PDB Short entry for 2W9A
HEADER    TRANSFERASE/DNA                         22-JAN-09   2W9A              
TITLE     TERNARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL-                      
TITLE    2 DEOXYGUANOSINE MODIFIED DNA WITH INCOMING DGTP                       
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: DNA POLYMERASE IV;                                         
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: POL IV, DPO4;                                               
COMPND   5 EC: 2.7.7.7;                                                         
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 OTHER_DETAILS: Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS               
COMPND   8  SOLFATARICUS;                                                       
COMPND   9 MOL_ID: 2;                                                           
COMPND  10 MOLECULE: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP                        
COMPND  11  *TP*TP*CP*DOC)-3';                                                  
COMPND  12 CHAIN: P;                                                            
COMPND  13 SYNONYM: PRIMER DNA;                                                 
COMPND  14 OTHER_DETAILS: 14 BASE PRIMER DNA 5'-GGG GGA AGG ATT                 
COMPND  15  C(DOC) -3';                                                         
COMPND  16 MOL_ID: 3;                                                           
COMPND  17 MOLECULE: 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP                      
COMPND  18  *CP*TP*TP*CP*CP*CP*CP*C)-3';                                        
COMPND  19 CHAIN: T;                                                            
COMPND  20 SYNONYM: TEMPLATE DNA;                                               
COMPND  21 OTHER_DETAILS: 18 BASE TEMPLATE DNA 5'-TCA C(O2G)G AAT CCT           
COMPND  22  TCC CCC-3'                                                          
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS;                        
SOURCE   3 ORGANISM_TAXID: 273057;                                              
SOURCE   4 STRAIN: P2;                                                          
SOURCE   5 ATCC: 35092;                                                         
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET22B;                                   
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 MOL_ID: 3;                                                           
SOURCE  13 SYNTHETIC: YES                                                       
KEYWDS    TRANSFERASE DNA COMPLEX, N2-DIMETHYL-G, METAL-BINDING,                
KEYWDS   2 MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, DNA-DIRECTED DNA            
KEYWDS   3 POLYMERASE, DNA DAMAGE, DNA REPAIR, DNA-BINDING,                     
KEYWDS   4 TRANSFERASE, DNA REPLICATION, DNA, DPO4, ADDUCT,                     
KEYWDS   5 CYTOPLASM, MAGNESIUM, POLYMERASE                                     
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    R.L.EOFF,H.ZHANG,I.D.KOSEKOV,C.J.RIZZO,M.EGLI,                        
AUTHOR   2 F.P.GUENGERICH                                                       
REVDAT   2   30-JUN-09 2W9A    1       KEYWDS JRNL   REMARK                     
REVDAT   1   12-MAY-09 2W9A    0                                                
JRNL        AUTH   H.ZHANG,R.L.EOFF,I.D.KOZEKOV,C.J.RIZZO,M.EGLI,               
JRNL        AUTH 2 F.P.GUENGERICH                                               
JRNL        TITL   STRUCTURE-FUNCTION RELATIONSHIPS IN MISCODING BY             
JRNL        TITL 2 SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4:                 
JRNL        TITL 3 GUANINE N2,N2-DIMETHYL SUBSTITUTION PRODUCES                 
JRNL        TITL 4 INACTIVE AND MISCODING POLYMERASE COMPLEXES.                 
JRNL        REF    J.BIOL.CHEM.                  V. 284 17687 2009              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   19542237                                                     
JRNL        DOI    10.1074/JBC.M109014274                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.60 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.2                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,             
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : NULL                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 19.94                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 68406.280                      
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 98.3                           
REMARK   3   NUMBER OF REFLECTIONS             : 16285                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.213                           
REMARK   3   FREE R VALUE                     : 0.246                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.900                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 790                             
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.009                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.55                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.71                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 64.60                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 1767                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2800                       
REMARK   3   BIN FREE R VALUE                    : 0.3360                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 4.60                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 85                           
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.036                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2765                                    
REMARK   3   NUCLEIC ACID ATOMS       : 567                                     
REMARK   3   HETEROGEN ATOMS          : 77                                      
REMARK   3   SOLVENT ATOMS            : 65                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 42.40                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 42.70                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 5.69000                                              
REMARK   3    B22 (A**2) : -3.13000                                             
REMARK   3    B33 (A**2) : -2.56000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.33                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.35                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 30.00                           
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.40                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.40                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.009                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.40                            
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 21.90                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 1.83                            
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.230 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.120 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 1.850 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 2.950 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.35                                                 
REMARK   3   BSOL        : 31.36                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NONE                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : DNA-RNA_REP.PARAM                              
REMARK   3  PARAMETER FILE  3  : DGTP.PARAM                                     
REMARK   3  PARAMETER FILE  4  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  5  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : DNA-RNA.TOP                                    
REMARK   3  TOPOLOGY FILE  3   : DGTP.TOP                                       
REMARK   3  TOPOLOGY FILE  4   : ION.TOP                                        
REMARK   3  TOPOLOGY FILE  5   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED                   
REMARK   4                                                                      
REMARK   4 2W9A COMPLIES WITH FORMAT V. 3.20, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-09.                  
REMARK 100 THE PDBE ID CODE IS EBI-38627.                                       
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 22-JUN-08                          
REMARK 200  TEMPERATURE           (KELVIN) : 110                                
REMARK 200  PH                             : 7.4                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 21-ID                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.97857                            
REMARK 200  MONOCHROMATOR                  : SI(111)                            
REMARK 200  OPTICS                         : MIRRORS                            
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                        
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XDS                                
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 16285                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.55                               
REMARK 200  RESOLUTION RANGE LOW       (A) : 19.94                              
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.0                                
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.2                               
REMARK 200  DATA REDUNDANCY                : 6.8                                
REMARK 200  R MERGE                    (I) : 0.06                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 23.30                              
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.69                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 97.4                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 6.2                                
REMARK 200  R MERGE FOR SHELL          (I) : 0.20                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 5.30                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: PDB ENTRY 2JEF                                       
REMARK 200                                                                      
REMARK 200 REMARK: NONE                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 53.74                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: DPO4\: DNA COMPLEX (1\:1.2 MOLAR         
REMARK 280  RATIO, 150 MICROMOLAR), 20 MM TRIS HCL (PH 7.4), 15%                
REMARK 280  POLYETHYLENE GLYCOL 3350 (W/V), 60 MM SODIUM CHLORIDE, 5            
REMARK 280  MM MAGNESIUM CHLORIDE, 1 MM DGTP.                                   
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z                                                 
REMARK 290       3555   -X+1/2,Y+1/2,-Z                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000       47.33500            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       51.87850            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       47.33500            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       51.87850            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY.  THE REMARK MAY ALSO PROVIDE INFORMATION ON              
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 GENERATING THE BIOMOLECULE                                           
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE:  1                                                      
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 5780 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 20260 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69 KCAL/MOL                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     HIS A    -5                                                      
REMARK 465     HIS A    -4                                                      
REMARK 465     HIS A    -3                                                      
REMARK 465     HIS A    -2                                                      
REMARK 465     HIS A    -1                                                      
REMARK 465     ALA A   343                                                      
REMARK 465     ILE A   344                                                      
REMARK 465     GLY A   345                                                      
REMARK 465     LEU A   346                                                      
REMARK 465     ASP A   347                                                      
REMARK 465     LYS A   348                                                      
REMARK 465     PHE A   349                                                      
REMARK 465     PHE A   350                                                      
REMARK 465     ASP A   351                                                      
REMARK 465     THR A   352                                                      
REMARK 465      DT T     1                                                      
REMARK 465      DC T     2                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A 342    CA   C    O    CB   CG   CD   OE1  OE2              
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DG T   6   O3' -  P   -  O5' ANGL. DEV. =  44.6 DEGREES          
REMARK 500     DG T   6   O3' -  P   -  OP1 ANGL. DEV. = -36.7 DEGREES          
REMARK 500     DG T   6   O3' -  P   -  OP2 ANGL. DEV. = -36.7 DEGREES          
REMARK 500     DG T   6   C3' -  O3' -  P   ANGL. DEV. =   8.4 DEGREES          
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    MET A   1      131.96    171.00                                   
REMARK 500    TYR A  10       43.17     29.39                                   
REMARK 500    PHE A  11      -65.93    -25.41                                   
REMARK 500    ASN A  20       79.84   -150.30                                   
REMARK 500    GLU A  38      -83.13      7.66                                   
REMARK 500    SER A  96      137.48   -176.58                                   
REMARK 500    ASP A 113       36.14    -83.05                                   
REMARK 500    ASP A 117      150.16     77.92                                   
REMARK 500    ARG A 230        2.91    -67.01                                   
REMARK 500    ASN A 234       33.60   -152.99                                   
REMARK 500    ASP A 277     -117.59     64.44                                   
REMARK 500    ASP A 292       36.42    -90.36                                   
REMARK 500    LEU A 293       28.23     46.03                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620  (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;              
REMARK 620   SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                           
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A1003  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 DOC P  14   OP2                                                    
REMARK 620 2 DGT A 594   O1A  97.4                                              
REMARK 620 3 HOH A2039   O    87.5  79.9                                        
REMARK 620 4 HOH A2041   O   114.1 122.4  56.3                                  
REMARK 620 5 HOH A2042   O   178.9  83.1  93.5  66.3                            
REMARK 620 N                    1     2     3     4                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A1000  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HOH A2040   O                                                      
REMARK 620 2 GLU A 106   OE1  85.7                                              
REMARK 620 3 HOH P2009   O    58.8  93.8                                        
REMARK 620 4 ASP A   7   OD1  95.8  91.4 153.5                                  
REMARK 620 5 DGT A 594   O2A  64.5 150.2  71.7  91.3                            
REMARK 620 6 ASP A 105   OD1 158.5 115.7 117.8  82.7  94.1                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A1001  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ASP A   7   OD2                                                    
REMARK 620 2 PHE A   8   O    85.4                                              
REMARK 620 3 ASP A 105   OD2 102.1  84.2                                        
REMARK 620 4 DGT A 594   O3G  83.3 104.3 170.4                                  
REMARK 620 5 DGT A 594   O1B 163.2  94.3  94.6  80.6                            
REMARK 620 6 DGT A 594   O2A  96.0 164.4  80.4  91.2  88.8                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A1002  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 ALA A 181   O                                                      
REMARK 620 2 ILE A 186   O    92.8                                              
REMARK 620 3 HOH A2020   O    83.6 174.7                                        
REMARK 620 4 HOH A2023   O    81.4  79.3  96.3                                  
REMARK 620 5 HOH P2006   O   174.5  81.7 101.9  97.6                            
REMARK 620 N                    1     2     3     4                             
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 594                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE  MG A1000                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE  MG A1001                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE  MG A1002                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC5                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE  MG A1003                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1S0M   RELATED DB: PDB                                   
REMARK 900  CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL                          
REMARK 900   EPOXIDE ADDUCTIN A TERNARY COMPLEX WITH A                          
REMARK 900   DNA POLYMERASE                                                     
REMARK 900 RELATED ID: 2ASL   RELATED DB: PDB                                   
REMARK 900  OXOG-MODIFIED POSTINSERTION BINARY COMPLEX                          
REMARK 900 RELATED ID: 2JEG   RELATED DB: PDB                                   
REMARK 900  THE MOLECULAR BASIS OF SELECTIVITY OF                               
REMARK 900  NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE                      
REMARK 900  O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS                         
REMARK 900  DNA POLYMERASE IV: STEADY-STATE AND PRE-                            
REMARK 900  STEADY-STATE KINETICS AND X-RAY                                     
REMARK 900  CRYSTALLOGRAPHY OF CORRECT AND INCORRECT                            
REMARK 900  PAIRING                                                             
REMARK 900 RELATED ID: 1RYS   RELATED DB: PDB                                   
REMARK 900  REPLICATION OF A CIS-SYN THYMINE DIMER AT                           
REMARK 900   ATOMIC RESOLUTION                                                  
REMARK 900 RELATED ID: 2V4S   RELATED DB: PDB                                   
REMARK 900  Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-                          
REMARK 900  NAPHTHYL-GUANINE ADDUCT IN SYN ORIENTATION                          
REMARK 900 RELATED ID: 2J6T   RELATED DB: PDB                                   
REMARK 900  TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS                          
REMARK 900  DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED                      
REMARK 900   DNA, AND DATP.                                                     
REMARK 900 RELATED ID: 1N56   RELATED DB: PDB                                   
REMARK 900  Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX                             
REMARK 900  WITH DNA CONTAININGABASIC LESION                                    
REMARK 900 RELATED ID: 2W9B   RELATED DB: PDB                                   
REMARK 900  BINARY COMPLEX OF DPO4 BOUND TO N2,N2-                              
REMARK 900  DIMETHYL-DEOXYGUANOSINE MODIFIED DNA                                
REMARK 900 RELATED ID: 1JX4   RELATED DB: PDB                                   
REMARK 900  CRYSTAL STRUCTURE OF A Y-FAMILY DNA                                 
REMARK 900  POLYMERASE IN A TERNARYCOMPLEX WITH DNA                             
REMARK 900  SUBSTRATES AND AN INCOMING NUCLEOTIDE                               
REMARK 900 RELATED ID: 2ATL   RELATED DB: PDB                                   
REMARK 900  UNMODIFIED INSERTION TERNARY COMPLEX                                
REMARK 900 RELATED ID: 2C22   RELATED DB: PDB                                   
REMARK 900  EFFICIENT AND HIGH FIDELITY INCORPORATION OF                        
REMARK 900  DCTP OPPOSITE 7,8-DIHYDRO-8-                                        
REMARK 900  OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA                    
REMARK 900   POLYMERASE DPO4                                                    
REMARK 900 RELATED ID: 2VA2   RELATED DB: PDB                                   
REMARK 900  COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS                        
REMARK 900  DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC                        
REMARK 900   THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE                               
REMARK 900  NUCLEOTIDE IN THE TEMPLATE STRAND                                   
REMARK 900 RELATED ID: 1S97   RELATED DB: PDB                                   
REMARK 900  DPO4 WITH GT MISMATCH                                               
REMARK 900 RELATED ID: 2AGQ   RELATED DB: PDB                                   
REMARK 900  FIDELITY OF DPO4: EFFECT OF METAL IONS,                             
REMARK 900  NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS                          
REMARK 900 RELATED ID: 2AGO   RELATED DB: PDB                                   
REMARK 900  FIDELITY OF DPO4: EFFECT OF METAL IONS,                             
REMARK 900  NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS                          
REMARK 900 RELATED ID: 2JEJ   RELATED DB: PDB                                   
REMARK 900  THE MOLECULAR BASIS OF SELECTIVITY OF                               
REMARK 900  NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE                      
REMARK 900  O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS                         
REMARK 900  DNA POLYMERASE IV: STEADY-STATE AND PRE-                            
REMARK 900  STEADY-STATE KINETICS AND X-RAY                                     
REMARK 900  CRYSTALLOGRAPHY OF CORRECT AND INCORRECT                            
REMARK 900  PAIRING                                                             
REMARK 900 RELATED ID: 2ASJ   RELATED DB: PDB                                   
REMARK 900  OXOG-MODIFIED PREINSERTION BINARY COMPLEX                           
REMARK 900 RELATED ID: 2W9C   RELATED DB: PDB                                   
REMARK 900  TERNARY COMPLEX OF DPO4 BOUND TO N2,N2-                             
REMARK 900  DIMETHYL-DEOXYGUANOSINE MODIFIED DNA WITH                           
REMARK 900  INCOMING DTTP                                                       
REMARK 900 RELATED ID: 2ASD   RELATED DB: PDB                                   
REMARK 900  OXOG-MODIFIED INSERTION TERNARY COMPLEX                             
REMARK 900 RELATED ID: 1JXL   RELATED DB: PDB                                   
REMARK 900  CRYSTAL STRUCTURE OF A Y-FAMILY DNA                                 
REMARK 900  POLYMERASE IN A TERNARYCOMPLEX WITH DNA                             
REMARK 900  SUBSTRATES AND AN INCOMING NUCLEOTIDE                               
REMARK 900 RELATED ID: 1N48   RELATED DB: PDB                                   
REMARK 900  Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX                             
REMARK 900  WITH DNA CONTAININGABASIC LESION                                    
REMARK 900 RELATED ID: 2BQ3   RELATED DB: PDB                                   
REMARK 900  DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS                      
REMARK 900   SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL                            
REMARK 900  STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION                       
REMARK 900   AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1                          
REMARK 900  ,N2-ETHENOGUANINE                                                   
REMARK 900 RELATED ID: 2J6U   RELATED DB: PDB                                   
REMARK 900  TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS                          
REMARK 900  DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED                      
REMARK 900   DNA, AND DGTP.                                                     
REMARK 900 RELATED ID: 2UVU   RELATED DB: PDB                                   
REMARK 900  CRYSTAL STRUCTURES OF MUTANT DPO4 DNA                               
REMARK 900  POLYMERASES WITH 8-OXOG CONTAINING DNA                              
REMARK 900  TEMPLATE-PRIMER CONSTRUCTS                                          
REMARK 900 RELATED ID: 2AGP   RELATED DB: PDB                                   
REMARK 900  FIDELITY OF DPO4: EFFECT OF METAL IONS,                             
REMARK 900  NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS                          
REMARK 900 RELATED ID: 1S0N   RELATED DB: PDB                                   
REMARK 900  SNAPSHOTS OF REPLICATION THROUGH AN ABASIC                          
REMARK 900  LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION                       
REMARK 900   AND FRAMESHIFT                                                     
REMARK 900 RELATED ID: 2C2R   RELATED DB: PDB                                   
REMARK 900  EFFICIENT AND HIGH FIDELITY INCORPORATION OF                        
REMARK 900  DCTP OPPOSITE 7,8-DIHYDRO-8-                                        
REMARK 900  OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA                    
REMARK 900   POLYMERASE DPO4                                                    
REMARK 900 RELATED ID: 2W8L   RELATED DB: PDB                                   
REMARK 900  Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-                          
REMARK 900  NAPHTHYL-GUANINE ADDUCT IN ANTI ORIENTATION                         
REMARK 900 RELATED ID: 2JEF   RELATED DB: PDB                                   
REMARK 900  THE MOLECULAR BASIS OF SELECTIVITY OF                               
REMARK 900  NUCLEOTIDE TRIPHOSPHATE INCORPORATION OPPOSITE                      
REMARK 900  O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS                         
REMARK 900  DNA POLYMERASE IV: STEADY-STATE AND PRE-                            
REMARK 900  STEADY-STATE AND X-RAY CRYSTALLOGRAPHY OF                           
REMARK 900  CORRECT AND INCORRECT PAIRING                                       
REMARK 900 RELATED ID: 1S0O   RELATED DB: PDB                                   
REMARK 900  SNAPSHOTS OF REPLICATION THROUGH AN ABASIC                          
REMARK 900  LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION                       
REMARK 900   AND FRAMESHIFT                                                     
REMARK 900 RELATED ID: 2UVW   RELATED DB: PDB                                   
REMARK 900  CRYSTAL STRUCTURES OF MUTANT DPO4 DNA                               
REMARK 900  POLYMERASES WITH 8-OXOG CONTAINING DNA                              
REMARK 900  TEMPLATE-PRIMER CONSTRUCTS                                          
REMARK 900 RELATED ID: 2BQR   RELATED DB: PDB                                   
REMARK 900  DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS                      
REMARK 900   SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL                            
REMARK 900  STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION                       
REMARK 900   AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1                          
REMARK 900  ,N2-ETHENOGUANINE                                                   
REMARK 900 RELATED ID: 2JEI   RELATED DB: PDB                                   
REMARK 900  THE MOLECULAR BASIS OF SELECTIVITY OF                               
REMARK 900  NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE                      
REMARK 900  O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS                         
REMARK 900  DNA POLYMERASE IV: STEADY-STATE AND PRE-                            
REMARK 900  STEADY-STATE KINETICS AND X-RAY                                     
REMARK 900  CRYSTALLOGRAPHY OF CORRECT AND INCORRECT                            
REMARK 900  PAIRING                                                             
REMARK 900 RELATED ID: 2BQU   RELATED DB: PDB                                   
REMARK 900  DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS                      
REMARK 900   SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL                            
REMARK 900  STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION                       
REMARK 900   AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1                          
REMARK 900  ,N2-ETHENOGUANINE                                                   
REMARK 900 RELATED ID: 2AU0   RELATED DB: PDB                                   
REMARK 900  UNMODIFIED PREINSERTION BINARY COMPLEX                              
REMARK 900 RELATED ID: 1S9F   RELATED DB: PDB                                   
REMARK 900  DPO WITH AT MATCHED                                                 
REMARK 900 RELATED ID: 2C28   RELATED DB: PDB                                   
REMARK 900  EFFICIENT AND HIGH FIDELITY INCORPORATION OF                        
REMARK 900  DCTP OPPOSITE 7,8-DIHYDRO-8-                                        
REMARK 900  OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA                    
REMARK 900   POLYMERASE DPO4                                                    
REMARK 900 RELATED ID: 2V9W   RELATED DB: PDB                                   
REMARK 900  COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS                        
REMARK 900  DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC                        
REMARK 900   THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE                               
REMARK 900  NUCLEOTIDE IN THE TEMPLATE STRAND                                   
REMARK 900 RELATED ID: 2V4R   RELATED DB: PDB                                   
REMARK 900  NON-PRODUCTIVE COMPLEX OF THE Y-FAMILY DNA                          
REMARK 900   POLYMERASE DPO4 WITH DGTP SKIPPING THE                             
REMARK 900  M1DG ADDUCT TO PAIR WITH THE NEXT TEMPLATE                          
REMARK 900   CYTOSINE                                                           
REMARK 900 RELATED ID: 2C2E   RELATED DB: PDB                                   
REMARK 900  EFFICIENT AND HIGH FIDELITY INCORPORATION OF                        
REMARK 900  DCTP OPPOSITE 7,8-DIHYDRO-8-                                        
REMARK 900  OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA                    
REMARK 900   POLYMERASE DPO4                                                    
REMARK 900 RELATED ID: 1RYR   RELATED DB: PDB                                   
REMARK 900  REPLICATION OF A CIS-SYN THYMINE DIMER AT                           
REMARK 900   ATOMIC RESOLUTION                                                  
REMARK 900 RELATED ID: 2UVV   RELATED DB: PDB                                   
REMARK 900  CRYSTAL STRUCTURES OF MUTANT DPO4 DNA                               
REMARK 900  POLYMERASES WITH 8-OXOG CONTAINING DNA                              
REMARK 900  TEMPLATE-PRIMER CONSTRUCTS                                          
REMARK 900 RELATED ID: 2C2D   RELATED DB: PDB                                   
REMARK 900  EFFICIENT AND HIGH FIDELITY INCORPORATION OF                        
REMARK 900  DCTP OPPOSITE 7,8-DIHYDRO-8-                                        
REMARK 900  OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA                    
REMARK 900   POLYMERASE DPO4                                                    
REMARK 900 RELATED ID: 2V4Q   RELATED DB: PDB                                   
REMARK 900  POST-INSERTION COMPLEX OF THE Y-FAMILY DNA                          
REMARK 900   POLYMERASE DPO4 WITH M1DG CONTAINING                               
REMARK 900  TEMPLATE DNA                                                        
REMARK 900 RELATED ID: 1S10   RELATED DB: PDB                                   
REMARK 900  SNAPSHOTS OF REPLICATION THROUGH AN ABASIC                          
REMARK 900  LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION                       
REMARK 900   AND FRAMESHIFT                                                     
REMARK 900 RELATED ID: 2J6S   RELATED DB: PDB                                   
REMARK 900  TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS                          
REMARK 900  DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED                      
REMARK 900   DNA, AND DATP.                                                     
REMARK 900 RELATED ID: 2BR0   RELATED DB: PDB                                   
REMARK 900  DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS                      
REMARK 900   SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL                            
REMARK 900  STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION                       
REMARK 900   AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1                          
REMARK 900  ,N2-ETHENOGUANINE                                                   
REMARK 900 RELATED ID: 2UVR   RELATED DB: PDB                                   
REMARK 900  CRYSTAL STRUCTURES OF MUTANT DPO4 DNA                               
REMARK 900  POLYMERASES WITH 8-OXOG CONTAINING DNA                              
REMARK 900  TEMPLATE-PRIMER CONSTRUCTS                                          
REMARK 900 RELATED ID: 2VA3   RELATED DB: PDB                                   
REMARK 900  COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS                        
REMARK 900  DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC                        
REMARK 900   THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE                               
REMARK 900  NUCLEOTIDE IN THE TEMPLATE STRAND                                   
REMARK 900 RELATED ID: 2W8K   RELATED DB: PDB                                   
REMARK 900  Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-                          
REMARK 900  NAPHTHYL-GUANINE ADDUCT IN SYN ORIENTATION                          
REMARK 900 RELATED ID: 2V4T   RELATED DB: PDB                                   
REMARK 900  Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2-                          
REMARK 900  NAPHTHYL-GUANINE ADDUCT IN ANTI ORIENTATION                         
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 ENGINEERED HEXA-HISTIDINE TAG AND LAST 11 RESIDUES ARE               
REMARK 999 DISORDERED                                                           
DBREF  2W9A A   -5     0  PDB    2W9A     2W9A            -5      0             
DBREF  2W9A A    1   352  UNP    Q97W02   DPO42_SULSO      1    352             
DBREF  2W9A P    1    14  PDB    2W9A     2W9A             1     14             
DBREF  2W9A T    1    18  PDB    2W9A     2W9A             1     18             
SEQRES   1 A  358  HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP          
SEQRES   2 A  358  PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN          
SEQRES   3 A  358  PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE          
SEQRES   4 A  358  SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA          
SEQRES   5 A  358  ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE          
SEQRES   6 A  358  PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL          
SEQRES   7 A  358  TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER          
SEQRES   8 A  358  SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS          
SEQRES   9 A  358  ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE          
SEQRES  10 A  358  SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU          
SEQRES  11 A  358  GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS          
SEQRES  12 A  358  ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE          
SEQRES  13 A  358  ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE          
SEQRES  14 A  358  LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG          
SEQRES  15 A  358  GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE          
SEQRES  16 A  358  THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU          
SEQRES  17 A  358  VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY          
SEQRES  18 A  358  MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU          
SEQRES  19 A  358  ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL          
SEQRES  20 A  358  ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN          
SEQRES  21 A  358  SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG          
SEQRES  22 A  358  ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE          
SEQRES  23 A  358  PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU          
SEQRES  24 A  358  ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE          
SEQRES  25 A  358  SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU          
SEQRES  26 A  358  GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG          
SEQRES  27 A  358  ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY          
SEQRES  28 A  358  LEU ASP LYS PHE PHE ASP THR                                  
SEQRES   1 P   14   DG  DG  DG  DG  DG  DA  DA  DG  DG  DA  DT  DT  DC          
SEQRES   2 P   14  DOC                                                          
SEQRES   1 T   18   DT  DC  DA  DC O2G  DG  DA  DA  DT  DC  DC  DT  DT          
SEQRES   2 T   18   DC  DC  DC  DC  DC                                          
MODRES 2W9A DOC P   14   DC  2,3-DIDEOXYCYTOSINE-MONOPHOSPHATE                  
MODRES 2W9A O2G T    5   DG  N2-NAPHTHALENE DEOXYGUANOSINE                      
HET    DGT  A 594      31                                                       
HET     MG  A1000       1                                                       
HET     MG  A1001       1                                                       
HET     MG  A1002       1                                                       
HET     MG  A1003       1                                                       
HET    DOC  P  14      18                                                       
HET    O2G  T   5      24                                                       
HETNAM     DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE                                
HETNAM     DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE                           
HETNAM     O2G 2'-DEOXY-N,N-DIMETHYL-5'-O-[OXIDO(OXO)                           
HETNAM   2 O2G  PHOSPHONIO]GUANOSINE                                            
HETNAM      MG MAGNESIUM ION                                                    
FORMUL   4  DGT    C10 H16 N5 O13 P3                                            
FORMUL   5  DOC    C9 H14 N3 O6 P                                               
FORMUL   6  O2G    C12 H18 N5 O7 P1                                             
FORMUL   7   MG    4(MG 2+)                                                     
FORMUL   8  HOH   *65(H2 O1)                                                    
HELIX    1   1 TYR A   10  ASN A   20  1                                  11    
HELIX    2   2 PRO A   21  LYS A   24  5                                   4    
HELIX    3   3 ASN A   47  LYS A   52  1                                   6    
HELIX    4   4 PRO A   60  LEU A   68  1                                   9    
HELIX    5   5 ARG A   77  ARG A   93  1                                  17    
HELIX    6   6 GLU A   94  SER A   96  5                                   3    
HELIX    7   7 SER A  112  VAL A  115  5                                   4    
HELIX    8   8 ASP A  117  GLU A  136  1                                  20    
HELIX    9   9 ASN A  147  LYS A  159  1                                  13    
HELIX   10  10 ASP A  167  LEU A  178  1                                  12    
HELIX   11  11 ILE A  180  VAL A  183  5                                   4    
HELIX   12  12 GLY A  187  LYS A  196  1                                  10    
HELIX   13  13 LEU A  202  ILE A  208  5                                   7    
HELIX   14  14 GLU A  209  GLY A  218  1                                  10    
HELIX   15  15 GLY A  218  ARG A  230  1                                  13    
HELIX   16  16 ASN A  257  ASP A  277  1                                  21    
HELIX   17  17 SER A  307  ASP A  326  1                                  20    
SHEET    1  AA 5 ILE A  99  ILE A 101  0                                        
SHEET    2  AA 5 GLU A 106  ASP A 110 -1  O  TYR A 108   N  GLU A 100           
SHEET    3  AA 5 VAL A   3  PHE A   8 -1  O  LEU A   4   N  LEU A 109           
SHEET    4  AA 5 VAL A 140  SER A 145 -1  O  THR A 141   N  ASP A   7           
SHEET    5  AA 5 ILE A 163  VAL A 165  1  O  LYS A 164   N  ILE A 144           
SHEET    1  AB 3 GLY A  41  ALA A  46  0                                        
SHEET    2  AB 3 VAL A  28  PHE A  33 -1  O  VAL A  30   N  ALA A  44           
SHEET    3  AB 3 VAL A  72  PRO A  75  1  O  VAL A  72   N  VAL A  29           
SHEET    1  AC 4 SER A 244  SER A 255  0                                        
SHEET    2  AC 4 ILE A 330  PHE A 340 -1  O  ILE A 330   N  SER A 255           
SHEET    3  AC 4 PRO A 281  THR A 290 -1  N  LYS A 282   O  SER A 338           
SHEET    4  AC 4 ILE A 295  THR A 301 -1  O  VAL A 296   N  ALA A 288           
LINK        MG    MG A1000                 O   HOH A2040     1555   1555  2.16  
LINK        MG    MG A1000                 OE1 GLU A 106     1555   1555  2.60  
LINK        MG    MG A1000                 O   HOH P2009     1555   1555  2.59  
LINK        MG    MG A1000                 OD1 ASP A   7     1555   1555  2.12  
LINK        MG    MG A1000                 O2A DGT A 594     1555   1555  2.31  
LINK        MG    MG A1000                 OD1 ASP A 105     1555   1555  2.30  
LINK        MG    MG A1001                 O2A DGT A 594     1555   1555  2.75  
LINK        MG    MG A1001                 O1B DGT A 594     1555   1555  1.83  
LINK        MG    MG A1001                 O3G DGT A 594     1555   1555  2.39  
LINK        MG    MG A1001                 OD2 ASP A 105     1555   1555  2.31  
LINK        MG    MG A1001                 O   PHE A   8     1555   1555  2.25  
LINK        MG    MG A1001                 OD2 ASP A   7     1555   1555  2.11  
LINK        MG    MG A1002                 O   ALA A 181     1555   1555  2.39  
LINK        MG    MG A1002                 O   ILE A 186     1555   1555  2.46  
LINK        MG    MG A1002                 O   HOH P2006     1555   1555  2.40  
LINK        MG    MG A1002                 O   HOH A2023     1555   1555  2.19  
LINK        MG    MG A1002                 O   HOH A2020     1555   1555  2.18  
LINK        MG    MG A1003                 O   HOH A2042     1555   1555  2.21  
LINK        MG    MG A1003                 O   HOH A2041     1555   1555  2.73  
LINK        MG    MG A1003                 O   HOH A2039     1555   1555  2.39  
LINK        MG    MG A1003                 O1A DGT A 594     1555   1555  2.06  
LINK        MG    MG A1003                 OP2 DOC P  14     1555   1555  2.52  
LINK         O3'  DC P  13                 P   DOC P  14     1555   1555  1.58  
LINK         O3'  DC T   4                 P   O2G T   5     1555   1555  1.58  
LINK         O3' O2G T   5                 P    DG T   6     1555   1555  1.60  
CISPEP   1 LYS A  159    PRO A  160          0         0.14                     
SITE     1 AC1 25 ASP A   7  PHE A   8  ASP A   9  TYR A  10                    
SITE     2 AC1 25 PHE A  11  TYR A  12  ALA A  44  THR A  45                    
SITE     3 AC1 25 TYR A  48  ARG A  51  MET A  76  ASP A 105                    
SITE     4 AC1 25 LYS A 159   MG A1000   MG A1001   MG A1003                    
SITE     5 AC1 25 HOH A2002  HOH A2038  HOH A2039  HOH A2040                    
SITE     6 AC1 25 HOH A2042  DOC P  14  HOH P2009   DC T   4                    
SITE     7 AC1 25 O2G T   5                                                     
SITE     1 AC2  6 ASP A   7  ASP A 105  GLU A 106  DGT A 594                    
SITE     2 AC2  6 HOH A2040  HOH P2009                                          
SITE     1 AC3  4 ASP A   7  PHE A   8  ASP A 105  DGT A 594                    
SITE     1 AC4  5 ALA A 181  ILE A 186  HOH A2020  HOH A2023                    
SITE     2 AC4  5 HOH P2006                                                     
SITE     1 AC5  6 DGT A 594  HOH A2039  HOH A2041  HOH A2042                    
SITE     2 AC5  6  DC P  13  DOC P  14                                          
CRYST1   94.670  103.757   52.750  90.00  90.00  90.00 P 21 21 2     4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010563  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.009638  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.018957        0.00000