PDB Short entry for 2WIZ HEADER HYDROLASE/DNA 18-MAY-09 2WIZ TITLE CRYSTAL STRUCTURES OF HOLLIDAY JUNCTION RESOLVASES FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS BOUND TO DNA SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAEAL HJC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-136; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: N-TERMINUS CONTAINS EXTRA RESIDUES AS A RESULT OF COMPND 7 CLONING PROCEDURE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HALF-JUNCTION; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: SYNTHESIZED; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: HALF-JUNCTION; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: SYNTHESIZED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS DSM 4304; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 ATCC: 49558; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM12; SOURCE 9 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 OTHER_DETAILS: SYNTHESIZED BY METABION GMBH, MARTINSRIED, GERMANY; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630; SOURCE 19 OTHER_DETAILS: SYNTHESIZED BY METABION GMBH, MARTINSRIED, GERMANY KEYWDS HYDROLASE DNA COMPLEX, TYPE II RESTRICTION ENDONUCLEASE, HOLLIDAY KEYWDS 2 JUNCTION RESOLVASE, HYDROLASE, DNA BINDING PROTEIN, HYDROLASE-DNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.CAROLIS,C.KOEHLER,C.SAUTER,J.BASQUIN,D.SUCK,I.TOEROE REVDAT 3 13-DEC-23 2WIZ 1 REMARK REVDAT 2 30-SEP-15 2WIZ 1 SOURCE REMARK VERSN REVDAT 1 26-MAY-09 2WIZ 0 JRNL AUTH C.CAROLIS,C.KOEHLER,C.SAUTER,J.BASQUIN,D.SUCK,I.TOEROE JRNL TITL CRYSTAL STRUCTURES OF HOLLIDAY JUNCTION RESOLVASES FROM JRNL TITL 2 ARCHAEOGLOBUS FULGIDUS BOUND TO DNA SUBSTRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 8408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5621 - 4.7568 0.98 2869 146 0.1893 0.2665 REMARK 3 2 4.7568 - 3.7771 0.97 2686 128 0.1935 0.2691 REMARK 3 3 3.7771 - 3.3001 0.90 2450 129 0.2750 0.3513 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 92.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 119.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.46450 REMARK 3 B22 (A**2) : -2.46450 REMARK 3 B33 (A**2) : 4.92900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3033 REMARK 3 ANGLE : 1.050 4138 REMARK 3 CHIRALITY : 0.053 453 REMARK 3 PLANARITY : 0.004 391 REMARK 3 DIHEDRAL : 22.099 1142 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 6:27) REMARK 3 ORIGIN FOR THE GROUP (A): 50.9972 -33.9319 -7.3414 REMARK 3 T TENSOR REMARK 3 T11: 0.6146 T22: 0.8148 REMARK 3 T33: 0.7394 T12: -0.1771 REMARK 3 T13: -0.0384 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 1.9133 L22: 3.5502 REMARK 3 L33: 1.6077 L12: -0.5310 REMARK 3 L13: -0.6601 L23: 2.2531 REMARK 3 S TENSOR REMARK 3 S11: 0.7146 S12: 0.2766 S13: 0.0367 REMARK 3 S21: -2.1760 S22: -0.7871 S23: -1.2151 REMARK 3 S31: -1.2205 S32: 0.1710 S33: 0.0015 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 28:35) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6458 -42.6841 -8.6325 REMARK 3 T TENSOR REMARK 3 T11: 1.9460 T22: 1.7694 REMARK 3 T33: 2.3297 T12: -0.0706 REMARK 3 T13: -0.3500 T23: 0.1970 REMARK 3 L TENSOR REMARK 3 L11: 0.1003 L22: 0.5168 REMARK 3 L33: 0.2550 L12: 0.1294 REMARK 3 L13: 0.0651 L23: -0.2782 REMARK 3 S TENSOR REMARK 3 S11: 2.5699 S12: -1.3260 S13: -0.4571 REMARK 3 S21: -1.2909 S22: -0.1163 S23: -0.4708 REMARK 3 S31: -0.1187 S32: -0.1224 S33: 0.0251 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 36:128) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0319 -31.8638 4.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.4024 T22: 0.5755 REMARK 3 T33: 0.4567 T12: -0.0143 REMARK 3 T13: -0.0294 T23: 0.1034 REMARK 3 L TENSOR REMARK 3 L11: 5.4910 L22: 6.6257 REMARK 3 L33: 7.3801 L12: -0.1293 REMARK 3 L13: -2.2192 L23: 3.0076 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: -0.3276 S13: -0.0017 REMARK 3 S21: 0.2806 S22: -0.0541 S23: 0.6422 REMARK 3 S31: -0.1214 S32: -0.3431 S33: -0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 6:32) REMARK 3 ORIGIN FOR THE GROUP (A): 40.3400 -50.1069 -11.6594 REMARK 3 T TENSOR REMARK 3 T11: 0.6651 T22: 1.1721 REMARK 3 T33: 0.9945 T12: -0.0801 REMARK 3 T13: -0.0994 T23: 0.1637 REMARK 3 L TENSOR REMARK 3 L11: 1.0987 L22: 1.5312 REMARK 3 L33: 1.6241 L12: -0.6446 REMARK 3 L13: -0.7011 L23: 1.6372 REMARK 3 S TENSOR REMARK 3 S11: -0.2674 S12: -0.0427 S13: -0.4426 REMARK 3 S21: -0.3979 S22: -0.8315 S23: 0.1195 REMARK 3 S31: -1.1749 S32: -1.2543 S33: -0.0008 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 33:118) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6745 -57.8344 -14.0842 REMARK 3 T TENSOR REMARK 3 T11: 0.7090 T22: 0.7569 REMARK 3 T33: 0.6974 T12: -0.0971 REMARK 3 T13: -0.1199 T23: 0.1362 REMARK 3 L TENSOR REMARK 3 L11: 4.4257 L22: 6.2493 REMARK 3 L33: 7.2009 L12: 0.7969 REMARK 3 L13: -0.7346 L23: 2.1978 REMARK 3 S TENSOR REMARK 3 S11: -0.5689 S12: 0.2437 S13: -0.1263 REMARK 3 S21: -0.3306 S22: 0.2390 S23: -0.0968 REMARK 3 S31: 0.7731 S32: 0.3956 S33: 0.0006 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 119:127) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0578 -63.4702 -1.9351 REMARK 3 T TENSOR REMARK 3 T11: 1.6442 T22: 1.0520 REMARK 3 T33: 1.1210 T12: -0.0379 REMARK 3 T13: -0.0293 T23: 0.2976 REMARK 3 L TENSOR REMARK 3 L11: 0.4764 L22: 0.2212 REMARK 3 L33: 0.4712 L12: 0.0103 REMARK 3 L13: -0.3976 L23: -0.1777 REMARK 3 S TENSOR REMARK 3 S11: 0.7841 S12: 1.1542 S13: -0.6617 REMARK 3 S21: 3.6128 S22: 1.2142 S23: -0.3642 REMARK 3 S31: 2.7671 S32: -0.8396 S33: -0.0075 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN C AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1539 -46.5477 -35.1708 REMARK 3 T TENSOR REMARK 3 T11: 2.7603 T22: 2.1909 REMARK 3 T33: 1.8236 T12: 0.1016 REMARK 3 T13: -0.0973 T23: -0.1253 REMARK 3 L TENSOR REMARK 3 L11: 0.2583 L22: 0.2283 REMARK 3 L33: 0.1966 L12: -0.2812 REMARK 3 L13: 0.2457 L23: -0.1725 REMARK 3 S TENSOR REMARK 3 S11: 0.1681 S12: 1.0341 S13: -1.5434 REMARK 3 S21: 3.2357 S22: -1.1224 S23: -0.7809 REMARK 3 S31: 2.3312 S32: -0.2656 S33: 0.0153 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN C AND RESID 5:16) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8669 -27.7500 -16.6139 REMARK 3 T TENSOR REMARK 3 T11: 1.6841 T22: 1.4057 REMARK 3 T33: 1.4118 T12: 0.0409 REMARK 3 T13: 0.1476 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 2.5196 L22: 1.5562 REMARK 3 L33: 1.3220 L12: 1.5366 REMARK 3 L13: 1.9923 L23: 0.6065 REMARK 3 S TENSOR REMARK 3 S11: -0.1035 S12: 0.1123 S13: 0.3809 REMARK 3 S21: 0.3725 S22: -0.6406 S23: 0.9526 REMARK 3 S31: 0.4570 S32: -1.4940 S33: -0.0004 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN C AND RESID 17:20) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3275 -13.8964 3.2950 REMARK 3 T TENSOR REMARK 3 T11: 2.4764 T22: 2.9551 REMARK 3 T33: 1.4133 T12: 0.7546 REMARK 3 T13: 0.2648 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 0.0845 L22: 0.0637 REMARK 3 L33: 0.2891 L12: 0.0547 REMARK 3 L13: -0.0121 L23: -0.0935 REMARK 3 S TENSOR REMARK 3 S11: -0.0916 S12: -1.4340 S13: 1.2672 REMARK 3 S21: 2.2043 S22: -0.1824 S23: 1.7422 REMARK 3 S31: -1.1409 S32: 0.1855 S33: -0.0093 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN D AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0230 -18.8966 -48.8758 REMARK 3 T TENSOR REMARK 3 T11: 1.7210 T22: 2.3304 REMARK 3 T33: 2.6695 T12: -0.1831 REMARK 3 T13: -0.1119 T23: -0.4873 REMARK 3 L TENSOR REMARK 3 L11: 0.1837 L22: 0.1119 REMARK 3 L33: 0.0089 L12: -0.1558 REMARK 3 L13: -0.0065 L23: -0.0117 REMARK 3 S TENSOR REMARK 3 S11: -0.7459 S12: -2.7122 S13: -1.2818 REMARK 3 S21: -0.3544 S22: -2.3771 S23: 5.0327 REMARK 3 S31: 1.6003 S32: -2.6387 S33: 0.0055 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN D AND RESID 5:12) REMARK 3 ORIGIN FOR THE GROUP (A): 33.5990 -16.8479 -29.9619 REMARK 3 T TENSOR REMARK 3 T11: 1.2471 T22: 1.2953 REMARK 3 T33: 1.4263 T12: 0.1499 REMARK 3 T13: -0.2346 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.7605 L22: 1.4763 REMARK 3 L33: 1.0155 L12: 1.3460 REMARK 3 L13: 0.3319 L23: 0.1785 REMARK 3 S TENSOR REMARK 3 S11: -1.6339 S12: -0.9510 S13: 0.8345 REMARK 3 S21: -0.0383 S22: 0.4022 S23: 0.4352 REMARK 3 S31: -0.5861 S32: -2.2045 S33: 0.0004 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN D AND RESID 13:20) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0164 -41.2886 -30.7617 REMARK 3 T TENSOR REMARK 3 T11: 2.1874 T22: 1.6474 REMARK 3 T33: 1.4955 T12: -0.1308 REMARK 3 T13: 0.1330 T23: -0.1986 REMARK 3 L TENSOR REMARK 3 L11: 0.4425 L22: 0.8531 REMARK 3 L33: 0.4728 L12: -0.0985 REMARK 3 L13: -0.1085 L23: -0.1075 REMARK 3 S TENSOR REMARK 3 S11: 0.8836 S12: 0.8482 S13: -0.0688 REMARK 3 S21: -0.1814 S22: -0.5498 S23: -0.2051 REMARK 3 S31: -1.2038 S32: -3.8139 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATSON-CRICK BASE PAIRING WAS REMARK 3 RESTRAINED BY GEOMETRY_RESTRAINTS. EDITS WITH BOND PARAMETERS REMARK 3 DERIVED FROM DNA-RNA_RESTRAINTS.DEF FILE OF CNS. AS THE HOLLIDAY REMARK 3 JUNCTION SITS ON A TWO-FOLD SYMMETRY AXIS THE HALF JUNCTION HAS REMARK 3 BEEN MODELED USING ONE OF THE CONTINUOUS STRAND (STRAND 2) AND REMARK 3 ITS COMPLEMENTARY STRAND AS THE CROSSOVER STRAND. THUS THE REMARK 3 CROSSOVER STRAND IN THE HALF-JUNCTION IS A CHIMERA OF THE REAL REMARK 3 SEQUENCES (STRANDS 1 AND 3). REMARK 4 REMARK 4 2WIZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : PT COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8420 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 9.340 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.67 REMARK 200 R MERGE FOR SHELL (I) : 1.03000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WCZ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 0.2 M AMMONIUM REMARK 280 ACETATE, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.67333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.83667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.67333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.83667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.67333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 41.83667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 83.67333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.83667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -41.83667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 THR A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 ARG A 131 REMARK 465 PHE A 132 REMARK 465 GLY A 133 REMARK 465 GLU A 134 REMARK 465 LYS A 135 REMARK 465 VAL A 136 REMARK 465 GLY B -2 REMARK 465 THR B -1 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 LYS B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 GLY B 5 REMARK 465 PHE B 128 REMARK 465 GLN B 129 REMARK 465 GLU B 130 REMARK 465 ARG B 131 REMARK 465 PHE B 132 REMARK 465 GLY B 133 REMARK 465 GLU B 134 REMARK 465 LYS B 135 REMARK 465 VAL B 136 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT C 17 N3 - C4 - O4 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT C 17 C5 - C4 - O4 ANGL. DEV. = -5.6 DEGREES REMARK 500 DC C 18 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 1 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 DC D 10 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 11 -70.88 -47.64 REMARK 500 ALA A 27 107.41 -55.49 REMARK 500 SER A 29 -5.96 -54.54 REMARK 500 PRO A 33 43.17 -75.83 REMARK 500 ASN A 43 18.46 -157.66 REMARK 500 GLU A 57 145.51 -174.98 REMARK 500 ASP A 65 -71.27 -59.75 REMARK 500 GLU A 66 -37.79 -32.21 REMARK 500 ARG A 89 16.06 57.04 REMARK 500 LYS A 105 20.12 -149.40 REMARK 500 ASN A 106 -168.34 -129.04 REMARK 500 ASP A 110 -160.52 -120.09 REMARK 500 GLN A 129 56.22 -161.88 REMARK 500 SER B 29 -77.42 -36.31 REMARK 500 VAL B 31 -103.90 6.63 REMARK 500 ASN B 43 13.21 -149.80 REMARK 500 ARG B 89 -15.42 69.75 REMARK 500 LYS B 105 4.53 -152.32 REMARK 500 ASN B 106 -148.40 -129.56 REMARK 500 ALA B 124 -70.38 -64.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WIW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF HOLLIDAY JUNCTION RESOLVASES FROM REMARK 900 ARCHAEOGLOBUS FULGIDUS BOUND TO DNA SUBSTRATE REMARK 900 RELATED ID: 2WCZ RELATED DB: PDB REMARK 900 1.6A RESOLUTION STRUCTURE OF ARCHAEOGLOBUS FULGIDUS HJC, A HOLLIDAY REMARK 900 JUNCTION RESOLVASE FROM AN ARCHAEAL HYPERTHERMOPHILE REMARK 900 RELATED ID: 2WCW RELATED DB: PDB REMARK 900 1.6A RESOLUTION STRUCTURE OF ARCHAEOGLOBUS FULGIDUS HJC, A HOLLIDAY REMARK 900 JUNCTION RESOLVASE FROM AN ARCHAEAL HYPERTHERMOPHILE REMARK 900 RELATED ID: 2WJ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF HOLLIDAY JUNCTION RESOLVASES FROM REMARK 900 ARCHAEOGLOBUS FULGIDUS BOUND TO DNA SUBSTRATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 INSERTED RESIDUES GTMG AT THE N-TERMINUS ARE A RESULT OF REMARK 999 CLONING PROCEDURE DBREF 2WIZ A -2 1 PDB 2WIZ 2WIZ -2 1 DBREF 2WIZ A 2 136 UNP O28314 O28314_ARCFU 2 136 DBREF 2WIZ B -2 1 PDB 2WIZ 2WIZ -2 1 DBREF 2WIZ B 2 136 UNP O28314 O28314_ARCFU 2 136 DBREF 2WIZ C 1 20 PDB 2WIZ 2WIZ 1 20 DBREF 2WIZ D 1 20 PDB 2WIZ 2WIZ 1 20 SEQRES 1 A 139 GLY THR MET GLY LYS SER LYS GLY THR ARG PHE GLU ARG SEQRES 2 A 139 ASP LEU LEU VAL GLU LEU TRP LYS ALA GLY PHE ALA ALA SEQRES 3 A 139 ILE ARG VAL ALA GLY SER GLY VAL SER PRO PHE PRO CYS SEQRES 4 A 139 PRO ASP ILE VAL ALA GLY ASN GLY ARG THR TYR LEU ALA SEQRES 5 A 139 ILE GLU VAL LYS MET ARG LYS GLU LEU PRO LEU TYR LEU SEQRES 6 A 139 SER ALA ASP GLU VAL GLU GLN LEU VAL THR PHE ALA ARG SEQRES 7 A 139 GLY PHE GLY ALA GLU ALA TYR VAL ALA LEU LYS LEU PRO SEQRES 8 A 139 ARG LYS LYS TRP ARG PHE PHE PRO VAL GLN MET LEU GLU SEQRES 9 A 139 ARG THR GLU LYS ASN PHE LYS ILE ASP GLU SER VAL TYR SEQRES 10 A 139 PRO LEU GLY LEU GLU ILE ALA GLU VAL ALA GLY LYS PHE SEQRES 11 A 139 PHE GLN GLU ARG PHE GLY GLU LYS VAL SEQRES 1 B 139 GLY THR MET GLY LYS SER LYS GLY THR ARG PHE GLU ARG SEQRES 2 B 139 ASP LEU LEU VAL GLU LEU TRP LYS ALA GLY PHE ALA ALA SEQRES 3 B 139 ILE ARG VAL ALA GLY SER GLY VAL SER PRO PHE PRO CYS SEQRES 4 B 139 PRO ASP ILE VAL ALA GLY ASN GLY ARG THR TYR LEU ALA SEQRES 5 B 139 ILE GLU VAL LYS MET ARG LYS GLU LEU PRO LEU TYR LEU SEQRES 6 B 139 SER ALA ASP GLU VAL GLU GLN LEU VAL THR PHE ALA ARG SEQRES 7 B 139 GLY PHE GLY ALA GLU ALA TYR VAL ALA LEU LYS LEU PRO SEQRES 8 B 139 ARG LYS LYS TRP ARG PHE PHE PRO VAL GLN MET LEU GLU SEQRES 9 B 139 ARG THR GLU LYS ASN PHE LYS ILE ASP GLU SER VAL TYR SEQRES 10 B 139 PRO LEU GLY LEU GLU ILE ALA GLU VAL ALA GLY LYS PHE SEQRES 11 B 139 PHE GLN GLU ARG PHE GLY GLU LYS VAL SEQRES 1 C 20 DG DG DA DT DC DC DC DT DA DA DG DC DT SEQRES 2 C 20 DC DC DA DT DC DG DA SEQRES 1 D 20 DT DC DG DA DT DG DG DA DG DC DT DT DA SEQRES 2 D 20 DG DG DG DA DT DC DC HELIX 1 1 THR A 6 ALA A 19 1 14 HELIX 2 2 SER A 63 ARG A 75 1 13 HELIX 3 3 GLN A 98 LEU A 100 5 3 HELIX 4 4 GLU A 119 ALA A 124 1 6 HELIX 5 5 THR B 6 ALA B 19 1 14 HELIX 6 6 SER B 63 ARG B 75 1 13 HELIX 7 7 GLN B 98 LEU B 100 5 3 HELIX 8 8 GLU B 119 ALA B 124 1 6 SHEET 1 AA 5 ILE A 24 ARG A 25 0 SHEET 2 AA 5 ILE A 39 ALA A 41 -1 O VAL A 40 N ILE A 24 SHEET 3 AA 5 LEU A 48 MET A 54 -1 O LEU A 48 N ALA A 41 SHEET 4 AA 5 GLU A 80 LYS A 86 1 O GLU A 80 N ALA A 49 SHEET 5 AA 5 TRP A 92 PRO A 96 -1 O ARG A 93 N LEU A 85 SHEET 1 AB 3 LEU A 60 LEU A 62 0 SHEET 2 AB 3 PHE A 107 ILE A 109 -1 O PHE A 107 N LEU A 62 SHEET 3 AB 3 GLU A 101 ARG A 102 -1 O GLU A 101 N LYS A 108 SHEET 1 BA 5 ILE B 24 ARG B 25 0 SHEET 2 BA 5 ILE B 39 ALA B 41 -1 O VAL B 40 N ILE B 24 SHEET 3 BA 5 LEU B 48 MET B 54 -1 O LEU B 48 N ALA B 41 SHEET 4 BA 5 GLU B 80 LYS B 86 1 O GLU B 80 N ALA B 49 SHEET 5 BA 5 ARG B 93 PRO B 96 -1 O ARG B 93 N LEU B 85 SHEET 1 BB 3 LEU B 60 LEU B 62 0 SHEET 2 BB 3 PHE B 107 ILE B 109 -1 O PHE B 107 N LEU B 62 SHEET 3 BB 3 GLU B 101 ARG B 102 -1 O GLU B 101 N LYS B 108 CISPEP 1 LEU A 58 PRO A 59 0 -1.71 CISPEP 2 GLN A 129 GLU A 130 0 -4.54 CISPEP 3 LEU B 58 PRO B 59 0 -1.08 CRYST1 122.650 122.650 125.510 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008153 0.004707 0.000000 0.00000 SCALE2 0.000000 0.009415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007967 0.00000 MTRIX1 1 -0.739700 -0.332400 0.585100 69.45000 1 MTRIX2 1 -0.290300 -0.626900 -0.723000 -63.22000 1 MTRIX3 1 0.607100 -0.704700 0.367200 -63.03000 1