PDB Short entry for 2VZD HEADER CELL ADHESION 31-JUL-08 2VZD TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL CALPONIN HOMOLOGY DOMAIN OF ALPHA TITLE 2 PARVIN IN COMPLEX WITH PAXILLIN LD1 MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-PARVIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL CALPONIN HOMOLOGY DOMAIN, RESIDUES 242-372; COMPND 5 SYNONYM: CALPONIN-LIKE INTEGRIN-LINKED KINASE-BINDING PROTEIN, CH- COMPND 6 ILKBP, MATRIX-REMODELING-ASSOCIATED PROTEIN 2, ACTOPAXIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PAXILLIN; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: PAXILLIN LD1 MOTIF, RESIDUES 1-20; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS CALPONIN HOMOLOGY DOMAIN, CELL MEMBRANE, CELL ADHESION, METAL- KEYWDS 2 BINDING, CYTOSKELETON, CELL JUNCTION, ACTIN-BINDING, PHOSPHOPROTEIN, KEYWDS 3 MEMBRANE, LD1 MOTIF, LIM DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR S.LORENZ,I.VAKONAKIS,E.D.LOWE,I.D.CAMPBELL,M.E.M.NOBLE,M.K.HOELLERER REVDAT 5 13-DEC-23 2VZD 1 REMARK REVDAT 4 30-MAY-12 2VZD 1 AUTHOR JRNL HETSYN REVDAT 3 13-JUL-11 2VZD 1 VERSN REVDAT 2 24-FEB-09 2VZD 1 VERSN REVDAT 1 28-OCT-08 2VZD 0 JRNL AUTH S.LORENZ,I.VAKONAKIS,E.D.LOWE,I.D.CAMPBELL,M.E.M.NOBLE, JRNL AUTH 2 M.K.HOELLERER JRNL TITL STRUCTURAL ANALYSIS OF THE INTERACTIONS BETWEEN PAXILLIN LD JRNL TITL 2 MOTIFS AND ALPHA-PARVIN JRNL REF STRUCTURE V. 16 1521 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18940607 JRNL DOI 10.1016/J.STR.2008.08.007 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 19208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1039 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1398 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2262 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.58000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : -1.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.294 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.368 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2931 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3991 ; 1.130 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 377 ; 7.964 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;32.885 ;25.203 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;13.908 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.106 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 449 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2227 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1513 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2005 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 161 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.178 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1811 ; 0.204 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2902 ; 0.361 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1237 ; 0.324 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1089 ; 0.484 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 315 B 372 4 REMARK 3 1 A 315 A 372 4 REMARK 3 2 B 247 B 303 4 REMARK 3 2 A 247 A 303 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 B (A): 1074 ; 0.29 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 1074 ; 0.12 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 247 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): -20.8200 11.9840 7.6230 REMARK 3 T TENSOR REMARK 3 T11: -0.1969 T22: -0.2055 REMARK 3 T33: -0.2064 T12: 0.0359 REMARK 3 T13: -0.0253 T23: -0.0396 REMARK 3 L TENSOR REMARK 3 L11: 2.8527 L22: 3.5887 REMARK 3 L33: 5.5678 L12: -0.5237 REMARK 3 L13: 0.1127 L23: 2.2901 REMARK 3 S TENSOR REMARK 3 S11: -0.0728 S12: 0.0640 S13: -0.0666 REMARK 3 S21: 0.2724 S22: 0.2757 S23: -0.4119 REMARK 3 S31: 0.1766 S32: 0.2352 S33: -0.2030 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 247 B 372 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8960 23.0890 39.5160 REMARK 3 T TENSOR REMARK 3 T11: -0.1790 T22: -0.1139 REMARK 3 T33: -0.1592 T12: -0.0143 REMARK 3 T13: -0.0238 T23: -0.1087 REMARK 3 L TENSOR REMARK 3 L11: 4.0503 L22: 3.7217 REMARK 3 L33: 4.1651 L12: -1.4974 REMARK 3 L13: -1.7327 L23: 1.2316 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.1242 S13: -0.0470 REMARK 3 S21: 0.0748 S22: -0.2356 S23: 0.2204 REMARK 3 S31: -0.2154 S32: -0.5433 S33: 0.1545 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 13 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9780 -0.4560 -4.0270 REMARK 3 T TENSOR REMARK 3 T11: -0.0353 T22: 0.0481 REMARK 3 T33: 0.2653 T12: 0.0644 REMARK 3 T13: -0.0084 T23: -0.1716 REMARK 3 L TENSOR REMARK 3 L11: 14.0660 L22: 14.2170 REMARK 3 L33: 40.4222 L12: -5.4903 REMARK 3 L13: 3.2439 L23: 3.7890 REMARK 3 S TENSOR REMARK 3 S11: -0.4740 S12: -0.3827 S13: 0.2911 REMARK 3 S21: 0.4295 S22: -0.0592 S23: -2.1408 REMARK 3 S31: 1.5140 S32: 1.4210 S33: 0.5333 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 13 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2800 36.4700 51.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.0583 T22: 0.0961 REMARK 3 T33: 0.0033 T12: 0.1210 REMARK 3 T13: 0.1869 T23: -0.0592 REMARK 3 L TENSOR REMARK 3 L11: 12.1175 L22: 34.8531 REMARK 3 L33: 18.6104 L12: 4.6880 REMARK 3 L13: 0.3204 L23: 0.9708 REMARK 3 S TENSOR REMARK 3 S11: 0.3347 S12: 1.4495 S13: 0.6232 REMARK 3 S21: -0.1876 S22: -0.4911 S23: 0.1073 REMARK 3 S31: -0.0192 S32: 0.3543 S33: 0.1564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1290037088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20260 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VZC REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 10000, 0.1M HEPES PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.56150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.75150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.56150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.75150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 242 REMARK 465 GLY A 243 REMARK 465 ARG A 244 REMARK 465 HIS A 245 REMARK 465 SER B 242 REMARK 465 GLY B 243 REMARK 465 ARG B 244 REMARK 465 HIS B 245 REMARK 465 GLU B 246 REMARK 465 MET C 1 REMARK 465 THR C 14 REMARK 465 THR C 15 REMARK 465 SER C 16 REMARK 465 HIS C 17 REMARK 465 ILE C 18 REMARK 465 SER C 19 REMARK 465 LYS C 20 REMARK 465 THR D 15 REMARK 465 SER D 16 REMARK 465 HIS D 17 REMARK 465 ILE D 18 REMARK 465 SER D 19 REMARK 465 LYS D 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR D 14 CB THR D 14 OG1 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1374 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1375 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1376 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 1373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1374 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1375 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1378 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1376 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1377 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1378 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VZI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL CALPONIN HOMOLOGY DOMAIN OF REMARK 900 ALPHA-PARVIN IN COMPLEX WITH PAXILLIN LD4 MOTIF REMARK 900 RELATED ID: 2VZG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL CALPONIN HOMOLOGY DOMAIN OF REMARK 900 ALPHA-PARVIN IN COMPLEX WITH PAXILLIN LD2 MOTIF REMARK 900 RELATED ID: 1KL0 RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF THE FAT DOMAIN OF FOCAL ADHESIONKINASE REMARK 900 COMPLEXED WITH PAXILLIN LD2 MOTIF REMARK 900 RELATED ID: 2VZC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL CALPONIN HOMOLOGY DOMAIN OF REMARK 900 ALPHA PARVIN REMARK 900 RELATED ID: 1KKY RELATED DB: PDB REMARK 900 THEORETICAL MODEL OF THE FAT DOMAIN OF FOCAL ADHESIONKINASE REMARK 900 COMPLEXED WITH PAXILLIN LD2 MOTIF DBREF 2VZD A 242 372 UNP Q9NVD7 PARVA_HUMAN 242 372 DBREF 2VZD B 242 372 UNP Q9NVD7 PARVA_HUMAN 242 372 DBREF 2VZD C 1 20 UNP P49023 PAXI_HUMAN 1 20 DBREF 2VZD D 1 20 UNP P49023 PAXI_HUMAN 1 20 SEQRES 1 A 131 SER GLY ARG HIS GLU ARG ASP ALA PHE ASP THR LEU PHE SEQRES 2 A 131 ASP HIS ALA PRO ASP LYS LEU ASN VAL VAL LYS LYS THR SEQRES 3 A 131 LEU ILE THR PHE VAL ASN LYS HIS LEU ASN LYS LEU ASN SEQRES 4 A 131 LEU GLU VAL THR GLU LEU GLU THR GLN PHE ALA ASP GLY SEQRES 5 A 131 VAL TYR LEU VAL LEU LEU MET GLY LEU LEU GLU GLY TYR SEQRES 6 A 131 PHE VAL PRO LEU HIS SER PHE PHE LEU THR PRO ASP SER SEQRES 7 A 131 PHE GLU GLN LYS VAL LEU ASN VAL SER PHE ALA PHE GLU SEQRES 8 A 131 LEU MET GLN ASP GLY GLY LEU GLU LYS PRO LYS PRO ARG SEQRES 9 A 131 PRO GLU ASP ILE VAL ASN CYS ASP LEU LYS SER THR LEU SEQRES 10 A 131 ARG VAL LEU TYR ASN LEU PHE THR LYS TYR ARG ASN VAL SEQRES 11 A 131 GLU SEQRES 1 B 131 SER GLY ARG HIS GLU ARG ASP ALA PHE ASP THR LEU PHE SEQRES 2 B 131 ASP HIS ALA PRO ASP LYS LEU ASN VAL VAL LYS LYS THR SEQRES 3 B 131 LEU ILE THR PHE VAL ASN LYS HIS LEU ASN LYS LEU ASN SEQRES 4 B 131 LEU GLU VAL THR GLU LEU GLU THR GLN PHE ALA ASP GLY SEQRES 5 B 131 VAL TYR LEU VAL LEU LEU MET GLY LEU LEU GLU GLY TYR SEQRES 6 B 131 PHE VAL PRO LEU HIS SER PHE PHE LEU THR PRO ASP SER SEQRES 7 B 131 PHE GLU GLN LYS VAL LEU ASN VAL SER PHE ALA PHE GLU SEQRES 8 B 131 LEU MET GLN ASP GLY GLY LEU GLU LYS PRO LYS PRO ARG SEQRES 9 B 131 PRO GLU ASP ILE VAL ASN CYS ASP LEU LYS SER THR LEU SEQRES 10 B 131 ARG VAL LEU TYR ASN LEU PHE THR LYS TYR ARG ASN VAL SEQRES 11 B 131 GLU SEQRES 1 C 20 MET ASP ASP LEU ASP ALA LEU LEU ALA ASP LEU GLU SER SEQRES 2 C 20 THR THR SER HIS ILE SER LYS SEQRES 1 D 20 MET ASP ASP LEU ASP ALA LEU LEU ALA ASP LEU GLU SER SEQRES 2 D 20 THR THR SER HIS ILE SER LYS HET PGE A1373 10 HET PG4 A1374 13 HET PGE A1375 10 HET GOL A1376 6 HET GOL A1377 6 HET EDO A1378 4 HET EDO A1379 4 HET PG4 B1373 13 HET GOL B1374 6 HET EDO B1375 4 HET EDO B1376 4 HET EDO B1377 4 HET EDO B1378 4 HET EDO D1015 4 HETNAM PGE TRIETHYLENE GLYCOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 PGE 2(C6 H14 O4) FORMUL 6 PG4 2(C8 H18 O5) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 10 EDO 7(C2 H6 O2) FORMUL 19 HOH *85(H2 O) HELIX 1 1 ASP A 248 ALA A 257 1 10 HELIX 2 2 LYS A 260 ASN A 277 1 18 HELIX 3 3 LYS A 278 ASN A 280 5 3 HELIX 4 4 GLY A 293 GLY A 305 1 13 HELIX 5 5 PRO A 309 PHE A 313 5 5 HELIX 6 6 SER A 319 GLY A 338 1 20 HELIX 7 7 ARG A 345 ASN A 351 1 7 HELIX 8 8 ASP A 353 ARG A 369 1 17 HELIX 9 9 ASP B 248 ALA B 257 1 10 HELIX 10 10 LYS B 260 ASN B 277 1 18 HELIX 11 11 LYS B 278 ASN B 280 5 3 HELIX 12 12 GLY B 293 GLY B 305 1 13 HELIX 13 13 PRO B 309 PHE B 313 5 5 HELIX 14 14 SER B 319 GLY B 337 1 19 HELIX 15 15 ARG B 345 ASN B 351 1 7 HELIX 16 16 ASP B 353 ARG B 369 1 17 HELIX 17 17 ASP C 2 GLU C 12 1 11 HELIX 18 18 MET D 1 GLU D 12 1 12 SITE 1 AC1 3 ASP B 348 ASP B 353 HOH D2001 SITE 1 AC2 5 HIS A 311 PHE A 313 PHE A 314 LEU A 315 SITE 2 AC2 5 LEU A 325 SITE 1 AC3 11 PHE A 254 LEU A 261 PHE A 320 GLU A 321 SITE 2 AC3 11 GLU A 347 ASN A 351 ASP A 353 LEU A 354 SITE 3 AC3 11 LYS A 355 PGE A1375 GOL A1377 SITE 1 AC4 3 ARG A 345 ASP A 348 PG4 A1374 SITE 1 AC5 2 TYR A 306 PHE A 307 SITE 1 AC6 6 ARG A 345 GLU A 347 CYS A 352 ASP A 353 SITE 2 AC6 6 LEU A 354 PG4 A1374 SITE 1 AC7 9 LEU B 310 HIS B 311 PHE B 313 PHE B 314 SITE 2 AC7 9 LEU B 315 PHE B 320 GLU B 321 EDO B1378 SITE 3 AC7 9 HOH B2038 SITE 1 AC8 1 LEU B 279 SITE 1 AC9 6 SER B 328 PHE B 329 GLU B 332 ARG B 345 SITE 2 AC9 6 GLU B 347 EDO B1378 SITE 1 BC1 3 GLN A 289 ASP A 292 TYR A 295 SITE 1 BC2 3 LEU A 298 TYR A 306 VAL B 308 SITE 1 BC3 2 ASP B 292 TYR B 295 SITE 1 BC4 2 THR B 288 LYS B 323 SITE 1 BC5 5 HIS B 311 SER B 312 GLU B 347 PG4 B1373 SITE 2 BC5 5 EDO B1375 CRYST1 133.123 37.503 70.244 90.00 90.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007512 0.000000 0.000043 0.00000 SCALE2 0.000000 0.026665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014236 0.00000 MTRIX1 1 -0.200200 0.867000 -0.456300 -25.91790 1 MTRIX2 1 0.867000 -0.060200 -0.494700 45.65760 1 MTRIX3 1 -0.456400 -0.494600 -0.739700 41.58940 1