PDB Short entry for 2WJW HEADER TRANSPORT PROTEIN 01-JUN-09 2WJW TITLE CRYSTAL STRUCTURE OF THE HUMAN IONOTROPIC GLUTAMATE RECEPTOR GLUR2 ATD TITLE 2 REGION AT 1.8 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMINO-TERMINAL DOMAIN, RESIDUES 25-412; COMPND 5 SYNONYM: GLUR-B, GLUR-K2, GLUTAMATE RECEPTOR IONOTROPIC AMPA 2, AMPA- COMPND 6 SELECTIVE GLUTAMATE RECEPTOR 2, GLUR-2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S GNTI- CELLS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS TRANSPORT PROTEIN, POSTSYNAPTIC CELL MEMBRANE, GLUR2, SYNAPSE, KEYWDS 2 MEMBRANE, RECEPTOR, PALMITATE, SYNAPTIC PLASTICITY, ALTERNATIVE KEYWDS 3 SPLICING, ION TRANSPORT, CELL JUNCTION, CELL MEMBRANE, KEYWDS 4 TRANSMEMBRANE, PHOSPHOPROTEIN, GLUTAMATE RECEPTORS, POLYMORPHISM, KEYWDS 5 GLYCOPROTEIN, IONIC CHANNEL, TRANSPORT, ION CHANNEL, RNA EDITING, KEYWDS 6 LIPOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CLAYTON,C.SIEBOLD,R.J.C.GILBERT,G.C.SUTTON,K.HARLOS, AUTHOR 2 R.A.J.MCILHINNEY,E.Y.JONES,A.R.ARICESCU REVDAT 4 29-JUL-20 2WJW 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 29-SEP-09 2WJW 1 JRNL REVDAT 2 25-AUG-09 2WJW 1 TITLE REVDAT 1 18-AUG-09 2WJW 0 JRNL AUTH A.CLAYTON,C.SIEBOLD,R.J.C.GILBERT,G.C.SUTTON,K.HARLOS, JRNL AUTH 2 R.A.J.MCILHINNEY,E.Y.JONES,A.R.ARICESCU JRNL TITL CRYSTAL STRUCTURE OF THE GLUR2 AMINO-TERMINAL DOMAIN JRNL TITL 2 PROVIDES INSIGHTS INTO THE ARCHITECTURE AND ASSEMBLY OF JRNL TITL 3 IONOTROPIC GLUTAMATE RECEPTORS. JRNL REF J.MOL.BIOL. V. 392 1125 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19651138 JRNL DOI 10.1016/J.JMB.2009.07.082 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 38999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1705 - 4.0019 1.00 3719 173 0.1857 0.2276 REMARK 3 2 4.0019 - 3.1769 1.00 3604 146 0.1686 0.1789 REMARK 3 3 3.1769 - 2.7755 0.99 3557 142 0.1843 0.2090 REMARK 3 4 2.7755 - 2.5217 0.99 3502 152 0.1890 0.2390 REMARK 3 5 2.5217 - 2.3410 0.98 3442 153 0.1755 0.1971 REMARK 3 6 2.3410 - 2.2030 0.98 3448 151 0.1667 0.2044 REMARK 3 7 2.2030 - 2.0927 0.97 3404 158 0.1672 0.2098 REMARK 3 8 2.0927 - 2.0016 0.95 3326 130 0.1689 0.2041 REMARK 3 9 2.0016 - 1.9245 0.93 3290 120 0.1784 0.2159 REMARK 3 10 1.9245 - 1.8581 0.89 3160 123 0.1962 0.2465 REMARK 3 11 1.8581 - 1.8000 0.85 2981 118 0.2223 0.2773 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 60.45 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.41070 REMARK 3 B22 (A**2) : 0.36140 REMARK 3 B33 (A**2) : -7.77210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3078 REMARK 3 ANGLE : 0.862 4157 REMARK 3 CHIRALITY : 0.059 458 REMARK 3 PLANARITY : 0.003 535 REMARK 3 DIHEDRAL : 15.264 1109 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 25:130 OR RESID 262:371) REMARK 3 ORIGIN FOR THE GROUP (A): -28.7559 -19.8748 -20.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.0870 REMARK 3 T33: 0.1082 T12: 0.0188 REMARK 3 T13: -0.0133 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.6655 L22: 0.6399 REMARK 3 L33: 1.8273 L12: -0.0691 REMARK 3 L13: 0.0129 L23: 0.2308 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.0206 S13: 0.0504 REMARK 3 S21: -0.0475 S22: 0.0033 S23: 0.0369 REMARK 3 S31: -0.3038 S32: -0.1065 S33: 0.0408 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 131:261 OR RESID 372:398) REMARK 3 ORIGIN FOR THE GROUP (A): -19.7093 -46.8201 -13.7358 REMARK 3 T TENSOR REMARK 3 T11: 0.1120 T22: 0.1255 REMARK 3 T33: 0.1742 T12: -0.0076 REMARK 3 T13: -0.0129 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.2604 L22: 3.2729 REMARK 3 L33: 2.5557 L12: -0.1311 REMARK 3 L13: -0.0987 L23: -1.5092 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: -0.0228 S13: -0.0065 REMARK 3 S21: 0.2000 S22: -0.1437 S23: -0.4054 REMARK 3 S31: -0.0761 S32: 0.3461 S33: 0.1270 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 322-327 AND 399-412 ARE REMARK 3 DISORDERED. RESIDUES 153-159 ARE MODELED IN DOUBLE CONFORMATION. REMARK 4 REMARK 4 2WJW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1290040023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40760 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM ACETATE, PH 4.6 0.16M REMARK 280 AMMONIUM SULPHATE 20 (W/V) PEG4000 20% (V/V) GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.48850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.22750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 69.42600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.48850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.22750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.42600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.48850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.22750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.42600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.48850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.22750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.42600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -50.97700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OD2 ASP A 186 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2053 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2122 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2132 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 322 REMARK 465 ARG A 323 REMARK 465 ARG A 324 REMARK 465 GLY A 325 REMARK 465 ASN A 326 REMARK 465 ALA A 327 REMARK 465 LEU A 399 REMARK 465 THR A 400 REMARK 465 GLU A 401 REMARK 465 LEU A 402 REMARK 465 PRO A 403 REMARK 465 SER A 404 REMARK 465 GLY A 405 REMARK 465 ASN A 406 REMARK 465 ASP A 407 REMARK 465 THR A 408 REMARK 465 SER A 409 REMARK 465 GLY A 410 REMARK 465 LEU A 411 REMARK 465 GLU A 412 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 186 OD1 - CG - OD2 ANGL. DEV. = -26.8 DEGREES REMARK 500 ASP A 186 CB - CG - OD2 ANGL. DEV. = -25.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 154 -33.98 91.48 REMARK 500 LEU A 158 -1.07 -145.13 REMARK 500 ASN A 184 5.68 -63.11 REMARK 500 ASN A 185 19.00 53.46 REMARK 500 ASP A 186 -69.86 -132.88 REMARK 500 LYS A 202 9.56 -69.76 REMARK 500 ILE A 226 48.92 -80.98 REMARK 500 ALA A 288 -159.42 -96.47 REMARK 500 LYS A 394 -137.61 54.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 186 0.24 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WJX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN GLUR2 ATD REGION AT 4.1 A RESOLUTION. DBREF 2WJW A 25 412 UNP P42262 GRIA2_HUMAN 25 412 SEQRES 1 A 388 ASN SER ILE GLN ILE GLY GLY LEU PHE PRO ARG GLY ALA SEQRES 2 A 388 ASP GLN GLU TYR SER ALA PHE ARG VAL GLY MET VAL GLN SEQRES 3 A 388 PHE SER THR SER GLU PHE ARG LEU THR PRO HIS ILE ASP SEQRES 4 A 388 ASN LEU GLU VAL ALA ASN SER PHE ALA VAL THR ASN ALA SEQRES 5 A 388 PHE CYS SER GLN PHE SER ARG GLY VAL TYR ALA ILE PHE SEQRES 6 A 388 GLY PHE TYR ASP LYS LYS SER VAL ASN THR ILE THR SER SEQRES 7 A 388 PHE CYS GLY THR LEU HIS VAL SER PHE ILE THR PRO SER SEQRES 8 A 388 PHE PRO THR ASP GLY THR HIS PRO PHE VAL ILE GLN MET SEQRES 9 A 388 ARG PRO ASP LEU LYS GLY ALA LEU LEU SER LEU ILE GLU SEQRES 10 A 388 TYR TYR GLN TRP ASP LYS PHE ALA TYR LEU TYR ASP SER SEQRES 11 A 388 ASP ARG GLY LEU SER THR LEU GLN ALA VAL LEU ASP SER SEQRES 12 A 388 ALA ALA GLU LYS LYS TRP GLN VAL THR ALA ILE ASN VAL SEQRES 13 A 388 GLY ASN ILE ASN ASN ASP LYS LYS ASP GLU MET TYR ARG SEQRES 14 A 388 SER LEU PHE GLN ASP LEU GLU LEU LYS LYS GLU ARG ARG SEQRES 15 A 388 VAL ILE LEU ASP CYS GLU ARG ASP LYS VAL ASN ASP ILE SEQRES 16 A 388 VAL ASP GLN VAL ILE THR ILE GLY LYS HIS VAL LYS GLY SEQRES 17 A 388 TYR HIS TYR ILE ILE ALA ASN LEU GLY PHE THR ASP GLY SEQRES 18 A 388 ASP LEU LEU LYS ILE GLN PHE GLY GLY ALA ASN VAL SER SEQRES 19 A 388 GLY PHE GLN ILE VAL ASP TYR ASP ASP SER LEU VAL SER SEQRES 20 A 388 LYS PHE ILE GLU ARG TRP SER THR LEU GLU GLU LYS GLU SEQRES 21 A 388 TYR PRO GLY ALA HIS THR THR THR ILE LYS TYR THR SER SEQRES 22 A 388 ALA LEU THR TYR ASP ALA VAL GLN VAL MET THR GLU ALA SEQRES 23 A 388 PHE ARG ASN LEU ARG LYS GLN ARG ILE GLU ILE SER ARG SEQRES 24 A 388 ARG GLY ASN ALA GLY ASP CYS LEU ALA ASN PRO ALA VAL SEQRES 25 A 388 PRO TRP GLY GLN GLY VAL GLU ILE GLU ARG ALA LEU LYS SEQRES 26 A 388 GLN VAL GLN VAL GLU GLY LEU SER GLY ASN ILE LYS PHE SEQRES 27 A 388 ASP GLN ASN GLY LYS ARG ILE ASN TYR THR ILE ASN ILE SEQRES 28 A 388 MET GLU LEU LYS THR ASN GLY PRO ARG LYS ILE GLY TYR SEQRES 29 A 388 TRP SER GLU VAL ASP LYS MET VAL VAL THR LEU THR GLU SEQRES 30 A 388 LEU PRO SER GLY ASN ASP THR SER GLY LEU GLU MODRES 2WJW ASN A 370 ASN GLYCOSYLATION SITE HET NAG A1399 14 HET CL A1400 1 HET SO4 A1401 5 HET ACT A1402 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 2 NAG C8 H15 N O6 FORMUL 3 CL CL 1- FORMUL 4 SO4 O4 S 2- FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *279(H2 O) HELIX 1 1 ALA A 37 SER A 52 1 16 HELIX 2 2 ASN A 69 GLY A 84 1 16 HELIX 3 3 SER A 96 HIS A 108 1 13 HELIX 4 4 LEU A 132 TYR A 143 1 12 HELIX 5 5 LEU A 158 LYS A 172 1 15 HELIX 6 6 LYS A 187 TYR A 192 1 6 HELIX 7 7 TYR A 192 LYS A 202 1 11 HELIX 8 8 GLU A 212 ILE A 226 1 15 HELIX 9 9 HIS A 229 GLY A 232 5 4 HELIX 10 10 ASP A 246 ILE A 250 5 5 HELIX 11 11 ASP A 267 SER A 278 1 12 HELIX 12 12 LYS A 294 GLN A 317 1 24 HELIX 13 13 GLN A 340 GLN A 350 1 11 SHEET 1 AA 5 LEU A 58 LEU A 65 0 SHEET 2 AA 5 ILE A 27 PRO A 34 1 O ILE A 27 N THR A 59 SHEET 3 AA 5 ILE A 88 GLY A 90 1 O PHE A 89 N LEU A 32 SHEET 4 AA 5 PHE A 111 THR A 113 1 O ILE A 112 N GLY A 90 SHEET 5 AA 5 VAL A 125 GLN A 127 1 O ILE A 126 N THR A 113 SHEET 1 AB 8 GLN A 174 ASN A 179 0 SHEET 2 AB 8 LYS A 147 TYR A 152 1 O PHE A 148 N THR A 176 SHEET 3 AB 8 ARG A 206 ASP A 210 1 O ARG A 206 N ALA A 149 SHEET 4 AB 8 HIS A 234 ILE A 237 1 O HIS A 234 N VAL A 207 SHEET 5 AB 8 ASN A 256 GLN A 261 1 O ASN A 256 N TYR A 235 SHEET 6 AB 8 ILE A 373 LYS A 379 -1 O ASN A 374 N GLN A 261 SHEET 7 AB 8 GLY A 382 SER A 390 -1 O GLY A 382 N LYS A 379 SHEET 8 AB 8 LYS A 394 VAL A 397 -1 O LYS A 394 N SER A 390 SHEET 1 AC 2 VAL A 353 GLY A 355 0 SHEET 2 AC 2 GLY A 358 ILE A 360 -1 O GLY A 358 N GLY A 355 SSBOND 1 CYS A 78 CYS A 330 1555 1555 2.04 LINK ND2 ASN A 370 C1 NAG A1399 1555 1555 1.44 CISPEP 1 ASN A 333 PRO A 334 0 2.40 CRYST1 50.977 122.455 138.852 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019617 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007202 0.00000