PDB Short entry for 2WM1 HEADER LYASE 29-JUN-09 2WM1 TITLE THE CRYSTAL STRUCTURE OF HUMAN ALPHA-AMINO-BETA-CARBOXYMUCONATE- TITLE 2 EPSILON-SEMIALDEHYDE DECARBOXYLASE IN COMPLEX WITH 1,3- TITLE 3 DIHYDROXYACETONEPHOSPHATE SUGGESTS A REGULATORY LINK BETWEEN NAD TITLE 4 SYNTHESIS AND GLYCOLYSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-AMINO-3-CARBOXYMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-AMINO-BETA-CARBOXYMUCONATE-EPSILON-SEMIALDEHYDE COMPND 5 DECARBOXYLASE; COMPND 6 EC: 4.1.1.45; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: GS115; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PHIL-D2 KEYWDS NEUROLOGICAL DISORDERS, METAL-DEPENDENT AMIDOHYDROLASE, KYNURENINE KEYWDS 2 PATHWAY, ALTERNATIVE SPLICING, QUINOLINIC ACID, NAD BIOSYNTHESIS, KEYWDS 3 CEREBRAL MALARIA, LYASE, DECARBOXYLASE, PICOLINIC ACID, KEYWDS 4 PHOSPHOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.GARAVAGLIA,S.PEROZZI,L.GALEAZZI,N.RAFFAELLI,M.RIZZI REVDAT 3 13-DEC-23 2WM1 1 REMARK LINK REVDAT 2 09-FEB-10 2WM1 1 JRNL REMARK REVDAT 1 03-NOV-09 2WM1 0 JRNL AUTH S.GARAVAGLIA,S.PEROZZI,L.GALEAZZI,N.RAFFAELLI,M.RIZZI JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN JRNL TITL 2 ALPHA-AMINO-BETA-CARBOXYMUCONATE-EPSILON-SEMIALDEHYDE JRNL TITL 3 DECARBOXYLASE IN COMPLEX WITH 1,3-DIHYDROXYACETONEPHOSPHATE JRNL TITL 4 SUGGESTS A REGULATORY LINK BETWEEN NAD SYNTHESIS AND JRNL TITL 5 GLYCOLYSIS JRNL REF FEBS J. V. 276 6615 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19843166 JRNL DOI 10.1111/J.1742-4658.2009.07372.X REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1669 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2635 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.161 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2720 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3679 ; 1.588 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 331 ; 6.356 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;37.240 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 477 ;16.069 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;22.000 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2042 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1654 ; 0.865 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2668 ; 1.519 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1066 ; 2.577 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1011 ; 3.994 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1290040277. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2HBV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.44533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.72267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.72267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.44533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.44533 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 333 REMARK 465 GLN A 334 REMARK 465 PHE A 335 REMARK 465 GLU A 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2052 O HOH A 2142 1.73 REMARK 500 O ARG A 332 O HOH A 2214 1.93 REMARK 500 CE LYS A 66 O HOH A 2053 2.07 REMARK 500 OD1 ASN A 98 NH2 ARG A 131 2.11 REMARK 500 O HOH A 2003 O HOH A 2015 2.14 REMARK 500 NZ LYS A 66 O HOH A 2053 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 131 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 131 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 -86.79 -138.12 REMARK 500 ASP A 42 97.65 37.86 REMARK 500 ASN A 148 -117.26 54.11 REMARK 500 ALA A 185 47.39 -78.09 REMARK 500 ASN A 251 102.16 -166.89 REMARK 500 HIS A 269 -46.00 67.84 REMARK 500 ALA A 321 -43.26 -152.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1333 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 6 NE2 REMARK 620 2 HIS A 8 NE2 99.5 REMARK 620 3 HIS A 174 NE2 106.2 96.2 REMARK 620 4 ASP A 291 OD1 81.6 92.0 167.5 REMARK 620 5 HOH A2215 O 143.6 113.2 86.2 81.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 13P A 1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1335 REMARK 999 REMARK 999 SEQUENCE REMARK 999 LAST FOUR C-TERMINAL RESIDUES NOT VISIBLE IN THE ELECTRON REMARK 999 DENSITY DBREF 2WM1 A 1 336 UNP Q8TDX5 ACMSD_HUMAN 1 336 SEQRES 1 A 336 MET LYS ILE ASP ILE HIS SER HIS ILE LEU PRO LYS GLU SEQRES 2 A 336 TRP PRO ASP LEU LYS LYS ARG PHE GLY TYR GLY GLY TRP SEQRES 3 A 336 VAL GLN LEU GLN HIS HIS SER LYS GLY GLU ALA LYS LEU SEQRES 4 A 336 LEU LYS ASP GLY LYS VAL PHE ARG VAL VAL ARG GLU ASN SEQRES 5 A 336 CYS TRP ASP PRO GLU VAL ARG ILE ARG GLU MET ASP GLN SEQRES 6 A 336 LYS GLY VAL THR VAL GLN ALA LEU SER THR VAL PRO VAL SEQRES 7 A 336 MET PHE SER TYR TRP ALA LYS PRO GLU ASP THR LEU ASN SEQRES 8 A 336 LEU CYS GLN LEU LEU ASN ASN ASP LEU ALA SER THR VAL SEQRES 9 A 336 VAL SER TYR PRO ARG ARG PHE VAL GLY LEU GLY THR LEU SEQRES 10 A 336 PRO MET GLN ALA PRO GLU LEU ALA VAL LYS GLU MET GLU SEQRES 11 A 336 ARG CYS VAL LYS GLU LEU GLY PHE PRO GLY VAL GLN ILE SEQRES 12 A 336 GLY THR HIS VAL ASN GLU TRP ASP LEU ASN ALA GLN GLU SEQRES 13 A 336 LEU PHE PRO VAL TYR ALA ALA ALA GLU ARG LEU LYS CYS SEQRES 14 A 336 SER LEU PHE VAL HIS PRO TRP ASP MET GLN MET ASP GLY SEQRES 15 A 336 ARG MET ALA LYS TYR TRP LEU PRO TRP LEU VAL GLY MET SEQRES 16 A 336 PRO ALA GLU THR THR ILE ALA ILE CYS SER MET ILE MET SEQRES 17 A 336 GLY GLY VAL PHE GLU LYS PHE PRO LYS LEU LYS VAL CYS SEQRES 18 A 336 PHE ALA HIS GLY GLY GLY ALA PHE PRO PHE THR VAL GLY SEQRES 19 A 336 ARG ILE SER HIS GLY PHE SER MET ARG PRO ASP LEU CYS SEQRES 20 A 336 ALA GLN ASP ASN PRO MET ASN PRO LYS LYS TYR LEU GLY SEQRES 21 A 336 SER PHE TYR THR ASP ALA LEU VAL HIS ASP PRO LEU SER SEQRES 22 A 336 LEU LYS LEU LEU THR ASP VAL ILE GLY LYS ASP LYS VAL SEQRES 23 A 336 ILE LEU GLY THR ASP TYR PRO PHE PRO LEU GLY GLU LEU SEQRES 24 A 336 GLU PRO GLY LYS LEU ILE GLU SER MET GLU GLU PHE ASP SEQRES 25 A 336 GLU GLU THR LYS ASN LYS LEU LYS ALA GLY ASN ALA LEU SEQRES 26 A 336 ALA PHE LEU GLY LEU GLU ARG LYS GLN PHE GLU HET ZN A1333 1 HET 13P A1334 10 HET GOL A1335 6 HETNAM ZN ZINC ION HETNAM 13P 1,3-DIHYDROXYACETONEPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 13P C3 H7 O6 P FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *216(H2 O) HELIX 1 1 ASP A 16 GLY A 22 1 7 HELIX 2 2 ASN A 52 TRP A 54 5 3 HELIX 3 3 ASP A 55 GLY A 67 1 13 HELIX 4 4 VAL A 76 SER A 81 5 6 HELIX 5 5 LYS A 85 TYR A 107 1 23 HELIX 6 6 ALA A 121 GLU A 135 1 15 HELIX 7 7 ALA A 154 GLU A 156 5 3 HELIX 8 8 LEU A 157 LYS A 168 1 12 HELIX 9 9 ASP A 181 ALA A 185 5 5 HELIX 10 10 TRP A 188 VAL A 193 1 6 HELIX 11 11 VAL A 193 GLY A 209 1 17 HELIX 12 12 GLY A 210 PHE A 215 1 6 HELIX 13 13 HIS A 224 GLY A 227 5 4 HELIX 14 14 ALA A 228 ALA A 248 1 21 HELIX 15 15 ASN A 254 LEU A 259 5 6 HELIX 16 16 ASP A 270 GLY A 282 1 13 HELIX 17 17 GLY A 302 SER A 307 1 6 HELIX 18 18 ASP A 312 ALA A 321 1 10 HELIX 19 19 ALA A 321 GLY A 329 1 9 SHEET 1 AA 8 ILE A 3 HIS A 8 0 SHEET 2 AA 8 VAL A 70 SER A 74 1 O VAL A 70 N ASP A 4 SHEET 3 AA 8 PHE A 111 GLY A 115 1 O VAL A 112 N LEU A 73 SHEET 4 AA 8 GLY A 140 GLY A 144 1 O GLY A 140 N GLY A 115 SHEET 5 AA 8 SER A 170 HIS A 174 1 O SER A 170 N VAL A 141 SHEET 6 AA 8 VAL A 220 PHE A 222 1 O CYS A 221 N VAL A 173 SHEET 7 AA 8 TYR A 263 ASP A 265 1 O TYR A 263 N PHE A 222 SHEET 8 AA 8 VAL A 286 ILE A 287 1 N ILE A 287 O THR A 264 SHEET 1 AB 3 VAL A 27 SER A 33 0 SHEET 2 AB 3 GLU A 36 LYS A 41 -1 O GLU A 36 N SER A 33 SHEET 3 AB 3 LYS A 44 ARG A 50 -1 O LYS A 44 N LYS A 41 SHEET 1 AC 2 HIS A 146 VAL A 147 0 SHEET 2 AC 2 TRP A 150 ASP A 151 -1 O TRP A 150 N VAL A 147 LINK NE2 HIS A 6 ZN ZN A1333 1555 1555 2.00 LINK NE2 HIS A 8 ZN ZN A1333 1555 1555 2.07 LINK NE2 HIS A 174 ZN ZN A1333 1555 1555 2.23 LINK OD1 ASP A 291 ZN ZN A1333 1555 1555 2.24 LINK ZN ZN A1333 O HOH A2215 1555 1555 2.11 CISPEP 1 TYR A 292 PRO A 293 0 -0.16 SITE 1 AC1 5 HIS A 6 HIS A 8 HIS A 174 ASP A 291 SITE 2 AC1 5 HOH A2215 SITE 1 AC2 10 ARG A 47 PRO A 77 HIS A 174 TRP A 191 SITE 2 AC2 10 ASP A 291 PHE A 294 LEU A 296 HOH A2127 SITE 3 AC2 10 HOH A2215 HOH A2216 SITE 1 AC3 4 VAL A 147 ASN A 148 GLU A 149 HOH A2095 CRYST1 86.227 86.227 92.168 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011597 0.006696 0.000000 0.00000 SCALE2 0.000000 0.013391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010850 0.00000