PDB Short entry for 2W27 HEADER SIGNALING PROTEIN 24-OCT-08 2W27 TITLE CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN, WITH AN EAL TITLE 2 DOMAIN, IN COMPLEX WITH SUBSTRATE C-DI-GMP AND CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: YKUI PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PROTEIN STRUCTURE INITIATIVE, SIGNALING PROTEIN, STRUCTURAL GENOMICS, KEYWDS 2 PSI, MCSG, EAL DOMAIN, YKUI PROTEIN, CYCLIC DI-GMP EXPDTA X-RAY DIFFRACTION AUTHOR S.PADAVATTAN,W.F.ANDERSON,T.SCHIRMER REVDAT 7 13-DEC-23 2W27 1 REMARK LINK REVDAT 6 06-FEB-19 2W27 1 REMARK REVDAT 5 30-JAN-19 2W27 1 REMARK REVDAT 4 13-JUL-11 2W27 1 VERSN REVDAT 3 12-MAY-09 2W27 1 JRNL REVDAT 2 10-MAR-09 2W27 1 JRNL REVDAT 1 24-FEB-09 2W27 0 JRNL AUTH G.MINASOV,S.PADAVATTAN,L.SHUVALOVA,J.S.BRUNZELLE,D.J.MILLER, JRNL AUTH 2 A.BASLE,C.MASSA,F.R.COLLART,T.SCHIRMER,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURES OF YKUI AND ITS COMPLEX WITH SECOND JRNL TITL 2 MESSENGER C-DI-GMP SUGGESTS CATALYTIC MECHANISM OF JRNL TITL 3 PHOSPHODIESTER BOND CLEAVAGE BY EAL DOMAINS. JRNL REF J.BIOL.CHEM. V. 284 13174 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19244251 JRNL DOI 10.1074/JBC.M808221200 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 3 NUMBER OF REFLECTIONS : 20362 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1103 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6634 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.38000 REMARK 3 B22 (A**2) : -8.51000 REMARK 3 B33 (A**2) : 1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.471 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.423 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 49.154 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6799 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4619 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9211 ; 1.198 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11180 ; 0.833 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 792 ; 5.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 356 ;37.395 ;24.579 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1182 ;18.174 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;15.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 984 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7502 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1434 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1547 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4681 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3341 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3739 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.303 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.257 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 11 ; 0.306 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 1 ; 0.102 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4102 ; 0.905 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1605 ; 0.148 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6362 ; 1.401 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3179 ; 2.281 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2849 ; 3.431 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 4 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 8 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 36 1 REMARK 3 1 B 2 B 36 1 REMARK 3 2 A 38 A 58 1 REMARK 3 2 B 38 B 58 1 REMARK 3 3 A 60 A 66 1 REMARK 3 3 B 60 B 66 1 REMARK 3 4 A 68 A 114 1 REMARK 3 4 B 68 B 114 1 REMARK 3 5 A 116 A 125 1 REMARK 3 5 B 116 B 125 1 REMARK 3 6 A 204 A 237 1 REMARK 3 6 B 204 B 237 1 REMARK 3 7 A 239 A 241 1 REMARK 3 7 B 239 B 241 1 REMARK 3 8 A 243 A 262 1 REMARK 3 8 B 243 B 262 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2418 ; .03 ; .05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2418 ; .08 ; .50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 264 A 287 1 REMARK 3 1 B 264 B 287 1 REMARK 3 2 A 313 A 323 1 REMARK 3 2 B 313 B 323 1 REMARK 3 3 A 342 A 384 1 REMARK 3 3 B 342 B 384 1 REMARK 3 4 A 386 A 391 1 REMARK 3 4 B 386 B 391 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 1210 ; .03 ; .05 REMARK 3 TIGHT THERMAL 2 A (A**2): 1210 ; .11 ; .50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 126 A 136 1 REMARK 3 1 B 126 B 136 1 REMARK 3 2 A 138 A 152 1 REMARK 3 2 B 138 B 152 1 REMARK 3 3 A 166 A 178 1 REMARK 3 3 B 166 B 178 1 REMARK 3 4 A 199 A 203 1 REMARK 3 4 B 199 B 203 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 A (A): 584 ; .04 ; .05 REMARK 3 TIGHT THERMAL 3 A (A**2): 584 ; .11 ; .50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 297 A 311 1 REMARK 3 1 B 297 B 311 1 REMARK 3 2 A 326 A 332 1 REMARK 3 2 B 326 B 332 1 REMARK 3 3 A 334 A 335 1 REMARK 3 3 B 334 B 335 1 REMARK 3 4 A 501 A 503 1 REMARK 3 4 B 501 B 503 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 4 A (A): 404 ; .03 ; .05 REMARK 3 TIGHT POSITIONAL 4 B (A): 404 ; .03 ; .05 REMARK 3 TIGHT THERMAL 4 A (A**2): 404 ; .09 ; .50 REMARK 3 TIGHT THERMAL 4 B (A**2): 404 ; .09 ; .50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 250 REMARK 3 RESIDUE RANGE : A 501 A 503 REMARK 3 ORIGIN FOR THE GROUP (A): 24.6590 59.3060 84.3170 REMARK 3 T TENSOR REMARK 3 T11: -0.0234 T22: 0.4039 REMARK 3 T33: -0.3507 T12: -0.0133 REMARK 3 T13: 0.0748 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.2685 L22: 1.5212 REMARK 3 L33: 8.2056 L12: -0.1844 REMARK 3 L13: -1.4446 L23: 1.7450 REMARK 3 S TENSOR REMARK 3 S11: -0.2029 S12: -0.1559 S13: 0.1845 REMARK 3 S21: 0.4691 S22: 0.0203 S23: 0.1432 REMARK 3 S31: 0.8403 S32: -0.1979 S33: 0.1826 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 251 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7170 55.9940 38.6840 REMARK 3 T TENSOR REMARK 3 T11: -0.5070 T22: 0.4066 REMARK 3 T33: -0.4078 T12: 0.0492 REMARK 3 T13: -0.0082 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 3.7640 L22: 3.3273 REMARK 3 L33: 4.3782 L12: 1.3042 REMARK 3 L13: -1.2512 L23: 0.5871 REMARK 3 S TENSOR REMARK 3 S11: -0.0871 S12: 0.2883 S13: -0.1579 REMARK 3 S21: -0.3362 S22: -0.1253 S23: 0.1721 REMARK 3 S31: 0.4185 S32: -0.0839 S33: 0.2124 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 250 REMARK 3 RESIDUE RANGE : B 501 B 503 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7990 84.2710 54.0620 REMARK 3 T TENSOR REMARK 3 T11: -0.4226 T22: 0.4533 REMARK 3 T33: -0.2903 T12: -0.0025 REMARK 3 T13: 0.0281 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.8997 L22: 7.3060 REMARK 3 L33: 1.7463 L12: 0.8710 REMARK 3 L13: -0.5997 L23: -0.1366 REMARK 3 S TENSOR REMARK 3 S11: 0.1534 S12: -0.1380 S13: 0.3868 REMARK 3 S21: 0.2118 S22: -0.0658 S23: 0.0956 REMARK 3 S31: -0.4658 S32: 0.0360 S33: -0.0877 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 251 B 406 REMARK 3 ORIGIN FOR THE GROUP (A): 38.6090 39.1450 61.1090 REMARK 3 T TENSOR REMARK 3 T11: 0.4154 T22: 0.5453 REMARK 3 T33: -0.2749 T12: 0.1904 REMARK 3 T13: -0.0025 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 1.6612 L22: 6.3863 REMARK 3 L33: 2.1197 L12: 1.3526 REMARK 3 L13: -0.5321 L23: -0.2851 REMARK 3 S TENSOR REMARK 3 S11: -0.1427 S12: -0.1169 S13: -0.3194 REMARK 3 S21: 0.8153 S22: 0.0404 S23: -0.4285 REMARK 3 S31: 1.5434 S32: 0.3140 S33: 0.1023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2W27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1290037257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21459 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 69.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 3.410 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.83 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BAS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM ACETATE THRIHYDRATE, 0.1M REMARK 280 IMIDAZOLE, 0.1M TRIS HYDROCHLORIDE, 28% PEG 4000, 3% GLYCEROL, REMARK 280 PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.08350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.37550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.26050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.37550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.08350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.26050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LYS A 180 REMARK 465 VAL A 181 REMARK 465 SER A 182 REMARK 465 GLN A 183 REMARK 465 PRO A 184 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 VAL B 181 REMARK 465 SER B 182 REMARK 465 GLN B 183 REMARK 465 PRO B 184 REMARK 465 LEU B 400 REMARK 465 TYR B 401 REMARK 465 GLU B 402 REMARK 465 GLN B 403 REMARK 465 ASP B 404 REMARK 465 GLY B 405 REMARK 465 LEU B 406 REMARK 465 ILE B 407 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 58 CD OE1 OE2 REMARK 480 TYR A 136 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 TYR A 219 CD1 CD2 CE1 CE2 CZ OH REMARK 480 ARG A 222 NE CZ NH1 NH2 REMARK 480 GLU A 253 CG CD OE1 OE2 REMARK 480 LYS A 264 CD CE NZ REMARK 480 GLU A 270 CD OE1 OE2 REMARK 480 SER A 309 OG REMARK 480 ARG A 356 NE CZ NH1 NH2 REMARK 480 LEU A 360 CG CD1 CD2 REMARK 480 ARG A 361 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 362 CG CD CE NZ REMARK 480 TYR A 401 CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLU B 43 CG CD OE1 OE2 REMARK 480 SER B 46 OG REMARK 480 GLU B 133 CB CG CD OE1 OE2 REMARK 480 TYR B 136 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 GLU B 242 CD OE1 OE2 REMARK 480 GLU B 304 CB CG CD OE1 OE2 REMARK 480 ASP B 307 CB CG OD1 OD2 REMARK 480 ARG B 361 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE2 TYR A 401 NE2 GLN B 256 1455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 219 CG TYR A 219 CD2 1.472 REMARK 500 TYR A 219 CG TYR A 219 CD1 0.328 REMARK 500 ARG A 222 CD ARG A 222 NE -0.244 REMARK 500 GLU A 270 CG GLU A 270 CD 0.380 REMARK 500 ARG A 356 CD ARG A 356 NE -0.381 REMARK 500 LYS A 362 CB LYS A 362 CG -0.425 REMARK 500 TYR A 401 CG TYR A 401 CD2 0.258 REMARK 500 TYR A 401 CG TYR A 401 CD1 -0.314 REMARK 500 GLU B 43 CB GLU B 43 CG 0.158 REMARK 500 TYR B 136 CB TYR B 136 CG 0.196 REMARK 500 GLU B 242 CG GLU B 242 CD 0.359 REMARK 500 ARG B 361 CD ARG B 361 NE 0.199 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 219 CB - CG - CD2 ANGL. DEV. = -61.8 DEGREES REMARK 500 TYR A 219 CD1 - CG - CD2 ANGL. DEV. = -59.4 DEGREES REMARK 500 TYR A 219 CB - CG - CD1 ANGL. DEV. = -11.6 DEGREES REMARK 500 TYR A 219 CG - CD1 - CE1 ANGL. DEV. = 37.1 DEGREES REMARK 500 GLU A 270 CB - CG - CD ANGL. DEV. = -19.6 DEGREES REMARK 500 ARG A 356 CD - NE - CZ ANGL. DEV. = -22.9 DEGREES REMARK 500 ARG A 361 CA - CB - CG ANGL. DEV. = -29.6 DEGREES REMARK 500 ARG A 361 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LYS A 362 CA - CB - CG ANGL. DEV. = 27.3 DEGREES REMARK 500 TYR A 401 CB - CG - CD2 ANGL. DEV. = -23.1 DEGREES REMARK 500 TYR A 401 CB - CG - CD1 ANGL. DEV. = 16.8 DEGREES REMARK 500 TYR A 401 CG - CD2 - CE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 GLU B 242 CB - CG - CD ANGL. DEV. = -22.9 DEGREES REMARK 500 GLU B 242 CG - CD - OE1 ANGL. DEV. = 13.6 DEGREES REMARK 500 GLU B 242 CG - CD - OE2 ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG B 361 CD - NE - CZ ANGL. DEV. = -8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 79 -166.10 -78.50 REMARK 500 LYS A 156 -76.71 -118.62 REMARK 500 ALA A 178 -13.61 -48.33 REMARK 500 ASN A 223 49.57 -108.78 REMARK 500 LEU A 233 -79.31 -82.77 REMARK 500 ASP A 244 40.59 -100.92 REMARK 500 TYR A 349 -20.75 71.83 REMARK 500 ASP A 367 -178.44 -65.84 REMARK 500 GLN B 27 46.65 39.89 REMARK 500 ALA B 79 -164.96 -78.56 REMARK 500 LYS B 156 -58.13 -132.69 REMARK 500 GLU B 157 -108.68 -122.26 REMARK 500 SER B 159 153.47 -48.58 REMARK 500 ASN B 160 108.27 -160.53 REMARK 500 LEU B 233 -76.76 -87.38 REMARK 500 ASP B 244 41.28 -100.08 REMARK 500 ASN B 290 49.26 -86.80 REMARK 500 LEU B 291 72.09 -107.37 REMARK 500 LEU B 305 30.44 -96.51 REMARK 500 TYR B 349 -22.96 76.15 REMARK 500 ARG B 361 18.60 58.59 REMARK 500 ASP B 367 -179.89 -64.40 REMARK 500 GLU B 373 -61.19 -91.27 REMARK 500 TYR B 397 -111.05 78.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 219 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 33 OE1 REMARK 620 2 ASN A 88 ND2 99.6 REMARK 620 3 GLU A 122 OE1 86.4 97.9 REMARK 620 4 5GP A 501 O1P 85.6 71.6 165.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 33 OE1 REMARK 620 2 ASN B 88 ND2 96.4 REMARK 620 3 GLU B 122 OE1 82.3 98.1 REMARK 620 4 5GP B 501 O1P 83.7 78.5 165.2 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BAS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS YKUI PROTEIN,WITH AN EAL REMARK 900 DOMAIN. REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUE -23, INITIAL MET, RESIDUES -22 TO -17, HIS TAG, REMARK 999 RESIDUES -16 TO 0, CLONING ARTIFACT, SAME AS IN ENTRY 2BAS DBREF 2W27 A -23 0 PDB 2W27 2W27 -23 0 DBREF 2W27 A 1 407 UNP O35014 O35014_BACSU 1 407 DBREF 2W27 B -23 0 PDB 2W27 2W27 -23 0 DBREF 2W27 B 1 407 UNP O35014 O35014_BACSU 1 407 SEQRES 1 A 431 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 431 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET LEU SEQRES 3 A 431 ASP PRO LEU ASP ILE LEU THR ASN ILE ASP ASP VAL LEU SEQRES 4 A 431 PRO TYR TYR GLN ALA ILE PHE SER ALA GLU GLU GLN LYS SEQRES 5 A 431 VAL VAL GLY TYR GLU VAL LEU GLY ARG ILE LEU ALA ASP SEQRES 6 A 431 SER GLU ILE GLN SER LEU GLY PRO PHE PHE LEU ASP ALA SEQRES 7 A 431 GLY ILE PRO GLU GLU TYR LYS LEU GLU VAL ASP ASN ARG SEQRES 8 A 431 ILE ILE ARG GLN ALA LEU ASP ARG PHE LEU GLU ALA ASP SEQRES 9 A 431 SER ASP LEU LEU ILE PHE MET ASN GLN ASP ALA ASN LEU SEQRES 10 A 431 LEU MET LEU ASP HIS GLY GLU SER PHE LEU GLU LEU LEU SEQRES 11 A 431 LYS GLU TYR GLU ALA LYS GLY ILE GLU LEU HIS ARG PHE SEQRES 12 A 431 VAL LEU GLU ILE THR GLU HIS ASN PHE GLU GLY ASP ILE SEQRES 13 A 431 GLU GLN LEU TYR HIS MET LEU ALA TYR TYR ARG THR TYR SEQRES 14 A 431 GLY ILE LYS ILE ALA VAL ASP ASN ILE GLY LYS GLU SER SEQRES 15 A 431 SER ASN LEU ASP ARG ILE ALA LEU LEU SER PRO ASP LEU SEQRES 16 A 431 LEU LYS ILE ASP LEU GLN ALA LEU LYS VAL SER GLN PRO SEQRES 17 A 431 SER PRO SER TYR GLU HIS VAL LEU TYR SER ILE SER LEU SEQRES 18 A 431 LEU ALA ARG LYS ILE GLY ALA ALA LEU LEU TYR GLU ASP SEQRES 19 A 431 ILE GLU ALA ASN PHE GLN LEU GLN TYR ALA TRP ARG ASN SEQRES 20 A 431 GLY GLY ARG TYR PHE GLN GLY TYR TYR LEU VAL SER PRO SEQRES 21 A 431 SER GLU THR PHE LEU GLU ARG ASP VAL LEU LYS GLN ARG SEQRES 22 A 431 LEU LYS THR GLU PHE HIS GLN PHE ILE THR HIS GLU LYS SEQRES 23 A 431 LYS LYS LEU GLU THR VAL TYR GLU HIS SER GLU GLN PHE SEQRES 24 A 431 TYR LYS ARG VAL HIS GLN ALA VAL THR SER LEU ARG LYS SEQRES 25 A 431 ASN ASN LEU SER SER ASP ASP ASP PHE ILE LYS LYS LEU SEQRES 26 A 431 ALA GLU GLU LEU THR ASP CYS SER PHE ARG ILE TYR MET SEQRES 27 A 431 CYS ASP GLU GLU GLY ASP GLN LEU THR GLY ASN VAL PHE SEQRES 28 A 431 LYS GLN ASP GLY GLU TRP ILE TYR GLN PRO GLU TYR ALA SEQRES 29 A 431 GLU LYS ASN TRP SER TRP ARG PRO TYR PHE LEU GLU ASN SEQRES 30 A 431 ILE MET ARG MET ARG ASN LEU ARG LYS GLY PHE PHE SER SEQRES 31 A 431 ASP LEU TYR SER ASP LEU GLU THR GLY GLU MET ILE ARG SEQRES 32 A 431 THR PHE SER TYR PRO MET ASP ASP GLN MET TYR LEU PHE SEQRES 33 A 431 ILE ASP LEU PRO TYR SER TYR LEU TYR GLU GLN ASP GLY SEQRES 34 A 431 LEU ILE SEQRES 1 B 431 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 431 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET LEU SEQRES 3 B 431 ASP PRO LEU ASP ILE LEU THR ASN ILE ASP ASP VAL LEU SEQRES 4 B 431 PRO TYR TYR GLN ALA ILE PHE SER ALA GLU GLU GLN LYS SEQRES 5 B 431 VAL VAL GLY TYR GLU VAL LEU GLY ARG ILE LEU ALA ASP SEQRES 6 B 431 SER GLU ILE GLN SER LEU GLY PRO PHE PHE LEU ASP ALA SEQRES 7 B 431 GLY ILE PRO GLU GLU TYR LYS LEU GLU VAL ASP ASN ARG SEQRES 8 B 431 ILE ILE ARG GLN ALA LEU ASP ARG PHE LEU GLU ALA ASP SEQRES 9 B 431 SER ASP LEU LEU ILE PHE MET ASN GLN ASP ALA ASN LEU SEQRES 10 B 431 LEU MET LEU ASP HIS GLY GLU SER PHE LEU GLU LEU LEU SEQRES 11 B 431 LYS GLU TYR GLU ALA LYS GLY ILE GLU LEU HIS ARG PHE SEQRES 12 B 431 VAL LEU GLU ILE THR GLU HIS ASN PHE GLU GLY ASP ILE SEQRES 13 B 431 GLU GLN LEU TYR HIS MET LEU ALA TYR TYR ARG THR TYR SEQRES 14 B 431 GLY ILE LYS ILE ALA VAL ASP ASN ILE GLY LYS GLU SER SEQRES 15 B 431 SER ASN LEU ASP ARG ILE ALA LEU LEU SER PRO ASP LEU SEQRES 16 B 431 LEU LYS ILE ASP LEU GLN ALA LEU LYS VAL SER GLN PRO SEQRES 17 B 431 SER PRO SER TYR GLU HIS VAL LEU TYR SER ILE SER LEU SEQRES 18 B 431 LEU ALA ARG LYS ILE GLY ALA ALA LEU LEU TYR GLU ASP SEQRES 19 B 431 ILE GLU ALA ASN PHE GLN LEU GLN TYR ALA TRP ARG ASN SEQRES 20 B 431 GLY GLY ARG TYR PHE GLN GLY TYR TYR LEU VAL SER PRO SEQRES 21 B 431 SER GLU THR PHE LEU GLU ARG ASP VAL LEU LYS GLN ARG SEQRES 22 B 431 LEU LYS THR GLU PHE HIS GLN PHE ILE THR HIS GLU LYS SEQRES 23 B 431 LYS LYS LEU GLU THR VAL TYR GLU HIS SER GLU GLN PHE SEQRES 24 B 431 TYR LYS ARG VAL HIS GLN ALA VAL THR SER LEU ARG LYS SEQRES 25 B 431 ASN ASN LEU SER SER ASP ASP ASP PHE ILE LYS LYS LEU SEQRES 26 B 431 ALA GLU GLU LEU THR ASP CYS SER PHE ARG ILE TYR MET SEQRES 27 B 431 CYS ASP GLU GLU GLY ASP GLN LEU THR GLY ASN VAL PHE SEQRES 28 B 431 LYS GLN ASP GLY GLU TRP ILE TYR GLN PRO GLU TYR ALA SEQRES 29 B 431 GLU LYS ASN TRP SER TRP ARG PRO TYR PHE LEU GLU ASN SEQRES 30 B 431 ILE MET ARG MET ARG ASN LEU ARG LYS GLY PHE PHE SER SEQRES 31 B 431 ASP LEU TYR SER ASP LEU GLU THR GLY GLU MET ILE ARG SEQRES 32 B 431 THR PHE SER TYR PRO MET ASP ASP GLN MET TYR LEU PHE SEQRES 33 B 431 ILE ASP LEU PRO TYR SER TYR LEU TYR GLU GLN ASP GLY SEQRES 34 B 431 LEU ILE HET 5GP A 501 23 HET 5GP A 502 23 HET CA A 503 1 HET 5GP B 501 23 HET 5GP B 502 23 HET CA B 503 1 HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION FORMUL 3 5GP 4(C10 H14 N5 O8 P) FORMUL 5 CA 2(CA 2+) FORMUL 9 HOH *7(H2 O) HELIX 1 1 ASP A 3 ASN A 10 1 8 HELIX 2 2 LEU A 47 ASP A 53 1 7 HELIX 3 3 PRO A 57 LEU A 77 1 21 HELIX 4 4 ASP A 90 MET A 95 1 6 HELIX 5 5 LEU A 96 HIS A 98 5 3 HELIX 6 6 GLY A 99 GLY A 113 1 15 HELIX 7 7 GLU A 115 HIS A 117 5 3 HELIX 8 8 THR A 124 PHE A 128 5 5 HELIX 9 9 ASP A 131 THR A 144 1 14 HELIX 10 10 ASN A 160 SER A 168 1 9 HELIX 11 11 PRO A 186 GLY A 203 1 18 HELIX 12 12 ALA A 213 ASN A 223 1 11 HELIX 13 13 LEU A 246 LYS A 288 1 43 HELIX 14 14 SER A 293 LEU A 305 1 13 HELIX 15 15 PRO A 337 ALA A 340 5 4 HELIX 16 16 TYR A 349 ARG A 361 1 13 HELIX 17 17 PRO A 396 GLU A 402 1 7 HELIX 18 18 ASP B 3 ASN B 10 1 8 HELIX 19 19 LEU B 47 ASP B 53 1 7 HELIX 20 20 PRO B 57 LEU B 77 1 21 HELIX 21 21 ASP B 90 MET B 95 1 6 HELIX 22 22 LEU B 96 HIS B 98 5 3 HELIX 23 23 GLY B 99 GLY B 113 1 15 HELIX 24 24 GLU B 115 HIS B 117 5 3 HELIX 25 25 THR B 124 PHE B 128 5 5 HELIX 26 26 ASP B 131 THR B 144 1 14 HELIX 27 27 ASN B 160 SER B 168 1 9 HELIX 28 28 GLN B 177 LYS B 180 5 4 HELIX 29 29 TYR B 188 GLY B 203 1 16 HELIX 30 30 ALA B 213 ASN B 223 1 11 HELIX 31 31 LEU B 246 LYS B 288 1 43 HELIX 32 32 SER B 293 LEU B 305 1 13 HELIX 33 33 PRO B 337 ALA B 340 5 4 HELIX 34 34 TYR B 349 ARG B 361 1 13 SHEET 1 AA19 VAL A 14 SER A 23 0 SHEET 2 AA19 VAL A 29 LEU A 39 -1 N VAL A 30 O ILE A 21 SHEET 3 AA19 ILE A 44 SER A 46 -1 O GLN A 45 N ILE A 38 SHEET 4 AA19 VAL A 29 LEU A 39 1 O ILE A 38 N GLN A 45 SHEET 5 AA19 VAL A 14 SER A 23 -1 O LEU A 15 N ARG A 37 SHEET 6 AA19 ILE A 44 SER A 46 0 SHEET 7 AA19 VAL A 29 LEU A 39 1 O ILE A 38 N GLN A 45 SHEET 8 AA19 LEU A 84 ASN A 88 1 O LEU A 84 N TYR A 32 SHEET 9 AA19 VAL A 29 LEU A 39 1 O VAL A 30 N LEU A 84 SHEET 10 AA19 PHE A 119 ILE A 123 0 SHEET 11 AA19 LEU A 84 ASN A 88 1 O ILE A 85 N VAL A 120 SHEET 12 AA19 LYS A 148 ILE A 154 0 SHEET 13 AA19 PHE A 119 ILE A 123 1 O PHE A 119 N LYS A 148 SHEET 14 AA19 LEU A 171 ASP A 175 0 SHEET 15 AA19 LYS A 148 ILE A 154 1 O VAL A 151 N LYS A 173 SHEET 16 AA19 ALA A 205 GLU A 209 0 SHEET 17 AA19 LEU A 171 ASP A 175 1 O LEU A 172 N LEU A 207 SHEET 18 AA19 GLY A 225 PHE A 228 0 SHEET 19 AA19 VAL A 14 SER A 23 -1 O PHE A 22 N PHE A 228 SHEET 1 AB 9 GLU A 332 GLN A 336 0 SHEET 2 AB 9 ASN A 325 GLN A 329 -1 O ASN A 325 N GLN A 336 SHEET 3 AB 9 ARG A 311 ASP A 316 -1 O ILE A 312 N VAL A 326 SHEET 4 AB 9 MET A 389 LEU A 395 -1 O TYR A 390 N CYS A 315 SHEET 5 AB 9 MET A 377 PRO A 384 -1 O ARG A 379 N LEU A 395 SHEET 6 AB 9 PHE A 364 PHE A 365 -1 O PHE A 364 N SER A 382 SHEET 7 AB 9 MET A 377 PRO A 384 -1 O SER A 382 N PHE A 364 SHEET 8 AB 9 TYR A 369 SER A 370 -1 O TYR A 369 N ILE A 378 SHEET 9 AB 9 MET A 377 PRO A 384 -1 O ILE A 378 N TYR A 369 SHEET 1 BA18 VAL B 14 SER B 23 0 SHEET 2 BA18 VAL B 29 LEU B 39 -1 N VAL B 30 O ILE B 21 SHEET 3 BA18 VAL B 29 LEU B 39 0 SHEET 4 BA18 VAL B 14 SER B 23 -1 O LEU B 15 N ARG B 37 SHEET 5 BA18 ILE B 44 SER B 46 0 SHEET 6 BA18 VAL B 29 LEU B 39 -1 O ILE B 38 N GLN B 45 SHEET 7 BA18 LEU B 84 ASN B 88 1 O LEU B 84 N TYR B 32 SHEET 8 BA18 VAL B 29 LEU B 39 1 O VAL B 30 N LEU B 84 SHEET 9 BA18 PHE B 119 ILE B 123 0 SHEET 10 BA18 LEU B 84 ASN B 88 1 O ILE B 85 N VAL B 120 SHEET 11 BA18 LYS B 148 VAL B 151 0 SHEET 12 BA18 PHE B 119 ILE B 123 1 O PHE B 119 N LYS B 148 SHEET 13 BA18 LEU B 171 ASP B 175 0 SHEET 14 BA18 LYS B 148 VAL B 151 1 O ILE B 149 N LEU B 171 SHEET 15 BA18 ALA B 205 GLU B 209 0 SHEET 16 BA18 LEU B 171 ASP B 175 1 O LEU B 172 N LEU B 207 SHEET 17 BA18 GLY B 225 PHE B 228 0 SHEET 18 BA18 VAL B 14 SER B 23 -1 O PHE B 22 N PHE B 228 SHEET 1 BB 9 GLU B 332 GLN B 336 0 SHEET 2 BB 9 ASN B 325 GLN B 329 -1 O ASN B 325 N GLN B 336 SHEET 3 BB 9 ARG B 311 ASP B 316 -1 O ILE B 312 N VAL B 326 SHEET 4 BB 9 MET B 389 LEU B 395 -1 O TYR B 390 N CYS B 315 SHEET 5 BB 9 MET B 377 MET B 385 -1 O ARG B 379 N LEU B 395 SHEET 6 BB 9 PHE B 364 PHE B 365 -1 O PHE B 364 N SER B 382 SHEET 7 BB 9 MET B 377 MET B 385 -1 O SER B 382 N PHE B 364 SHEET 8 BB 9 TYR B 369 SER B 370 -1 O TYR B 369 N ILE B 378 SHEET 9 BB 9 MET B 377 MET B 385 -1 O ILE B 378 N TYR B 369 LINK P 5GP A 501 O3' 5GP A 502 1555 1555 1.63 LINK O3' 5GP A 501 P 5GP A 502 1555 1555 1.57 LINK P 5GP B 501 O3' 5GP B 502 1555 1555 1.61 LINK O3' 5GP B 501 P 5GP B 502 1555 1555 1.59 LINK OE1 GLU A 33 CA CA A 503 1555 1555 2.34 LINK ND2 ASN A 88 CA CA A 503 1555 1555 2.53 LINK OE1 GLU A 122 CA CA A 503 1555 1555 1.97 LINK O1P 5GP A 501 CA CA A 503 1555 1555 2.17 LINK OE1 GLU B 33 CA CA B 503 1555 1555 2.50 LINK ND2 ASN B 88 CA CA B 503 1555 1555 2.30 LINK OE1 GLU B 122 CA CA B 503 1555 1555 2.10 LINK O1P 5GP B 501 CA CA B 503 1555 1555 2.13 SITE 1 AC1 11 GLN A 19 GLU A 33 ARG A 37 ASN A 88 SITE 2 AC1 11 GLN A 177 ASP A 210 GLU A 212 GLY A 230 SITE 3 AC1 11 TYR A 231 5GP A 502 CA A 503 SITE 1 AC2 10 LEU A 35 GLY A 36 ARG A 37 SER A 46 SITE 2 AC2 10 GLY A 48 PHE A 51 ASP A 65 ILE A 68 SITE 3 AC2 10 ASN A 88 5GP A 501 SITE 1 AC3 5 GLU A 33 ASN A 88 GLU A 122 ASP A 152 SITE 2 AC3 5 5GP A 501 SITE 1 AC4 10 GLN B 19 GLU B 33 ASN B 88 ASP B 210 SITE 2 AC4 10 ILE B 211 GLU B 212 GLY B 230 TYR B 231 SITE 3 AC4 10 5GP B 502 CA B 503 SITE 1 AC5 9 LEU B 35 GLY B 36 ARG B 37 SER B 46 SITE 2 AC5 9 GLY B 48 PHE B 51 ASP B 65 ASN B 88 SITE 3 AC5 9 5GP B 501 SITE 1 AC6 5 GLU B 33 ASN B 88 GLU B 122 ASP B 152 SITE 2 AC6 5 5GP B 501 CRYST1 46.167 124.521 168.751 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021660 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005926 0.00000