PDB Short entry for 2W96 HEADER CELL CYCLE 21-JAN-09 2W96 TITLE CRYSTAL STRUCTURE OF CDK4 IN COMPLEX WITH A D-TYPE CYCLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: G1/S-SPECIFIC CYCLIN-D1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D-TYPE CYCLIN, PRAD1 ONCOGENE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CELL DIVISION PROTEIN KINASE 4; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: KINASE DOMAIN, RESIDUES 1-44,48-303; COMPND 10 SYNONYM: CDK4, CYCLIN-DEPENDENT KINASE 4, PSK-J3; COMPND 11 EC: 2.7.11.22; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS SERINE/THREONINE-PROTEIN KINASE, CHROMOSOMAL REARRANGEMENT, ATP- KEYWDS 2 BINDING, TRANSFERASE, POLYMORPHISM, CELL DIVISION, PROTO-ONCOGENE, KEYWDS 3 PHOSPHOPROTEIN, DISEASE MUTATION, NUCLEOTIDE-BINDING, CYCLIN KEYWDS 4 DEPENDENT KINASE, KINASE, CYCLIN, ONCOLOGY, CELL CYCLE, DRUG DESGN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.DAY,A.CLEASBY,I.J.TICKLE,M.O.REILLY,J.E.COYLE,F.P.HOLDING, AUTHOR 2 R.L.MCMENAMIN,J.YON,R.CHOPRA,C.LENGAUER,H.JHOTI REVDAT 4 13-DEC-23 2W96 1 REMARK REVDAT 3 24-APR-19 2W96 1 SOURCE REVDAT 2 31-MAR-09 2W96 1 JRNL REVDAT 1 10-MAR-09 2W96 0 JRNL AUTH P.J.DAY,A.CLEASBY,I.J.TICKLE,M.O'REILLY,J.E.COYLE, JRNL AUTH 2 F.P.HOLDING,R.L.MCMENAMIN,J.YON,R.CHOPRA,C.LENGAUER,H.JHOTI JRNL TITL CRYSTAL STRUCTURE OF HUMAN CDK4 IN COMPLEX WITH A D-TYPE JRNL TITL 2 CYCLIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 4166 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19237565 JRNL DOI 10.1073/PNAS.0809645106 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.1.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 27793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1356 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4442 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2140 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4217 REMARK 3 BIN R VALUE (WORKING SET) : 0.2122 REMARK 3 BIN FREE R VALUE : 0.2486 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.07 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 225 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4099 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.27212 REMARK 3 B22 (A**2) : 7.59665 REMARK 3 B33 (A**2) : -9.86877 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES A6-A13 WERE BUILT INTO A STRETCH OF PROTEIN REMARK 3 LIKE DENSITY, CLOSE TO THE N-TERMINAL REGION OF CYCLIN D. THEY REMARK 3 ARE POORLY DEFINED. THE N AND C-TERMINI OF BOTH MOLECULE A AND REMARK 3 MOLECULE B ARE NOT VISIBLE IN THE ELECTRON DENSITY. RESIDUES 236 REMARK 3 TO 257 IN MOLECULE B CANNOT BE SEEN IN THE ELECTRON DENSITY. REMARK 3 DISORDERED REGIONS WERE MODELLED STEREOCHEMICALLY WHERE THE REMARK 3 DENSITY WAS NOT CLEAR. IN REGIONS WHERE THE DENSITY WAS REMARK 3 UNINTERPRETABLE OR ABSENT, RESIDUES WERE OMITTED. REMARK 4 REMARK 4 2W96 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1290038600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 84.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BLX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.95300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.34300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.34250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.34300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.95300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.34250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLY 43 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLY 44 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, THR 172 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 HIS A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 ALA A 16 REMARK 465 TYR A 17 REMARK 465 PRO A 18 REMARK 465 ASP A 19 REMARK 465 ALA A 20 REMARK 465 ASN A 21 REMARK 465 LEU A 22 REMARK 465 LEU A 23 REMARK 465 ASN A 24 REMARK 465 MET A 266 REMARK 465 ASP A 267 REMARK 465 PRO A 268 REMARK 465 LYS A 269 REMARK 465 ALA A 270 REMARK 465 ALA A 271 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 PRO B 239 REMARK 465 ARG B 240 REMARK 465 ASP B 241 REMARK 465 VAL B 242 REMARK 465 SER B 243 REMARK 465 LEU B 244 REMARK 465 PRO B 245 REMARK 465 ARG B 246 REMARK 465 GLY B 247 REMARK 465 ALA B 248 REMARK 465 PHE B 249 REMARK 465 PRO B 250 REMARK 465 PRO B 251 REMARK 465 ARG B 252 REMARK 465 GLY B 253 REMARK 465 PRO B 254 REMARK 465 ARG B 255 REMARK 465 PRO B 256 REMARK 465 VAL B 257 REMARK 465 GLN B 258 REMARK 465 SER B 259 REMARK 465 VAL B 260 REMARK 465 HIS B 296 REMARK 465 LYS B 297 REMARK 465 ASP B 298 REMARK 465 GLU B 299 REMARK 465 GLY B 300 REMARK 465 ASN B 301 REMARK 465 PRO B 302 REMARK 465 GLU B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 13 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 220 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO B 113 C - N - CD ANGL. DEV. = -14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 8 164.45 -32.23 REMARK 500 VAL A 10 -115.36 -118.01 REMARK 500 GLU A 11 4.05 159.66 REMARK 500 PRO A 40 -179.71 -68.98 REMARK 500 PRO A 169 40.82 -67.95 REMARK 500 SER A 219 84.08 -151.75 REMARK 500 LYS A 238 35.08 71.68 REMARK 500 PRO B 8 163.35 -47.77 REMARK 500 VAL B 9 0.09 -165.66 REMARK 500 ALA B 10 174.34 171.57 REMARK 500 THR B 80 -65.90 -91.58 REMARK 500 ARG B 82 116.53 -172.74 REMARK 500 ARG B 101 -71.42 -58.20 REMARK 500 PRO B 108 169.34 -46.07 REMARK 500 LEU B 112 139.99 -173.71 REMARK 500 PRO B 113 -169.54 -112.19 REMARK 500 ARG B 139 -28.84 84.56 REMARK 500 LEU B 171 59.64 -152.63 REMARK 500 ASP B 172 -1.73 -146.38 REMARK 500 VAL B 174 81.26 81.98 REMARK 500 VAL B 175 -5.42 -141.55 REMARK 500 VAL B 176 70.45 22.28 REMARK 500 LEU B 186 66.80 -68.12 REMARK 500 LEU B 187 151.61 -35.26 REMARK 500 SER B 189 -63.78 -126.72 REMARK 500 TYR B 191 32.23 83.55 REMARK 500 ALA B 192 -166.47 -126.21 REMARK 500 ARG B 209 -140.34 -63.96 REMARK 500 ARG B 210 15.25 -173.61 REMARK 500 PRO B 212 100.41 -40.76 REMARK 500 PHE B 214 97.57 65.87 REMARK 500 CYS B 215 -150.05 -113.65 REMARK 500 ASN B 217 178.49 63.21 REMARK 500 ASP B 237 42.82 -107.65 REMARK 500 LEU B 276 35.66 -88.08 REMARK 500 PHE B 278 -28.31 -28.96 REMARK 500 GLN B 291 50.42 -96.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2003 DISTANCE = 8.21 ANGSTROMS REMARK 525 HOH B2001 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH B2035 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH B2036 DISTANCE = 8.03 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1266 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LD2 RELATED DB: PDB REMARK 900 THEORETICAL STRUCTURE OF HUMAN CYCLIN- DEPENDENT KINASE 4(CDK4) REMARK 900 RELATED ID: 2W99 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK4 IN COMPLEX WITH A D-TYPE CYCLIN REMARK 900 RELATED ID: 2W9Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK4 IN COMPLEX WITH A D-TYPE CYCLIN REMARK 900 RELATED ID: 2W9F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CDK4 IN COMPLEX WITH A D-TYPE CYCLIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-271 WERE EXPRESSED, BUT THE N AND C-TERMINAL REMARK 999 WERE DISORDERED AND THEREFORE NOT COMPLETE IN THE MODEL. REMARK 999 HIS TAG WAS ADDED AT THE C-TERMINAL. RESIDUES 45-47 REMARK 999 IN CHAIN B HAVE BEEN DELETED. DBREF 2W96 A 1 271 UNP P24385 CCND1_HUMAN 1 271 DBREF 2W96 B 1 44 UNP P11802 CDK4_HUMAN 1 44 DBREF 2W96 B 48 303 UNP P11802 CDK4_HUMAN 48 303 DBREF 2W96 B 304 309 PDB 2W96 2W96 304 309 SEQADV 2W96 GLU B 43 UNP P11802 GLY 43 ENGINEERED MUTATION SEQADV 2W96 GLU B 44 UNP P11802 GLY 44 ENGINEERED MUTATION SEQADV 2W96 ASP B 172 UNP P11802 THR 172 ENGINEERED MUTATION SEQRES 1 A 271 MET GLU HIS GLN LEU LEU CYS CYS GLU VAL GLU THR ILE SEQRES 2 A 271 ARG ARG ALA TYR PRO ASP ALA ASN LEU LEU ASN ASP ARG SEQRES 3 A 271 VAL LEU ARG ALA MET LEU LYS ALA GLU GLU THR CYS ALA SEQRES 4 A 271 PRO SER VAL SER TYR PHE LYS CYS VAL GLN LYS GLU VAL SEQRES 5 A 271 LEU PRO SER MET ARG LYS ILE VAL ALA THR TRP MET LEU SEQRES 6 A 271 GLU VAL CYS GLU GLU GLN LYS CYS GLU GLU GLU VAL PHE SEQRES 7 A 271 PRO LEU ALA MET ASN TYR LEU ASP ARG PHE LEU SER LEU SEQRES 8 A 271 GLU PRO VAL LYS LYS SER ARG LEU GLN LEU LEU GLY ALA SEQRES 9 A 271 THR CYS MET PHE VAL ALA SER LYS MET LYS GLU THR ILE SEQRES 10 A 271 PRO LEU THR ALA GLU LYS LEU CYS ILE TYR THR ASP ASN SEQRES 11 A 271 SER ILE ARG PRO GLU GLU LEU LEU GLN MET GLU LEU LEU SEQRES 12 A 271 LEU VAL ASN LYS LEU LYS TRP ASN LEU ALA ALA MET THR SEQRES 13 A 271 PRO HIS ASP PHE ILE GLU HIS PHE LEU SER LYS MET PRO SEQRES 14 A 271 GLU ALA GLU GLU ASN LYS GLN ILE ILE ARG LYS HIS ALA SEQRES 15 A 271 GLN THR PHE VAL ALA LEU CYS ALA THR ASP VAL LYS PHE SEQRES 16 A 271 ILE SER ASN PRO PRO SER MET VAL ALA ALA GLY SER VAL SEQRES 17 A 271 VAL ALA ALA VAL GLN GLY LEU ASN LEU ARG SER PRO ASN SEQRES 18 A 271 ASN PHE LEU SER TYR TYR ARG LEU THR ARG PHE LEU SER SEQRES 19 A 271 ARG VAL ILE LYS CYS ASP PRO ASP CYS LEU ARG ALA CYS SEQRES 20 A 271 GLN GLU GLN ILE GLU ALA LEU LEU GLU SER SER LEU ARG SEQRES 21 A 271 GLN ALA GLN GLN ASN MET ASP PRO LYS ALA ALA SEQRES 1 B 306 MET ALA THR SER ARG TYR GLU PRO VAL ALA GLU ILE GLY SEQRES 2 B 306 VAL GLY ALA TYR GLY THR VAL TYR LYS ALA ARG ASP PRO SEQRES 3 B 306 HIS SER GLY HIS PHE VAL ALA LEU LYS SER VAL ARG VAL SEQRES 4 B 306 PRO ASN GLY GLU GLU GLY LEU PRO ILE SER THR VAL ARG SEQRES 5 B 306 GLU VAL ALA LEU LEU ARG ARG LEU GLU ALA PHE GLU HIS SEQRES 6 B 306 PRO ASN VAL VAL ARG LEU MET ASP VAL CYS ALA THR SER SEQRES 7 B 306 ARG THR ASP ARG GLU ILE LYS VAL THR LEU VAL PHE GLU SEQRES 8 B 306 HIS VAL ASP GLN ASP LEU ARG THR TYR LEU ASP LYS ALA SEQRES 9 B 306 PRO PRO PRO GLY LEU PRO ALA GLU THR ILE LYS ASP LEU SEQRES 10 B 306 MET ARG GLN PHE LEU ARG GLY LEU ASP PHE LEU HIS ALA SEQRES 11 B 306 ASN CYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN ILE SEQRES 12 B 306 LEU VAL THR SER GLY GLY THR VAL LYS LEU ALA ASP PHE SEQRES 13 B 306 GLY LEU ALA ARG ILE TYR SER TYR GLN MET ALA LEU ASP SEQRES 14 B 306 PRO VAL VAL VAL THR LEU TRP TYR ARG ALA PRO GLU VAL SEQRES 15 B 306 LEU LEU GLN SER THR TYR ALA THR PRO VAL ASP MET TRP SEQRES 16 B 306 SER VAL GLY CYS ILE PHE ALA GLU MET PHE ARG ARG LYS SEQRES 17 B 306 PRO LEU PHE CYS GLY ASN SER GLU ALA ASP GLN LEU GLY SEQRES 18 B 306 LYS ILE PHE ASP LEU ILE GLY LEU PRO PRO GLU ASP ASP SEQRES 19 B 306 TRP PRO ARG ASP VAL SER LEU PRO ARG GLY ALA PHE PRO SEQRES 20 B 306 PRO ARG GLY PRO ARG PRO VAL GLN SER VAL VAL PRO GLU SEQRES 21 B 306 MET GLU GLU SER GLY ALA GLN LEU LEU LEU GLU MET LEU SEQRES 22 B 306 THR PHE ASN PRO HIS LYS ARG ILE SER ALA PHE ARG ALA SEQRES 23 B 306 LEU GLN HIS SER TYR LEU HIS LYS ASP GLU GLY ASN PRO SEQRES 24 B 306 GLU HIS HIS HIS HIS HIS HIS HET GOL A1266 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *190(H2 O) HELIX 1 1 ASP A 25 CYS A 38 1 14 HELIX 2 2 SER A 43 VAL A 48 1 6 HELIX 3 3 LEU A 53 GLN A 71 1 19 HELIX 4 4 GLU A 76 SER A 90 1 15 HELIX 5 5 ARG A 98 GLU A 115 1 18 HELIX 6 6 THR A 120 THR A 128 1 9 HELIX 7 7 ARG A 133 LEU A 148 1 16 HELIX 8 8 THR A 156 LYS A 167 1 12 HELIX 9 9 ALA A 171 THR A 191 1 21 HELIX 10 10 VAL A 193 ASN A 198 1 6 HELIX 11 11 PRO A 199 SER A 219 1 21 HELIX 12 12 PHE A 223 TYR A 227 5 5 HELIX 13 13 ARG A 228 LYS A 238 1 11 HELIX 14 14 ASP A 240 GLU A 256 1 17 HELIX 15 15 PRO B 50 GLU B 64 1 15 HELIX 16 16 ALA B 65 GLU B 67 5 3 HELIX 17 17 ASP B 99 LYS B 106 1 8 HELIX 18 18 PRO B 113 ASN B 134 1 22 HELIX 19 19 LEU B 161 ALA B 170 1 10 HELIX 20 20 PRO B 194 ARG B 209 1 16 HELIX 21 21 SER B 218 GLY B 231 1 14 HELIX 22 22 GLU B 265 LEU B 276 1 12 HELIX 23 23 ASN B 279 ARG B 283 5 5 HELIX 24 24 SER B 285 GLN B 291 1 7 SHEET 1 BA 5 GLU B 7 GLY B 13 0 SHEET 2 BA 5 VAL B 20 ARG B 24 -1 O VAL B 20 N GLY B 13 SHEET 3 BA 5 PHE B 31 PRO B 40 -1 O VAL B 32 N ALA B 23 SHEET 4 BA 5 GLU B 86 GLU B 94 -1 O ILE B 87 N VAL B 39 SHEET 5 BA 5 LEU B 74 ARG B 82 -1 N MET B 75 O VAL B 92 SHEET 1 BB 2 ILE B 146 VAL B 148 0 SHEET 2 BB 2 VAL B 154 LEU B 156 -1 O LYS B 155 N LEU B 147 CISPEP 1 PRO B 109 PRO B 110 0 1.59 CISPEP 2 GLY B 111 LEU B 112 0 -0.99 CISPEP 3 LEU B 112 PRO B 113 0 -2.46 CISPEP 4 LEU B 171 ASP B 172 0 2.15 CISPEP 5 PRO B 173 VAL B 174 0 -5.62 CISPEP 6 LEU B 187 GLN B 188 0 0.70 CISPEP 7 GLN B 188 SER B 189 0 -6.57 CISPEP 8 THR B 190 TYR B 191 0 2.63 CISPEP 9 GLU B 235 ASP B 236 0 4.10 SITE 1 AC1 6 THR A 37 ARG A 87 LEU A 148 LYS A 149 SITE 2 AC1 6 ASN A 151 ARG B 61 CRYST1 55.906 64.685 168.686 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017887 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005928 0.00000