PDB Short entry for 2WBU HEADER TRANSCRIPTION/DNA 05-MAR-09 2WBU TITLE CRYSTAL STRUCTURE OF THE ZINC FINGER DOMAIN OF KLF4 BOUND TO ITS TITLE 2 TARGET DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: KRUEPPEL-LIKE FACTOR 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 396-483; COMPND 5 SYNONYM: GUT-ENRICHED KRUEPPEL-LIKE FACTOR, EPITHELIAL ZINC FINGER COMPND 6 PROTEIN EZF; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*DGP*DAP*DGP*DGP*DCP*DGP*DTP* DGP*DGP*DC)-3'; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*DGP*DCP*DCP*DAP*DCP*DGP*DCP* DCP*DTP*DC)-3'; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQLINKH; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES KEYWDS TRANSCRIPTION-DNA COMPLEX, NUCLEUS, ACTIVATOR, DNA-BINDING, ZINC- KEYWDS 2 FINGER, TRANSCRIPTION, METAL-BINDING, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHUETZ,G.ZOCHER,D.CARSTANJEN,U.HEINEMANN REVDAT 4 13-DEC-23 2WBU 1 REMARK LINK REVDAT 3 05-OCT-11 2WBU 1 TITLE SOURCE JRNL REVDAT 2 13-JUL-11 2WBU 1 VERSN REVDAT 1 07-APR-10 2WBU 0 JRNL AUTH A.SCHUETZ,D.NANA,C.ROSE,G.ZOCHER,M.MILANOVIC,J.KOENIGSMANN, JRNL AUTH 2 R.BLASIG,U.HEINEMANN,D.CARSTANJEN JRNL TITL THE STRUCTURE OF THE KLF4 DNA-BINDING DOMAIN LINKS TO JRNL TITL 2 SELF-RENEWAL AND MACROPHAGE DIFFERENTIATION. JRNL REF CELL.MOL.LIFE SCI. V. 68 3121 2011 JRNL REFN ISSN 1420-682X JRNL PMID 21290164 JRNL DOI 10.1007/S00018-010-0618-X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 5773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 410 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.4610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 708 REMARK 3 NUCLEIC ACID ATOMS : 404 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.22000 REMARK 3 B22 (A**2) : 2.22000 REMARK 3 B33 (A**2) : -4.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.530 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.317 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.237 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.518 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1184 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1676 ; 1.355 ; 2.346 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 84 ; 6.698 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 39 ;33.399 ;20.513 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 123 ;20.050 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;30.210 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 170 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 784 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 421 ; 0.550 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 670 ; 1.080 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 763 ; 1.900 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1006 ; 2.663 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 399 A 424 REMARK 3 ORIGIN FOR THE GROUP (A): -25.8500 -13.9380 1.2970 REMARK 3 T TENSOR REMARK 3 T11: 0.0491 T22: 0.1102 REMARK 3 T33: 0.2204 T12: -0.0369 REMARK 3 T13: 0.0377 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 5.1011 L22: 13.4205 REMARK 3 L33: 8.0536 L12: -2.2754 REMARK 3 L13: 2.7793 L23: 1.5876 REMARK 3 S TENSOR REMARK 3 S11: 0.0867 S12: 0.0200 S13: -0.5257 REMARK 3 S21: -0.3828 S22: -0.0583 S23: 0.4565 REMARK 3 S31: 0.0138 S32: -0.5908 S33: -0.0284 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 425 A 455 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4310 -3.1860 10.5010 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0626 REMARK 3 T33: 0.3240 T12: -0.0121 REMARK 3 T13: -0.0106 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 4.0513 L22: 2.7816 REMARK 3 L33: 5.1436 L12: 0.4908 REMARK 3 L13: -1.0259 L23: 2.5129 REMARK 3 S TENSOR REMARK 3 S11: 0.1585 S12: -0.2357 S13: -0.0983 REMARK 3 S21: 0.2245 S22: -0.0161 S23: -0.5396 REMARK 3 S31: 0.0949 S32: 0.2879 S33: -0.1424 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 456 A 483 REMARK 3 ORIGIN FOR THE GROUP (A): -22.3880 12.3960 21.3560 REMARK 3 T TENSOR REMARK 3 T11: 0.0980 T22: 0.1468 REMARK 3 T33: 0.2251 T12: 0.0669 REMARK 3 T13: 0.0021 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 5.3605 L22: 10.0431 REMARK 3 L33: 4.1332 L12: -4.9505 REMARK 3 L13: -2.9040 L23: 4.9919 REMARK 3 S TENSOR REMARK 3 S11: -0.3096 S12: -0.3794 S13: 0.5647 REMARK 3 S21: 0.3853 S22: 0.4469 S23: -0.4012 REMARK 3 S31: -0.0477 S32: 0.0219 S33: -0.1373 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 10 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4770 -1.4490 10.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.0088 T22: 0.0243 REMARK 3 T33: 0.0354 T12: 0.0056 REMARK 3 T13: 0.0027 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.5304 L22: 3.1149 REMARK 3 L33: 10.7215 L12: -0.0782 REMARK 3 L13: 1.3722 L23: -2.2030 REMARK 3 S TENSOR REMARK 3 S11: 0.0180 S12: -0.0191 S13: -0.1254 REMARK 3 S21: 0.0003 S22: 0.1091 S23: 0.0691 REMARK 3 S31: 0.0542 S32: -0.3137 S33: -0.1272 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 10 REMARK 3 ORIGIN FOR THE GROUP (A): -24.6920 -0.0790 10.6440 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0678 REMARK 3 T33: 0.0463 T12: -0.0104 REMARK 3 T13: -0.0137 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.0100 L22: 0.7135 REMARK 3 L33: 12.1590 L12: 0.0281 REMARK 3 L13: -3.9394 L23: -0.3498 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.0676 S13: 0.0110 REMARK 3 S21: -0.0228 S22: -0.1466 S23: 0.1190 REMARK 3 S31: -0.0004 S32: -0.3075 S33: 0.1661 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1290038959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6277 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.40 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WBS REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27 % PEG 3350, 0.2 M NAACETATE, 0.1 M REMARK 280 TRIS-HCL PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.51350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.13750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.13750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 98.27025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.13750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.13750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.75675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.13750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.13750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 98.27025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.13750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.13750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.75675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.51350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 394 REMARK 465 SER A 395 REMARK 465 ARG A 396 REMARK 465 THR A 397 REMARK 465 ALA A 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 4 O3' DG B 4 C3' -0.048 REMARK 500 DC B 5 O3' DC B 5 C3' -0.046 REMARK 500 DG B 9 O3' DG B 9 C3' -0.037 REMARK 500 DG C 1 O3' DG C 1 C3' -0.038 REMARK 500 DC C 2 O3' DC C 2 C3' -0.037 REMARK 500 DC C 3 O3' DC C 3 C3' -0.049 REMARK 500 DA C 4 O3' DA C 4 C3' -0.064 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 5 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC B 5 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG B 8 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DG C 1 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC C 8 C5' - C4' - C3' ANGL. DEV. = 7.3 DEGREES REMARK 500 DC C 10 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 403 45.30 -91.48 REMARK 500 ALA A 405 -119.08 58.44 REMARK 500 LYS A 413 118.12 -167.01 REMARK 500 GLU A 427 128.07 -35.55 REMARK 500 ASP A 435 124.37 -39.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1486 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 402 SG REMARK 620 2 CYS A 407 SG 115.0 REMARK 620 3 HIS A 420 NE2 104.0 111.4 REMARK 620 4 HIS A 424 NE2 114.6 111.2 99.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1485 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 432 SG REMARK 620 2 CYS A 437 SG 107.9 REMARK 620 3 HIS A 450 NE2 116.4 105.6 REMARK 620 4 HIS A 454 NE2 111.6 117.1 98.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1484 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 462 SG REMARK 620 2 CYS A 465 SG 113.8 REMARK 620 3 HIS A 478 NE2 103.0 112.9 REMARK 620 4 HIS A 482 NE2 105.7 116.3 103.8 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1484 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1486 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WBS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE IN COMPLEX WITH DNA DBREF 2WBU A 394 395 PDB 2WBU 2WBU 394 395 DBREF 2WBU A 396 483 UNP Q60793 KLF4_MOUSE 396 483 DBREF 2WBU B 1 10 PDB 2WBU 2WBU 1 10 DBREF 2WBU C 1 10 PDB 2WBU 2WBU 1 10 SEQRES 1 A 90 GLY SER ARG THR ALA THR HIS THR CYS ASP TYR ALA GLY SEQRES 2 A 90 CYS GLY LYS THR TYR THR LYS SER SER HIS LEU LYS ALA SEQRES 3 A 90 HIS LEU ARG THR HIS THR GLY GLU LYS PRO TYR HIS CYS SEQRES 4 A 90 ASP TRP ASP GLY CYS GLY TRP LYS PHE ALA ARG SER ASP SEQRES 5 A 90 GLU LEU THR ARG HIS TYR ARG LYS HIS THR GLY HIS ARG SEQRES 6 A 90 PRO PHE GLN CYS GLN LYS CYS ASP ARG ALA PHE SER ARG SEQRES 7 A 90 SER ASP HIS LEU ALA LEU HIS MET LYS ARG HIS PHE SEQRES 1 B 10 DG DA DG DG DC DG DT DG DG DC SEQRES 1 C 10 DG DC DC DA DC DG DC DC DT DC HET ZN A1484 1 HET ZN A1485 1 HET ZN A1486 1 HETNAM ZN ZINC ION FORMUL 4 ZN 3(ZN 2+) FORMUL 7 HOH *21(H2 O) HELIX 1 1 SER A 414 THR A 425 1 12 HELIX 2 2 SER A 444 THR A 455 1 12 HELIX 3 3 SER A 472 LYS A 480 1 9 SHEET 1 AA 2 HIS A 400 CYS A 402 0 SHEET 2 AA 2 LYS A 409 TYR A 411 -1 O TYR A 411 N HIS A 400 SHEET 1 AB 2 TYR A 430 CYS A 432 0 SHEET 2 AB 2 TRP A 439 PHE A 441 -1 O PHE A 441 N TYR A 430 SHEET 1 AC 2 PHE A 460 CYS A 462 0 SHEET 2 AC 2 ARG A 467 PHE A 469 -1 O PHE A 469 N PHE A 460 LINK SG CYS A 402 ZN ZN A1486 1555 1555 2.11 LINK SG CYS A 407 ZN ZN A1486 1555 1555 2.23 LINK NE2 HIS A 420 ZN ZN A1486 1555 1555 2.01 LINK NE2 HIS A 424 ZN ZN A1486 1555 1555 2.11 LINK SG CYS A 432 ZN ZN A1485 1555 1555 2.12 LINK SG CYS A 437 ZN ZN A1485 1555 1555 2.19 LINK NE2 HIS A 450 ZN ZN A1485 1555 1555 2.24 LINK NE2 HIS A 454 ZN ZN A1485 1555 1555 2.07 LINK SG CYS A 462 ZN ZN A1484 1555 1555 2.15 LINK SG CYS A 465 ZN ZN A1484 1555 1555 2.08 LINK NE2 HIS A 478 ZN ZN A1484 1555 1555 1.80 LINK NE2 HIS A 482 ZN ZN A1484 1555 1555 2.05 SITE 1 AC1 4 CYS A 462 CYS A 465 HIS A 478 HIS A 482 SITE 1 AC2 4 CYS A 432 CYS A 437 HIS A 450 HIS A 454 SITE 1 AC3 4 CYS A 402 CYS A 407 HIS A 420 HIS A 424 CRYST1 50.275 50.275 131.027 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007632 0.00000