PDB Short entry for 2WO1 HEADER TRANSFERASE 21-JUL-09 2WO1 TITLE CRYSTAL STRUCTURE OF THE EPHA4 LIGAND BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EPHRIN LIGAND BINDING DOMAIN, RESIDUES 30-202; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR SEK, RECEPTOR PROTEIN- COMPND 6 TYROSINE KINASE HEK8, TYROSINE-PROTEIN KINASE TYRO1; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS GLYCOPROTEIN, AXON GUIDANCE, VASCULAR DEVELOPMENT, CELL SURFACE KEYWDS 2 RECEPTOR, TRANSFERASE, CELL SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR T.A.BOWDEN,A.R.ARICESCU,J.E.NETTLESHIP,C.SIEBOLD,N.RAHMAN-HUQ, AUTHOR 2 R.J.OWENS,D.I.STUART,E.Y.JONES REVDAT 5 20-DEC-23 2WO1 1 REMARK REVDAT 4 28-FEB-18 2WO1 1 SOURCE REVDAT 3 23-NOV-11 2WO1 1 JRNL REVDAT 2 13-JUL-11 2WO1 1 VERSN REVDAT 1 27-OCT-09 2WO1 0 JRNL AUTH T.A.BOWDEN,A.R.ARICESCU,J.E.NETTLESHIP,C.SIEBOLD, JRNL AUTH 2 N.RAHMAN-HUQ,R.J.OWENS,D.I.STUART,E.Y.JONES JRNL TITL STRUCTURAL PLASTICITY OF EPH-RECEPTOR A4 FACILITATES JRNL TITL 2 CROSS-CLASS EPHRIN SIGNALLING JRNL REF STRUCTURE V. 17 1386 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19836338 JRNL DOI 10.1016/J.STR.2009.07.018 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 30277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1595 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2151 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 297 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.34000 REMARK 3 B22 (A**2) : -1.17000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3018 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2073 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4083 ; 1.246 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5032 ; 0.771 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.659 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;34.897 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 534 ;15.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.184 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3355 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 633 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1801 ; 0.786 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 734 ; 0.177 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2929 ; 1.424 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1217 ; 1.776 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1151 ; 2.923 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 6 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 29 A 38 4 REMARK 3 1 B 29 B 38 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 114 ; 0.60 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 114 ; 0.60 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 114 ; 0.86 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 114 ; 0.86 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 46 A 56 4 REMARK 3 1 B 46 NULL 56 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 134 ; 0.37 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 B (A): 134 ; 0.37 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 134 ; 0.62 ; 2.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 134 ; 0.62 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 67 A 103 4 REMARK 3 1 B 67 NULL 103 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 512 ; 0.53 ; 0.50 REMARK 3 MEDIUM POSITIONAL 3 B (A): 512 ; 0.53 ; 0.50 REMARK 3 MEDIUM THERMAL 3 A (A**2): 512 ; 0.79 ; 2.00 REMARK 3 MEDIUM THERMAL 3 B (A**2): 512 ; 0.79 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 4 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 120 A 133 4 REMARK 3 1 B 120 NULL 133 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 4 A (A): 210 ; 0.31 ; 0.50 REMARK 3 MEDIUM POSITIONAL 4 B (A): 210 ; 0.31 ; 0.50 REMARK 3 MEDIUM THERMAL 4 A (A**2): 210 ; 0.53 ; 2.00 REMARK 3 MEDIUM THERMAL 4 B (A**2): 210 ; 0.53 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 5 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 141 A 155 4 REMARK 3 1 B 141 B 155 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 5 A (A): 193 ; 0.24 ; 0.50 REMARK 3 MEDIUM POSITIONAL 5 B (A): 193 ; 0.24 ; 0.50 REMARK 3 MEDIUM THERMAL 5 A (A**2): 193 ; 0.81 ; 2.00 REMARK 3 MEDIUM THERMAL 5 B (A**2): 193 ; 0.81 ; 2.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 6 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 167 A 203 4 REMARK 3 1 B 167 B 203 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 6 A (A): 493 ; 0.43 ; 0.50 REMARK 3 MEDIUM POSITIONAL 6 B (A): 493 ; 0.43 ; 0.50 REMARK 3 MEDIUM THERMAL 6 A (A**2): 493 ; 0.59 ; 2.00 REMARK 3 MEDIUM THERMAL 6 B (A**2): 493 ; 0.59 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 209 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6750 27.0410 47.3350 REMARK 3 T TENSOR REMARK 3 T11: 0.0235 T22: 0.0301 REMARK 3 T33: 0.0288 T12: -0.0002 REMARK 3 T13: 0.0136 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 3.2882 L22: 1.1074 REMARK 3 L33: 0.6438 L12: 0.1127 REMARK 3 L13: -0.0559 L23: 0.0329 REMARK 3 S TENSOR REMARK 3 S11: -0.0700 S12: 0.0165 S13: 0.0770 REMARK 3 S21: -0.0608 S22: 0.0182 S23: 0.0478 REMARK 3 S31: 0.0751 S32: 0.0176 S33: 0.0518 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 203 REMARK 3 ORIGIN FOR THE GROUP (A): 36.8310 47.0230 33.0760 REMARK 3 T TENSOR REMARK 3 T11: 0.1037 T22: 0.0412 REMARK 3 T33: 0.0455 T12: 0.0112 REMARK 3 T13: 0.0287 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.8783 L22: 2.0254 REMARK 3 L33: 2.6505 L12: 0.4311 REMARK 3 L13: 0.0543 L23: 1.0135 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: 0.0860 S13: 0.0854 REMARK 3 S21: -0.3585 S22: -0.0314 S23: 0.0208 REMARK 3 S31: -0.1255 S32: -0.1310 S33: 0.0537 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WO1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1290040489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1NUK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 8% PROPAN-1-OL, AND 100 REMARK 280 MM TRIS PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.61400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 62 REMARK 465 ILE A 159 REMARK 465 GLY A 160 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 GLU B 27 REMARK 465 THR B 28 REMARK 465 LYS B 205 REMARK 465 HIS B 206 REMARK 465 HIS B 207 REMARK 465 HIS B 208 REMARK 465 HIS B 209 REMARK 465 HIS B 210 REMARK 465 HIS B 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 73 57.80 -155.16 REMARK 500 ASN A 74 49.03 -93.05 REMARK 500 ASN A 81 72.29 -150.53 REMARK 500 GLU A 92 -128.40 54.98 REMARK 500 ARG A 135 -95.69 -89.92 REMARK 500 ASP A 151 -127.81 -141.63 REMARK 500 THR A 204 53.29 -144.03 REMARK 500 ASP B 61 107.33 -160.49 REMARK 500 GLU B 62 32.72 -167.70 REMARK 500 LYS B 63 49.51 85.26 REMARK 500 CYS B 73 57.38 -155.29 REMARK 500 ASN B 74 49.44 -96.32 REMARK 500 ASN B 81 69.99 -153.82 REMARK 500 LYS B 133 56.12 -142.93 REMARK 500 ASP B 151 -141.79 -133.06 REMARK 500 ILE B 159 -62.03 -104.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2031 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2036 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH B2031 DISTANCE = 6.02 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL B 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL A 1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE POL B 1206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WO3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EPHA4-EPHRINA2 COMPLEX REMARK 900 RELATED ID: 2WO2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EPHA4-EPHRINB2 COMPLEX DBREF 2WO1 A 30 202 UNP P54764 EPHA4_HUMAN 30 202 DBREF 2WO1 B 30 202 UNP P54764 EPHA4_HUMAN 30 202 SEQADV 2WO1 GLU A 27 UNP P54764 EXPRESSION TAG SEQADV 2WO1 THR A 28 UNP P54764 EXPRESSION TAG SEQADV 2WO1 GLY A 29 UNP P54764 EXPRESSION TAG SEQADV 2WO1 ARG A 203 UNP P54764 EXPRESSION TAG SEQADV 2WO1 THR A 204 UNP P54764 EXPRESSION TAG SEQADV 2WO1 LYS A 205 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS A 206 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS A 207 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS A 208 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS A 209 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS A 210 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS A 211 UNP P54764 EXPRESSION TAG SEQADV 2WO1 GLU B 27 UNP P54764 EXPRESSION TAG SEQADV 2WO1 THR B 28 UNP P54764 EXPRESSION TAG SEQADV 2WO1 GLY B 29 UNP P54764 EXPRESSION TAG SEQADV 2WO1 ARG B 203 UNP P54764 EXPRESSION TAG SEQADV 2WO1 THR B 204 UNP P54764 EXPRESSION TAG SEQADV 2WO1 LYS B 205 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS B 206 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS B 207 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS B 208 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS B 209 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS B 210 UNP P54764 EXPRESSION TAG SEQADV 2WO1 HIS B 211 UNP P54764 EXPRESSION TAG SEQRES 1 A 185 GLU THR GLY GLU VAL THR LEU LEU ASP SER ARG SER VAL SEQRES 2 A 185 GLN GLY GLU LEU GLY TRP ILE ALA SER PRO LEU GLU GLY SEQRES 3 A 185 GLY TRP GLU GLU VAL SER ILE MET ASP GLU LYS ASN THR SEQRES 4 A 185 PRO ILE ARG THR TYR GLN VAL CYS ASN VAL MET GLU PRO SEQRES 5 A 185 SER GLN ASN ASN TRP LEU ARG THR ASP TRP ILE THR ARG SEQRES 6 A 185 GLU GLY ALA GLN ARG VAL TYR ILE GLU ILE LYS PHE THR SEQRES 7 A 185 LEU ARG ASP CYS ASN SER LEU PRO GLY VAL MET GLY THR SEQRES 8 A 185 CYS LYS GLU THR PHE ASN LEU TYR TYR TYR GLU SER ASP SEQRES 9 A 185 ASN ASP LYS GLU ARG PHE ILE ARG GLU ASN GLN PHE VAL SEQRES 10 A 185 LYS ILE ASP THR ILE ALA ALA ASP GLU SER PHE THR GLN SEQRES 11 A 185 VAL ASP ILE GLY ASP ARG ILE MET LYS LEU ASN THR GLU SEQRES 12 A 185 ILE ARG ASP VAL GLY PRO LEU SER LYS LYS GLY PHE TYR SEQRES 13 A 185 LEU ALA PHE GLN ASP VAL GLY ALA CYS ILE ALA LEU VAL SEQRES 14 A 185 SER VAL ARG VAL PHE TYR LYS ARG THR LYS HIS HIS HIS SEQRES 15 A 185 HIS HIS HIS SEQRES 1 B 185 GLU THR GLY GLU VAL THR LEU LEU ASP SER ARG SER VAL SEQRES 2 B 185 GLN GLY GLU LEU GLY TRP ILE ALA SER PRO LEU GLU GLY SEQRES 3 B 185 GLY TRP GLU GLU VAL SER ILE MET ASP GLU LYS ASN THR SEQRES 4 B 185 PRO ILE ARG THR TYR GLN VAL CYS ASN VAL MET GLU PRO SEQRES 5 B 185 SER GLN ASN ASN TRP LEU ARG THR ASP TRP ILE THR ARG SEQRES 6 B 185 GLU GLY ALA GLN ARG VAL TYR ILE GLU ILE LYS PHE THR SEQRES 7 B 185 LEU ARG ASP CYS ASN SER LEU PRO GLY VAL MET GLY THR SEQRES 8 B 185 CYS LYS GLU THR PHE ASN LEU TYR TYR TYR GLU SER ASP SEQRES 9 B 185 ASN ASP LYS GLU ARG PHE ILE ARG GLU ASN GLN PHE VAL SEQRES 10 B 185 LYS ILE ASP THR ILE ALA ALA ASP GLU SER PHE THR GLN SEQRES 11 B 185 VAL ASP ILE GLY ASP ARG ILE MET LYS LEU ASN THR GLU SEQRES 12 B 185 ILE ARG ASP VAL GLY PRO LEU SER LYS LYS GLY PHE TYR SEQRES 13 B 185 LEU ALA PHE GLN ASP VAL GLY ALA CYS ILE ALA LEU VAL SEQRES 14 B 185 SER VAL ARG VAL PHE TYR LYS ARG THR LYS HIS HIS HIS SEQRES 15 B 185 HIS HIS HIS HET POL A1210 4 HET POL A1211 4 HET POL A1212 4 HET POL B1205 4 HET POL B1206 4 HETNAM POL N-PROPANOL HETSYN POL 1-PROPONOL FORMUL 3 POL 5(C3 H8 O) FORMUL 8 HOH *297(H2 O) HELIX 1 1 ARG A 37 VAL A 39 5 3 HELIX 2 2 ASP A 107 LEU A 111 5 5 HELIX 3 3 ARG A 138 PHE A 142 5 5 HELIX 4 4 ARG B 37 VAL B 39 5 3 HELIX 5 5 ASP B 107 LEU B 111 5 5 HELIX 6 6 ARG B 138 PHE B 142 5 5 SHEET 1 AA 4 VAL A 31 ASP A 35 0 SHEET 2 AA 4 CYS A 191 TYR A 201 -1 O VAL A 199 N LEU A 33 SHEET 3 AA 4 THR A 65 CYS A 73 -1 O TYR A 70 N LEU A 194 SHEET 4 AA 4 GLU A 55 ASP A 61 -1 O GLU A 55 N GLN A 71 SHEET 1 AB 2 VAL A 31 ASP A 35 0 SHEET 2 AB 2 CYS A 191 TYR A 201 -1 O VAL A 199 N LEU A 33 SHEET 1 AC 5 ILE A 46 SER A 48 0 SHEET 2 AC 5 ASN A 82 ARG A 85 -1 O TRP A 83 N SER A 48 SHEET 3 AC 5 TYR A 182 ASP A 187 -1 O PHE A 185 N LEU A 84 SHEET 4 AC 5 THR A 121 TYR A 127 -1 O ASN A 123 N GLN A 186 SHEET 5 AC 5 VAL A 143 ALA A 149 -1 O VAL A 143 N TYR A 126 SHEET 1 BA 4 VAL B 31 ASP B 35 0 SHEET 2 BA 4 CYS B 191 TYR B 201 -1 O VAL B 199 N LEU B 33 SHEET 3 BA 4 PRO B 66 CYS B 73 -1 O TYR B 70 N LEU B 194 SHEET 4 BA 4 GLU B 55 MET B 60 -1 O GLU B 55 N GLN B 71 SHEET 1 BB 2 VAL B 31 ASP B 35 0 SHEET 2 BB 2 CYS B 191 TYR B 201 -1 O VAL B 199 N LEU B 33 SHEET 1 BC 5 ILE B 46 SER B 48 0 SHEET 2 BC 5 ASN B 82 ARG B 85 -1 O TRP B 83 N SER B 48 SHEET 3 BC 5 TYR B 182 ASP B 187 -1 O PHE B 185 N LEU B 84 SHEET 4 BC 5 THR B 121 TYR B 127 -1 O ASN B 123 N GLN B 186 SHEET 5 BC 5 VAL B 143 ALA B 149 -1 O VAL B 143 N TYR B 126 SSBOND 1 CYS A 73 CYS A 191 1555 1555 2.08 SSBOND 2 CYS A 108 CYS A 118 1555 1555 2.03 SSBOND 3 CYS B 73 CYS B 191 1555 1555 2.07 SSBOND 4 CYS B 108 CYS B 118 1555 1555 2.06 CISPEP 1 SER A 48 PRO A 49 0 1.91 CISPEP 2 SER A 48 PRO A 49 0 2.06 CISPEP 3 GLY A 174 PRO A 175 0 2.34 CISPEP 4 SER B 48 PRO B 49 0 1.53 CISPEP 5 GLY B 174 PRO B 175 0 0.95 SITE 1 AC1 2 CYS B 73 HOH B2143 SITE 1 AC2 4 SER A 36 ARG A 37 LEU A 194 VAL A 195 SITE 1 AC3 5 TRP A 88 THR A 90 LYS A 179 HOH A2153 SITE 2 AC3 5 HOH B2101 SITE 1 AC4 6 ASP A 35 ARG A 37 GLU A 100 LYS A 102 SITE 2 AC4 6 SER A 196 ARG A 198 SITE 1 AC5 4 ARG B 96 TYR B 98 TYR B 201 LYS B 202 CRYST1 48.736 73.228 54.420 90.00 98.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020519 0.000000 0.003012 0.00000 SCALE2 0.000000 0.013656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018572 0.00000