PDB Short entry for 2VWK
HEADER    DNA REPLICATION                         26-JUN-08   2VWK              
TITLE     URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY X-RAY      
TITLE    2 CRYSTALLOGRAPHY. V93Q POLYMERASE VARIANT                             
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE;                                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: TGO POLYMERASE DNA COMPLEX, TO POL;                         
COMPND   5 EC: 2.7.7.7;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: THERMOCOCCUS GORGONARIUS;                       
SOURCE   3 ORGANISM_TAXID: 71997;                                               
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: PET 17B                                   
KEYWDS    DNA REPLICATION, MULTIFUNCTIONAL ENZYME, NUCLEOTIDYLTRANSFERASE, DNA- 
KEYWDS   2 DIRECTED DNA POLYMERASE, TRANSFERASE, EXONUCLEASE, DNA-BINDING, DNA  
KEYWDS   3 POLYMERASE, URACIL, ARCHAEA, NUCLEASE, HYDROLASE, DNA REPAIR         
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    S.J.FIRBANK,J.WARDLE,P.HESLOP,R.J.LEWIS,B.A.CONNOLLY                  
REVDAT   4   13-DEC-23 2VWK    1       REMARK                                   
REVDAT   3   24-FEB-09 2VWK    1       VERSN                                    
REVDAT   2   12-AUG-08 2VWK    1       JRNL                                     
REVDAT   1   22-JUL-08 2VWK    0                                                
JRNL        AUTH   S.J.FIRBANK,J.WARDLE,P.HESLOP,R.J.LEWIS,B.A.CONNOLLY         
JRNL        TITL   URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY   
JRNL        TITL 2 X-RAY CRYSTALLOGRAPHY.                                       
JRNL        REF    J.MOL.BIOL.                   V. 381   529 2008              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   18614176                                                     
JRNL        DOI    10.1016/J.JMB.2008.06.004                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.60 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.2.0019                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 51.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 100.0                          
REMARK   3   NUMBER OF REFLECTIONS             : 28433                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.220                           
REMARK   3   R VALUE            (WORKING SET) : 0.217                           
REMARK   3   FREE R VALUE                     : 0.275                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1520                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.60                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.67                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2110                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2610                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 110                          
REMARK   3   BIN FREE R VALUE                    : 0.3230                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 6083                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 36                                      
REMARK   3   SOLVENT ATOMS            : 57                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 32.50                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.738         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.340         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.248         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.314        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.912                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.870                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  6254 ; 0.009 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  8487 ; 1.118 ; 1.975       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   772 ; 5.731 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   277 ;32.145 ;23.646       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):  1043 ;17.150 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    39 ;17.487 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   928 ; 0.080 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  4735 ; 0.003 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  2637 ; 0.196 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  4316 ; 0.304 ; 0.200       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   225 ; 0.145 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    84 ; 0.182 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):     6 ; 0.180 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  3851 ; 0.487 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  6195 ; 0.934 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  2492 ; 1.243 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  2292 ; 2.115 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : BABINET MODEL WITH MASK                              
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS.                                                          
REMARK   4                                                                      
REMARK   4 2VWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUN-08.                  
REMARK 100 THE DEPOSITION ID IS D_1290036701.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : NULL                               
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.5                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : ID14-1                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.934                              
REMARK 200  MONOCHROMATOR                  : DIAMOND                            
REMARK 200  OPTICS                         : DIAMOND AND GE(220)                
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC CCD                           
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 29945                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.600                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 62.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY                : 5.900                              
REMARK 200  R MERGE                    (I) : 0.11000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 15.0000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.76                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : 6.00                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.38000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 4.400                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: NULL                                                  
REMARK 200 STARTING MODEL: PDB ENTRY 1TGO                                       
REMARK 200                                                                      
REMARK 200 REMARK: ESSENTIALLY ISOMORPHOUS WITH 1TGO, THEREFORE 1TGO USED AS    
REMARK 200  STARTING MODEL FOR RIGID BODY REFINEMENT.                           
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 54.80                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9M AMMONIUM SULPHATE, 100MM BIS        
REMARK 280  -TRIS, PH 5.5                                                       
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       29.21600            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       77.20400            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       52.37350            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       77.20400            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       29.21600            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       52.37350            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PQS                                                   
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 400                                                                      
REMARK 400 COMPOUND                                                             
REMARK 400 ENGINEERED RESIDUE IN CHAIN X, VAL 93 TO GLN                         
REMARK 400 ENGINEERED RESIDUE IN CHAIN X, ASP 215 TO ALA                        
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A  21    CG   CD   CE   NZ                                   
REMARK 470     LYS A  53    CE   NZ                                             
REMARK 470     ARG A  64    NE   CZ   NH1  NH2                                  
REMARK 470     ARG A  78    NE   CZ   NH1  NH2                                  
REMARK 470     ARG A  97    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS A 101    CG   CD   CE   NZ                                   
REMARK 470     GLU A 134    CD   OE1  OE2                                       
REMARK 470     LYS A 136    CD   CE   NZ                                        
REMARK 470     LEU A 145    CG   CD1  CD2                                       
REMARK 470     GLU A 148    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 151    CG   CD   CE   NZ                                   
REMARK 470     GLU A 154    CD   OE1  OE2                                       
REMARK 470     GLU A 166    CD   OE1  OE2                                       
REMARK 470     LYS A 196    CE   NZ                                             
REMARK 470     LYS A 199    CE   NZ                                             
REMARK 470     LYS A 220    CG   CD   CE   NZ                                   
REMARK 470     LYS A 221    CE   NZ                                             
REMARK 470     LYS A 225    CE   NZ                                             
REMARK 470     LYS A 229    CD   CE   NZ                                        
REMARK 470     LYS A 240    CD   CE   NZ                                        
REMARK 470     GLN A 242    CD   OE1  NE2                                       
REMARK 470     ARG A 243    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     MET A 244    CG   SD   CE                                        
REMARK 470     ASP A 246    CG   OD1  OD2                                       
REMARK 470     ARG A 266    NE   CZ   NH1  NH2                                  
REMARK 470     ILE A 268    CG1  CG2  CD1                                       
REMARK 470     ASN A 269    CG   OD1  ND2                                       
REMARK 470     THR A 272    CB   OG1  CG2                                       
REMARK 470     GLU A 280    CG   CD   OE1  OE2                                  
REMARK 470     GLN A 285    CG   CD   OE1  NE2                                  
REMARK 470     LYS A 287    CG   CD   CE   NZ                                   
REMARK 470     GLU A 288    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 289    CG   CD   CE   NZ                                   
REMARK 470     TYR A 291    CG   CD1  CD2  CE1  CE2  CZ   OH                    
REMARK 470     TRP A 299    CD1  CD2  NE1  CE2  CE3  CZ2  CZ3                   
REMARK 470     TRP A 299    CH2                                                 
REMARK 470     GLU A 300    CG   CD   OE1  OE2                                  
REMARK 470     GLU A 303    CG   CD   OE1  OE2                                  
REMARK 470     ARG A 307    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     ARG A 310    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS A 317    CD   CE   NZ                                        
REMARK 470     LYS A 324    CD   CE   NZ                                        
REMARK 470     GLU A 374    CG   CD   OE1  OE2                                  
REMARK 470     ARG A 375    NE   CZ   NH1  NH2                                  
REMARK 470     ARG A 379    CZ   NH1  NH2                                       
REMARK 470     GLU A 382    CD   OE1  OE2                                       
REMARK 470     ARG A 425    CD   NE   CZ   NH1  NH2                             
REMARK 470     GLN A 461    CD   OE1  NE2                                       
REMARK 470     LYS A 462    CE   NZ                                             
REMARK 470     GLU A 475    CG   CD   OE1  OE2                                  
REMARK 470     LYS A 477    CE   NZ                                             
REMARK 470     ARG A 484    CD   NE   CZ   NH1  NH2                             
REMARK 470     LYS A 501    CD   CE   NZ                                        
REMARK 470     ARG A 526    NE   CZ   NH1  NH2                                  
REMARK 470     LYS A 531    CD   CE   NZ                                        
REMARK 470     LYS A 535    NZ                                                  
REMARK 470     ARG A 613    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     GLU A 621    CD   OE1  OE2                                       
REMARK 470     LYS A 652    CE   NZ                                             
REMARK 470     GLU A 658    CG   CD   OE1  OE2                                  
REMARK 470     GLN A 665    CG   CD   OE1  NE2                                  
REMARK 470     LYS A 671    CD   CE   NZ                                        
REMARK 470     LYS A 674    CG   CD   CE   NZ                                   
REMARK 470     LYS A 692    CD   CE   NZ                                        
REMARK 470     LYS A 724    CG   CD   CE   NZ                                   
REMARK 470     LYS A 726    CD   CE   NZ                                        
REMARK 470     ARG A 746    CD   NE   CZ   NH1  NH2                             
REMARK 470     LYS A 752    CD   CE   NZ                                        
REMARK 470     GLU A 753    CG   CD   OE1  OE2                                  
REMARK 470     GLN A 758    CG   CD   OE1  NE2                                  
REMARK 470     LYS A 759    CG   CD   CE   NZ                                   
REMARK 470     ARG A 761    CG   CD   NE   CZ   NH1  NH2                        
REMARK 470     LYS A 770    CG   CD   CE   NZ                                   
REMARK 470     LYS A 772    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLU A 133      120.95     -9.06                                   
REMARK 500    PHE A 214      -84.12   -115.83                                   
REMARK 500    ARG A 247     -153.72    -92.92                                   
REMARK 500    THR A 267      -86.90    -85.10                                   
REMARK 500    PRO A 271      -85.66    -70.91                                   
REMARK 500    TYR A 273       59.53    -97.49                                   
REMARK 500    PHE A 283      -30.84   -136.10                                   
REMARK 500    GLU A 288       61.62     66.95                                   
REMARK 500    GLU A 382       45.12    -83.17                                   
REMARK 500    ASN A 424       57.32     29.74                                   
REMARK 500    GLN A 436      -66.29     66.74                                   
REMARK 500    TRP A 504       34.72    -86.65                                   
REMARK 500    CYS A 506       92.17   -164.66                                   
REMARK 500    LYS A 591      112.86    -38.19                                   
REMARK 500    LYS A 724       -6.50     83.69                                   
REMARK 500    GLN A 736      -65.88   -101.85                                   
REMARK 500    THR A 760       54.59   -151.26                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A1774                  
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1775                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1776                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1777                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1778                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC6                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1779                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC7                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1780                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC8                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1781                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1WN7   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF ARCHAEAL FAMILY B DNA POLYMERASE MUTANT         
REMARK 900 RELATED ID: 1TGO   RELATED DB: PDB                                   
REMARK 900 THERMOSTABLE B TYPE DEOXYRIBONUCLEIC ACID POLYMERASE FROM            
REMARK 900 THERMOCOCCUS GORGONARIUS                                             
REMARK 900 RELATED ID: 2VWJ   RELATED DB: PDB                                   
REMARK 900 URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY X-RAY     
REMARK 900 CRYSTALLOGRAPHY.                                                     
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 V93 MUTATED TO GLUTAMINE - A MUTATION WHICH PREVENTS THE             
REMARK 999 RECOGNITION OF URACIL BY THE POLYMERASE. MUTATION OF D215            
REMARK 999 TO ALANINE TO REMOVE EXONUCLEASE ACTIVITY.                           
DBREF  2VWK A    1   773  UNP    P56689   DPOL_THEGO       1    773             
SEQADV 2VWK GLN A   93  UNP  P56689    VAL    93 ENGINEERED MUTATION            
SEQADV 2VWK LYS A  151  UNP  P56689    GLU   151 CONFLICT                       
SEQADV 2VWK ARG A  174  UNP  P56689    LYS   174 CONFLICT                       
SEQADV 2VWK ALA A  215  UNP  P56689    ASP   215 ENGINEERED MUTATION            
SEQRES   1 A  773  MET ILE LEU ASP THR ASP TYR ILE THR GLU ASP GLY LYS          
SEQRES   2 A  773  PRO VAL ILE ARG ILE PHE LYS LYS GLU ASN GLY GLU PHE          
SEQRES   3 A  773  LYS ILE ASP TYR ASP ARG ASN PHE GLU PRO TYR ILE TYR          
SEQRES   4 A  773  ALA LEU LEU LYS ASP ASP SER ALA ILE GLU ASP VAL LYS          
SEQRES   5 A  773  LYS ILE THR ALA GLU ARG HIS GLY THR THR VAL ARG VAL          
SEQRES   6 A  773  VAL ARG ALA GLU LYS VAL LYS LYS LYS PHE LEU GLY ARG          
SEQRES   7 A  773  PRO ILE GLU VAL TRP LYS LEU TYR PHE THR HIS PRO GLN          
SEQRES   8 A  773  ASP GLN PRO ALA ILE ARG ASP LYS ILE LYS GLU HIS PRO          
SEQRES   9 A  773  ALA VAL VAL ASP ILE TYR GLU TYR ASP ILE PRO PHE ALA          
SEQRES  10 A  773  LYS ARG TYR LEU ILE ASP LYS GLY LEU ILE PRO MET GLU          
SEQRES  11 A  773  GLY ASP GLU GLU LEU LYS MET LEU ALA PHE ASP ILE GLU          
SEQRES  12 A  773  THR LEU TYR HIS GLU GLY GLU LYS PHE ALA GLU GLY PRO          
SEQRES  13 A  773  ILE LEU MET ILE SER TYR ALA ASP GLU GLU GLY ALA ARG          
SEQRES  14 A  773  VAL ILE THR TRP ARG ASN ILE ASP LEU PRO TYR VAL ASP          
SEQRES  15 A  773  VAL VAL SER THR GLU LYS GLU MET ILE LYS ARG PHE LEU          
SEQRES  16 A  773  LYS VAL VAL LYS GLU LYS ASP PRO ASP VAL LEU ILE THR          
SEQRES  17 A  773  TYR ASN GLY ASP ASN PHE ALA PHE ALA TYR LEU LYS LYS          
SEQRES  18 A  773  ARG SER GLU LYS LEU GLY VAL LYS PHE ILE LEU GLY ARG          
SEQRES  19 A  773  GLU GLY SER GLU PRO LYS ILE GLN ARG MET GLY ASP ARG          
SEQRES  20 A  773  PHE ALA VAL GLU VAL LYS GLY ARG ILE HIS PHE ASP LEU          
SEQRES  21 A  773  TYR PRO VAL ILE ARG ARG THR ILE ASN LEU PRO THR TYR          
SEQRES  22 A  773  THR LEU GLU ALA VAL TYR GLU ALA ILE PHE GLY GLN PRO          
SEQRES  23 A  773  LYS GLU LYS VAL TYR ALA GLU GLU ILE ALA GLN ALA TRP          
SEQRES  24 A  773  GLU THR GLY GLU GLY LEU GLU ARG VAL ALA ARG TYR SER          
SEQRES  25 A  773  MET GLU ASP ALA LYS VAL THR TYR GLU LEU GLY LYS GLU          
SEQRES  26 A  773  PHE PHE PRO MET GLU ALA GLN LEU SER ARG LEU VAL GLY          
SEQRES  27 A  773  GLN SER LEU TRP ASP VAL SER ARG SER SER THR GLY ASN          
SEQRES  28 A  773  LEU VAL GLU TRP PHE LEU LEU ARG LYS ALA TYR GLU ARG          
SEQRES  29 A  773  ASN GLU LEU ALA PRO ASN LYS PRO ASP GLU ARG GLU LEU          
SEQRES  30 A  773  ALA ARG ARG ARG GLU SER TYR ALA GLY GLY TYR VAL LYS          
SEQRES  31 A  773  GLU PRO GLU ARG GLY LEU TRP GLU ASN ILE VAL TYR LEU          
SEQRES  32 A  773  ASP PHE ARG SER LEU TYR PRO SER ILE ILE ILE THR HIS          
SEQRES  33 A  773  ASN VAL SER PRO ASP THR LEU ASN ARG GLU GLY CYS GLU          
SEQRES  34 A  773  GLU TYR ASP VAL ALA PRO GLN VAL GLY HIS LYS PHE CYS          
SEQRES  35 A  773  LYS ASP PHE PRO GLY PHE ILE PRO SER LEU LEU GLY ASP          
SEQRES  36 A  773  LEU LEU GLU GLU ARG GLN LYS VAL LYS LYS LYS MET LYS          
SEQRES  37 A  773  ALA THR ILE ASP PRO ILE GLU LYS LYS LEU LEU ASP TYR          
SEQRES  38 A  773  ARG GLN ARG ALA ILE LYS ILE LEU ALA ASN SER PHE TYR          
SEQRES  39 A  773  GLY TYR TYR GLY TYR ALA LYS ALA ARG TRP TYR CYS LYS          
SEQRES  40 A  773  GLU CYS ALA GLU SER VAL THR ALA TRP GLY ARG GLN TYR          
SEQRES  41 A  773  ILE GLU THR THR ILE ARG GLU ILE GLU GLU LYS PHE GLY          
SEQRES  42 A  773  PHE LYS VAL LEU TYR ALA ASP THR ASP GLY PHE PHE ALA          
SEQRES  43 A  773  THR ILE PRO GLY ALA ASP ALA GLU THR VAL LYS LYS LYS          
SEQRES  44 A  773  ALA LYS GLU PHE LEU ASP TYR ILE ASN ALA LYS LEU PRO          
SEQRES  45 A  773  GLY LEU LEU GLU LEU GLU TYR GLU GLY PHE TYR LYS ARG          
SEQRES  46 A  773  GLY PHE PHE VAL THR LYS LYS LYS TYR ALA VAL ILE ASP          
SEQRES  47 A  773  GLU GLU ASP LYS ILE THR THR ARG GLY LEU GLU ILE VAL          
SEQRES  48 A  773  ARG ARG ASP TRP SER GLU ILE ALA LYS GLU THR GLN ALA          
SEQRES  49 A  773  ARG VAL LEU GLU ALA ILE LEU LYS HIS GLY ASP VAL GLU          
SEQRES  50 A  773  GLU ALA VAL ARG ILE VAL LYS GLU VAL THR GLU LYS LEU          
SEQRES  51 A  773  SER LYS TYR GLU VAL PRO PRO GLU LYS LEU VAL ILE TYR          
SEQRES  52 A  773  GLU GLN ILE THR ARG ASP LEU LYS ASP TYR LYS ALA THR          
SEQRES  53 A  773  GLY PRO HIS VAL ALA VAL ALA LYS ARG LEU ALA ALA ARG          
SEQRES  54 A  773  GLY ILE LYS ILE ARG PRO GLY THR VAL ILE SER TYR ILE          
SEQRES  55 A  773  VAL LEU LYS GLY SER GLY ARG ILE GLY ASP ARG ALA ILE          
SEQRES  56 A  773  PRO PHE ASP GLU PHE ASP PRO ALA LYS HIS LYS TYR ASP          
SEQRES  57 A  773  ALA GLU TYR TYR ILE GLU ASN GLN VAL LEU PRO ALA VAL          
SEQRES  58 A  773  GLU ARG ILE LEU ARG ALA PHE GLY TYR ARG LYS GLU ASP          
SEQRES  59 A  773  LEU ARG TYR GLN LYS THR ARG GLN VAL GLY LEU GLY ALA          
SEQRES  60 A  773  TRP LEU LYS PRO LYS THR                                      
HET     NA  A1774       1                                                       
HET    SO4  A1775       5                                                       
HET    SO4  A1776       5                                                       
HET    SO4  A1777       5                                                       
HET    SO4  A1778       5                                                       
HET    SO4  A1779       5                                                       
HET    SO4  A1780       5                                                       
HET    SO4  A1781       5                                                       
HETNAM      NA SODIUM ION                                                       
HETNAM     SO4 SULFATE ION                                                      
FORMUL   2   NA    NA 1+                                                        
FORMUL   3  SO4    7(O4 S 2-)                                                   
FORMUL  10  HOH   *57(H2 O)                                                     
HELIX    1   1 ASP A   44  SER A   46  5                                   3    
HELIX    2   2 ALA A   47  LYS A   52  1                                   6    
HELIX    3   3 GLN A   91  GLU A  102  1                                  12    
HELIX    4   4 PRO A  115  GLY A  125  1                                  11    
HELIX    5   5 THR A  186  ASP A  202  1                                  17    
HELIX    6   6 PHE A  214  GLY A  227  1                                  14    
HELIX    7   7 LEU A  260  ILE A  268  1                                   9    
HELIX    8   8 THR A  274  ILE A  282  1                                   9    
HELIX    9   9 TYR A  291  THR A  301  1                                  11    
HELIX   10  10 GLY A  304  GLY A  338  1                                  35    
HELIX   11  11 SER A  340  SER A  345  1                                   6    
HELIX   12  12 SER A  348  ARG A  364  1                                  17    
HELIX   13  13 ASP A  373  GLU A  382  1                                  10    
HELIX   14  14 SER A  407  HIS A  416  1                                  10    
HELIX   15  15 GLY A  447  THR A  470  1                                  24    
HELIX   16  16 ASP A  472  ASN A  491  1                                  20    
HELIX   17  17 SER A  492  GLY A  498  1                                   7    
HELIX   18  18 CYS A  506  LYS A  531  1                                  26    
HELIX   19  19 ASP A  552  ALA A  569  1                                  18    
HELIX   20  20 SER A  616  LYS A  632  1                                  17    
HELIX   21  21 ASP A  635  LYS A  652  1                                  18    
HELIX   22  22 PRO A  656  VAL A  661  5                                   6    
HELIX   23  23 ASP A  669  TYR A  673  5                                   5    
HELIX   24  24 PRO A  678  ALA A  688  1                                  11    
HELIX   25  25 ASP A  718  PHE A  720  5                                   3    
HELIX   26  26 ASP A  728  ASN A  735  1                                   8    
HELIX   27  27 GLN A  736  ALA A  747  1                                  12    
HELIX   28  28 ARG A  751  ARG A  756  5                                   6    
HELIX   29  29 LEU A  765  LYS A  770  1                                   6    
SHEET    1  AA 3 ILE A   2  GLU A  10  0                                        
SHEET    2  AA 3 LYS A  13  GLU A  22 -1  O  LYS A  13   N  GLU A  10           
SHEET    3  AA 3 GLU A  25  ASP A  31 -1  O  GLU A  25   N  GLU A  22           
SHEET    1  AB 4 ARG A  67  PHE A  75  0                                        
SHEET    2  AB 4 ARG A  78  TYR A  86 -1  O  ARG A  78   N  PHE A  75           
SHEET    3  AB 4 TYR A  37  LEU A  42 -1  O  ILE A  38   N  LEU A  85           
SHEET    4  AB 4 VAL A 106  TYR A 110 -1  N  VAL A 107   O  LEU A  41           
SHEET    1  AC 2 THR A  55  ARG A  58  0                                        
SHEET    2  AC 2 THR A  61  ARG A  64 -1  O  THR A  61   N  ARG A  58           
SHEET    1  AD 6 VAL A 181  VAL A 183  0                                        
SHEET    2  AD 6 ALA A 168  THR A 172  1  O  VAL A 170   N  ASP A 182           
SHEET    3  AD 6 ILE A 157  ALA A 163 -1  O  ILE A 160   N  ILE A 171           
SHEET    4  AD 6 MET A 137  THR A 144 -1  O  ALA A 139   N  ALA A 163           
SHEET    5  AD 6 VAL A 205  THR A 208  1  O  VAL A 205   N  LEU A 138           
SHEET    6  AD 6 ILE A 256  ASP A 259  1  O  ILE A 256   N  LEU A 206           
SHEET    1  AE 2 LYS A 240  MET A 244  0                                        
SHEET    2  AE 2 ARG A 247  GLU A 251 -1  O  ARG A 247   N  MET A 244           
SHEET    1  AF 6 LYS A 535  ASP A 540  0                                        
SHEET    2  AF 6 GLY A 543  THR A 547 -1  O  GLY A 543   N  ASP A 540           
SHEET    3  AF 6 LEU A 396  PHE A 405 -1  O  VAL A 401   N  ALA A 546           
SHEET    4  AF 6 LEU A 577  THR A 590 -1  O  GLU A 578   N  ASP A 404           
SHEET    5  AF 6 LYS A 593  ILE A 597 -1  O  LYS A 593   N  VAL A 589           
SHEET    6  AF 6 ILE A 603  ARG A 606 -1  O  THR A 604   N  VAL A 596           
SHEET    1  AG 2 TYR A 431  VAL A 433  0                                        
SHEET    2  AG 2 LYS A 440  CYS A 442 -1  O  PHE A 441   N  ASP A 432           
SHEET    1  AH 3 ILE A 662  GLN A 665  0                                        
SHEET    2  AH 3 VAL A 698  VAL A 703 -1  O  ILE A 699   N  GLU A 664           
SHEET    3  AH 3 ALA A 714  PRO A 716 -1  O  ILE A 715   N  ILE A 702           
SSBOND   1 CYS A  428    CYS A  442                          1555   1555  2.08  
SSBOND   2 CYS A  506    CYS A  509                          1555   1555  2.11  
LINK        NA    NA A1774                 O2  SO4 A1776     1555   1555  2.24  
SITE     1 AC1  3 ARG A 460  LYS A 487  SO4 A1776                               
SITE     1 AC2  2 ARG A 606  GLY A 607                                          
SITE     1 AC3  4 SER A 407  LYS A 487  ASN A 491   NA A1774                    
SITE     1 AC4  4 TYR A   7  PRO A 115  PHE A 116  HOH A2055                    
SITE     1 AC5  5 PRO A 435  GLN A 436  GLU A 628  LYS A 632                    
SITE     2 AC5  5 HIS A 633                                                     
SITE     1 AC6  3 SER A 348  TYR A 499  HOH A2056                               
SITE     1 AC7  4 GLY A 386  GLN A 436  LYS A 584  ARG A 585                    
SITE     1 AC8  6 GLY A 387  TYR A 388  THR A 541  LYS A 591                    
SITE     2 AC8  6 LYS A 592  HOH A2057                                          
CRYST1   58.432  104.747  154.408  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.017114  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.009547  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.006476        0.00000