PDB Short entry for 2VUX HEADER OXIDOREDUCTASE 31-MAY-08 2VUX TITLE HUMAN RIBONUCLEOTIDE REDUCTASE, SUBUNIT M2 B COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 20-322; COMPND 5 SYNONYM: TP53-INDUCIBLE RIBONUCLEOTIDE REDUCTASE M2 B, P53-INDUCIBLE COMPND 6 RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT 2-LIKE PROTEIN, P53R2; COMPND 7 EC: 1.17.4.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS DNA REPLICATION, DE NOVO PATHWAY, NUCLEOTIDE METABOLISM, KEYWDS 2 RIBONUCLEOTIDE REDUCTASE, RNR, IRON, P53R2, CASP8, NUCLEUS, METAL- KEYWDS 3 BINDING, OXIDOREDUCTASE, DNA DAMAGE, DNA REPAIR, IRON BINDING, KEYWDS 4 SUBUNIT M2 B EXPDTA X-RAY DIFFRACTION AUTHOR M.WELIN,M.MOCHE,J.ANDERSSON,C.H.ARROWSMITH,H.BERGLUND,R.D.BUSAM, AUTHOR 2 R.COLLINS,L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND, AUTHOR 3 M.HAMMARSTROM,M.D.HERMAN,A.JOHANSSON,I.JOHANSSON,A.KALLAS, AUTHOR 4 T.KARLBERG,T.KOTENYOVA,L.LEHTIO,M.E.NILSSON,T.NYMAN,C.PERSSON, AUTHOR 5 J.SAGEMARK,H.SCHUELER,L.SVENSSON,A.G.THORSELL,L.TRESAUGUES,S.VAN DEN AUTHOR 6 BERG,J.WEIGELT,M.WIKSTROM,P.NORDLUND,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 7 (SGC) REVDAT 4 13-DEC-23 2VUX 1 LINK REVDAT 3 13-JUL-11 2VUX 1 VERSN REVDAT 2 24-FEB-09 2VUX 1 VERSN REVDAT 1 15-JUL-08 2VUX 0 JRNL AUTH M.WELIN,M.MOCHE,C.H.ARROWSMITH,H.BERGLUND,R.D.BUSAM, JRNL AUTH 2 R.COLLINS,L.G.DAHLGREN,A.M.EDWARDS,S.FLODIN,A.FLORES, JRNL AUTH 3 S.GRASLUND,M.HAMMARSTROM,M.D.HERMAN,A.JOHANSSON,I.JOHANSSON, JRNL AUTH 4 A.KALLAS,T.KARLBERG,T.KOTENYOVA,L.LEHTIO,M.E.NILSSON, JRNL AUTH 5 T.NYMAN,C.PERSSON,J.SAGEMARK,H.SCHUELER,L.SVENSSON, JRNL AUTH 6 A.G.THORSELL,L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT, JRNL AUTH 7 M.WIKSTROM,P.NORDLUND JRNL TITL HUMAN RIBONUCLEOTIDE REDUCTASE, SUBUNIT M2 B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 21049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1831 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1530 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.662 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.338 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.263 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.141 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4471 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3125 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6028 ; 1.138 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7565 ; 0.837 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 519 ; 5.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;35.721 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 792 ;17.691 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;15.894 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 642 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4876 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 986 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1090 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3052 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2215 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2251 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 60 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 21 ; 0.282 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.120 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3409 ; 0.545 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4242 ; 0.641 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2228 ; 0.935 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1786 ; 1.445 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 312 REMARK 3 RESIDUE RANGE : A 1313 A 1313 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2122 -11.9514 -1.9935 REMARK 3 T TENSOR REMARK 3 T11: -0.1828 T22: -0.1948 REMARK 3 T33: -0.1372 T12: 0.0192 REMARK 3 T13: -0.0006 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.9447 L22: 1.5059 REMARK 3 L33: 3.4771 L12: -0.1064 REMARK 3 L13: -1.4145 L23: -0.6476 REMARK 3 S TENSOR REMARK 3 S11: 0.1161 S12: 0.1227 S13: 0.1610 REMARK 3 S21: -0.0331 S22: 0.0423 S23: 0.1474 REMARK 3 S31: -0.2728 S32: -0.2482 S33: -0.1584 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 31 B 314 REMARK 3 RESIDUE RANGE : B 1315 B 1315 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2762 -33.3256 -28.0706 REMARK 3 T TENSOR REMARK 3 T11: -0.1187 T22: -0.0344 REMARK 3 T33: -0.0767 T12: -0.0234 REMARK 3 T13: -0.0067 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 1.6998 L22: 1.8589 REMARK 3 L33: 3.5876 L12: 0.3178 REMARK 3 L13: -1.3522 L23: 0.6080 REMARK 3 S TENSOR REMARK 3 S11: -0.1000 S12: 0.5753 S13: 0.0061 REMARK 3 S21: -0.1419 S22: -0.0699 S23: 0.3523 REMARK 3 S31: 0.0671 S32: -0.7541 S33: 0.1699 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 38-42, 100-105 IN SUBUNIT A AND 38REMARK REMARK 4 REMARK 4 2VUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1290036449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SINGLE SILICON (111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.590 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.68 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2UW2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NACACODYLATE PH 6.5, 2.3M REMARK 280 AMMONIUM SULFATE, 0.2M SODIUM CHLORIDE. CHYMOTRYPSIN WAS ADDED REMARK 280 TO A RATIO CHYMOTRYPSIN:PROTEIN OF 1:100 PRIOR TO CRYSTALLISATION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.48000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.29000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.29000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 VAL A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 GLY A 10 REMARK 465 THR A 11 REMARK 465 GLU A 12 REMARK 465 ASN A 13 REMARK 465 LEU A 14 REMARK 465 TYR A 15 REMARK 465 PHE A 16 REMARK 465 GLN A 17 REMARK 465 SER A 18 REMARK 465 MET A 19 REMARK 465 SER A 20 REMARK 465 ASP A 21 REMARK 465 THR A 22 REMARK 465 ASN A 23 REMARK 465 GLU A 24 REMARK 465 SER A 25 REMARK 465 GLU A 26 REMARK 465 ILE A 27 REMARK 465 LYS A 28 REMARK 465 SER A 29 REMARK 465 SER A 38 REMARK 465 SER A 39 REMARK 465 ARG A 40 REMARK 465 ARG A 41 REMARK 465 PHE A 42 REMARK 465 ASP A 100 REMARK 465 GLY A 101 REMARK 465 ILE A 102 REMARK 465 VAL A 103 REMARK 465 ASN A 104 REMARK 465 GLU A 105 REMARK 465 GLU A 313 REMARK 465 ASN A 314 REMARK 465 ILE A 315 REMARK 465 SER A 316 REMARK 465 LEU A 317 REMARK 465 GLU A 318 REMARK 465 GLY A 319 REMARK 465 LYS A 320 REMARK 465 THR A 321 REMARK 465 ASN A 322 REMARK 465 MET B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 GLY B 6 REMARK 465 VAL B 7 REMARK 465 ASP B 8 REMARK 465 LEU B 9 REMARK 465 GLY B 10 REMARK 465 THR B 11 REMARK 465 GLU B 12 REMARK 465 ASN B 13 REMARK 465 LEU B 14 REMARK 465 TYR B 15 REMARK 465 PHE B 16 REMARK 465 GLN B 17 REMARK 465 SER B 18 REMARK 465 MET B 19 REMARK 465 SER B 20 REMARK 465 ASP B 21 REMARK 465 THR B 22 REMARK 465 ASN B 23 REMARK 465 GLU B 24 REMARK 465 SER B 25 REMARK 465 GLU B 26 REMARK 465 ILE B 27 REMARK 465 LYS B 28 REMARK 465 SER B 29 REMARK 465 ASN B 30 REMARK 465 SER B 38 REMARK 465 SER B 39 REMARK 465 ARG B 40 REMARK 465 ALA B 98 REMARK 465 SER B 99 REMARK 465 ASP B 100 REMARK 465 GLY B 101 REMARK 465 ILE B 102 REMARK 465 VAL B 103 REMARK 465 GLU B 153 REMARK 465 PHE B 154 REMARK 465 LEU B 155 REMARK 465 PHE B 156 REMARK 465 ASN B 157 REMARK 465 ALA B 158 REMARK 465 ILE B 159 REMARK 465 GLU B 160 REMARK 465 THR B 161 REMARK 465 MET B 162 REMARK 465 ALA B 172 REMARK 465 LEU B 173 REMARK 465 ARG B 174 REMARK 465 TRP B 175 REMARK 465 ILE B 176 REMARK 465 ALA B 177 REMARK 465 ASP B 178 REMARK 465 ARG B 179 REMARK 465 LYS B 180 REMARK 465 SER B 181 REMARK 465 ILE B 315 REMARK 465 SER B 316 REMARK 465 LEU B 317 REMARK 465 GLU B 318 REMARK 465 GLY B 319 REMARK 465 LYS B 320 REMARK 465 THR B 321 REMARK 465 ASN B 322 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 163 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 49 79.40 -116.79 REMARK 500 ARG A 179 -0.38 65.22 REMARK 500 PHE A 198 -1.78 60.92 REMARK 500 TYR B 49 74.29 -114.73 REMARK 500 ARG B 110 -52.19 176.69 REMARK 500 ILE B 146 69.91 -113.63 REMARK 500 TYR B 164 -52.93 -29.54 REMARK 500 ALA B 169 -73.11 -36.10 REMARK 500 PHE B 198 -0.98 66.02 REMARK 500 THR B 267 -32.14 -133.69 REMARK 500 GLU B 268 -80.07 -91.52 REMARK 500 LEU B 270 71.08 -150.44 REMARK 500 LEU B 297 0.28 -69.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 179 LYS A 180 140.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B1315 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 131 OE1 REMARK 620 2 GLU B 228 OE2 158.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A1313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B1315 REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN WAS CO-CRYSTALLIZED IN THE PRESENCE OF REMARK 999 CHYMOTRYPSIN. DBREF 2VUX A -3 19 PDB 2VUX 2VUX -3 19 DBREF 2VUX A 20 322 UNP Q7LG56 RIR2B_HUMAN 20 322 DBREF 2VUX B -3 19 PDB 2VUX 2VUX -3 19 DBREF 2VUX B 20 322 UNP Q7LG56 RIR2B_HUMAN 20 322 SEQRES 1 A 326 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 326 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER ASP THR SEQRES 3 A 326 ASN GLU SER GLU ILE LYS SER ASN GLU GLU PRO LEU LEU SEQRES 4 A 326 ARG LYS SER SER ARG ARG PHE VAL ILE PHE PRO ILE GLN SEQRES 5 A 326 TYR PRO ASP ILE TRP LYS MET TYR LYS GLN ALA GLN ALA SEQRES 6 A 326 SER PHE TRP THR ALA GLU GLU VAL ASP LEU SER LYS ASP SEQRES 7 A 326 LEU PRO HIS TRP ASN LYS LEU LYS ALA ASP GLU LYS TYR SEQRES 8 A 326 PHE ILE SER HIS ILE LEU ALA PHE PHE ALA ALA SER ASP SEQRES 9 A 326 GLY ILE VAL ASN GLU ASN LEU VAL GLU ARG PHE SER GLN SEQRES 10 A 326 GLU VAL GLN VAL PRO GLU ALA ARG CYS PHE TYR GLY PHE SEQRES 11 A 326 GLN ILE LEU ILE GLU ASN VAL HIS SER GLU MET TYR SER SEQRES 12 A 326 LEU LEU ILE ASP THR TYR ILE ARG ASP PRO LYS LYS ARG SEQRES 13 A 326 GLU PHE LEU PHE ASN ALA ILE GLU THR MET PRO TYR VAL SEQRES 14 A 326 LYS LYS LYS ALA ASP TRP ALA LEU ARG TRP ILE ALA ASP SEQRES 15 A 326 ARG LYS SER THR PHE GLY GLU ARG VAL VAL ALA PHE ALA SEQRES 16 A 326 ALA VAL GLU GLY VAL PHE PHE SER GLY SER PHE ALA ALA SEQRES 17 A 326 ILE PHE TRP LEU LYS LYS ARG GLY LEU MET PRO GLY LEU SEQRES 18 A 326 THR PHE SER ASN GLU LEU ILE SER ARG ASP GLU GLY LEU SEQRES 19 A 326 HIS CYS ASP PHE ALA CYS LEU MET PHE GLN TYR LEU VAL SEQRES 20 A 326 ASN LYS PRO SER GLU GLU ARG VAL ARG GLU ILE ILE VAL SEQRES 21 A 326 ASP ALA VAL LYS ILE GLU GLN GLU PHE LEU THR GLU ALA SEQRES 22 A 326 LEU PRO VAL GLY LEU ILE GLY MET ASN CYS ILE LEU MET SEQRES 23 A 326 LYS GLN TYR ILE GLU PHE VAL ALA ASP ARG LEU LEU VAL SEQRES 24 A 326 GLU LEU GLY PHE SER LYS VAL PHE GLN ALA GLU ASN PRO SEQRES 25 A 326 PHE ASP PHE MET GLU ASN ILE SER LEU GLU GLY LYS THR SEQRES 26 A 326 ASN SEQRES 1 B 326 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 326 GLY THR GLU ASN LEU TYR PHE GLN SER MET SER ASP THR SEQRES 3 B 326 ASN GLU SER GLU ILE LYS SER ASN GLU GLU PRO LEU LEU SEQRES 4 B 326 ARG LYS SER SER ARG ARG PHE VAL ILE PHE PRO ILE GLN SEQRES 5 B 326 TYR PRO ASP ILE TRP LYS MET TYR LYS GLN ALA GLN ALA SEQRES 6 B 326 SER PHE TRP THR ALA GLU GLU VAL ASP LEU SER LYS ASP SEQRES 7 B 326 LEU PRO HIS TRP ASN LYS LEU LYS ALA ASP GLU LYS TYR SEQRES 8 B 326 PHE ILE SER HIS ILE LEU ALA PHE PHE ALA ALA SER ASP SEQRES 9 B 326 GLY ILE VAL ASN GLU ASN LEU VAL GLU ARG PHE SER GLN SEQRES 10 B 326 GLU VAL GLN VAL PRO GLU ALA ARG CYS PHE TYR GLY PHE SEQRES 11 B 326 GLN ILE LEU ILE GLU ASN VAL HIS SER GLU MET TYR SER SEQRES 12 B 326 LEU LEU ILE ASP THR TYR ILE ARG ASP PRO LYS LYS ARG SEQRES 13 B 326 GLU PHE LEU PHE ASN ALA ILE GLU THR MET PRO TYR VAL SEQRES 14 B 326 LYS LYS LYS ALA ASP TRP ALA LEU ARG TRP ILE ALA ASP SEQRES 15 B 326 ARG LYS SER THR PHE GLY GLU ARG VAL VAL ALA PHE ALA SEQRES 16 B 326 ALA VAL GLU GLY VAL PHE PHE SER GLY SER PHE ALA ALA SEQRES 17 B 326 ILE PHE TRP LEU LYS LYS ARG GLY LEU MET PRO GLY LEU SEQRES 18 B 326 THR PHE SER ASN GLU LEU ILE SER ARG ASP GLU GLY LEU SEQRES 19 B 326 HIS CYS ASP PHE ALA CYS LEU MET PHE GLN TYR LEU VAL SEQRES 20 B 326 ASN LYS PRO SER GLU GLU ARG VAL ARG GLU ILE ILE VAL SEQRES 21 B 326 ASP ALA VAL LYS ILE GLU GLN GLU PHE LEU THR GLU ALA SEQRES 22 B 326 LEU PRO VAL GLY LEU ILE GLY MET ASN CYS ILE LEU MET SEQRES 23 B 326 LYS GLN TYR ILE GLU PHE VAL ALA ASP ARG LEU LEU VAL SEQRES 24 B 326 GLU LEU GLY PHE SER LYS VAL PHE GLN ALA GLU ASN PRO SEQRES 25 B 326 PHE ASP PHE MET GLU ASN ILE SER LEU GLU GLY LYS THR SEQRES 26 B 326 ASN HET FE A1313 1 HET FE B1315 1 HETNAM FE FE (III) ION FORMUL 3 FE 2(FE 3+) HELIX 1 1 TYR A 49 SER A 62 1 14 HELIX 2 2 THR A 65 VAL A 69 5 5 HELIX 3 3 ASP A 74 LEU A 81 1 8 HELIX 4 4 LYS A 82 SER A 99 1 18 HELIX 5 5 ASN A 106 VAL A 115 1 10 HELIX 6 6 VAL A 117 ILE A 146 1 30 HELIX 7 7 ASP A 148 MET A 162 1 15 HELIX 8 8 MET A 162 ILE A 176 1 15 HELIX 9 9 THR A 182 VAL A 196 1 15 HELIX 10 10 PHE A 198 ARG A 211 1 14 HELIX 11 11 MET A 214 GLN A 240 1 27 HELIX 12 12 SER A 247 GLU A 268 1 22 HELIX 13 13 PRO A 271 GLY A 276 5 6 HELIX 14 14 ASN A 278 LEU A 297 1 20 HELIX 15 15 GLU B 32 ARG B 36 5 5 HELIX 16 16 TYR B 49 SER B 62 1 14 HELIX 17 17 THR B 65 VAL B 69 5 5 HELIX 18 18 LYS B 73 LEU B 81 1 9 HELIX 19 19 LYS B 82 ALA B 97 1 16 HELIX 20 20 LEU B 107 VAL B 115 1 9 HELIX 21 21 VAL B 117 ILE B 146 1 30 HELIX 22 22 ASP B 148 ARG B 152 5 5 HELIX 23 23 PRO B 163 TRP B 171 1 9 HELIX 24 24 THR B 182 VAL B 196 1 15 HELIX 25 25 PHE B 198 ARG B 211 1 14 HELIX 26 26 MET B 214 TYR B 241 1 28 HELIX 27 27 SER B 247 GLU B 268 1 22 HELIX 28 28 PRO B 271 GLY B 276 5 6 HELIX 29 29 ASN B 278 LEU B 297 1 20 HELIX 30 30 PHE B 309 GLU B 313 5 5 LINK OE2 GLU A 194 FE FE A1313 1555 1555 2.43 LINK OE1 GLU B 131 FE FE B1315 1555 1555 2.49 LINK OE2 GLU B 228 FE FE B1315 1555 1555 1.99 CISPEP 1 PHE A 45 PRO A 46 0 -26.63 CISPEP 2 PHE B 45 PRO B 46 0 7.59 SITE 1 AC1 4 GLU A 131 GLU A 194 GLU A 228 HIS A 231 SITE 1 AC2 4 GLU B 131 GLU B 194 GLU B 228 HIS B 231 CRYST1 68.960 99.470 132.580 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014501 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007543 0.00000 MTRIX1 1 0.592200 -0.281800 0.754900 16.23000 1 MTRIX2 1 -0.274600 -0.951400 -0.139800 -38.42000 1 MTRIX3 1 0.757500 -0.124500 -0.640800 -48.70000 1