415 1 6 HELIX 4 4 PRO B 435 SER B 445 1 11 HELIX 5 5 GLY C 410 ALA C 415 1 6 HELIX 6 6 PRO C 435 SER C 446 1 12 HELIX 7 7 GLY D 410 ALA D 415 1 6 HELIX 8 8 PRO D 435 SER D 446 1 12 SHEET 1 AA 4 PRO A 376 ALA A 382 0 SHEET 2 AA 4 ASN A 449 CYS A 455 -1 O VAL A 450 N LEU A 381 SHEET 3 AA 4 VAL A 422 VAL A 426 -1 O VAL A 422 N CYS A 455 SHEET 4 AA 4 VAL A 429 ASN A 430 -1 O VAL A 429 N VAL A 426 SHEET 1 BA 4 LYS B 377 LEU B 381 0 SHEET 2 BA 4 VAL B 450 CYS B 455 -1 O VAL B 450 N LEU B 381 SHEET 3 BA 4 VAL B 422 VAL B 426 -1 O VAL B 422 N CYS B 455 SHEET 4 BA 4 VAL B 429 ASN B 430 -1 O VAL B 429 N VAL B 426 SHEET 1 BB 2 LEU B 392 ILE B 395 0 SHEET 2 BB 2 LEU B 398 ILE B 403 -1 O LEU B 398 N ILE B 395 SHEET 1 CA 4 LYS C 375 ALA C 382 0 SHEET 2 CA 4 ASN C 449 GLY C 456 -1 O VAL C 450 N LEU C 381 SHEET 3 CA 4 VAL C 422 VAL C 426 -1 O VAL C 422 N CYS C 455 SHEET 4 CA 4 VAL C 429 ASN C 430 -1 O VAL C 429 N VAL C 426 SHEET 1 CB 2 LEU C 392 ALA C 394 0 SHEET 2 CB 2 SER C 401 ILE C 403 -1 O PHE C 402 N ASN C 393 SHEET 1 DA 5 PRO D 376 ALA D 382 0 SHEET 2 DA 5 ASN D 449 CYS D 455 -1 O VAL D 450 N LEU D 381 SHEET 3 DA 5 VAL D 422 VAL D 426 -1 O VAL D 422 N CYS D 455 SHEET 4 DA 5 SER D 401 ILE D 403 -1 O SER D 401 N ILE D 423 SHEET 5 DA 5 LEU D 392 ALA D 394 -1 O ASN D 393 N PHE D 402 SHEET 1 DB 4 PRO D 376 ALA D 382 0 SHEET 2 DB 4 ASN D 449 CYS D 455 -1 O VAL D 450 N LEU D 381 SHEET 3 DB 4 VAL D 422 VAL D 426 -1 O VAL D 422 N CYS D 455 SHEET 4 DB 4 VAL D 429 ASN D 430 -1 O VAL D 429 N VAL D 426 CRYST1 99.327 99.327 97.114 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010068 0.005813 0.000000 0.00000 SCALE2 0.000000 0.011625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010297 0.00000