PDB Short entry for 2WO2 HEADER TRANSFERASE/SIGNALING PROTEIN 21-JUL-09 2WO2 TITLE CRYSTAL STRUCTURE OF THE EPHA4-EPHRINB2 COMPLEX CAVEAT 2WO2 NAG B 1168 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EPHRIN LIGAND BINDING DOMAIN, RESIDUES 30-202; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR SEK, RECEPTOR PROTEIN- COMPND 6 TYROSINE KINASE HEK8, TYROSINE-PROTEIN KINASE TYRO1; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: EPHRIN-B2; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: EPH RECEPTOR BINDING DOMAIN, RESIDUES 27-167; COMPND 13 SYNONYM: EPH-RELATED RECEPTOR TYROSINE KINASE LIGAND 5, LERK-5, HTK COMPND 14 LIGAND, HTK-L; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS TRANSFERASE-SIGNALING PROTEIN COMPLEX, OSTEOGENESIS, AXON GUIDANCE, KEYWDS 2 CELL SURFACE RECEPTOR, DEVELOPMENTAL PROTEIN, NEUROGENESIS, CELL KEYWDS 3 SIGNALING EXPDTA X-RAY DIFFRACTION AUTHOR T.A.BOWDEN,A.R.ARICESCU,J.E.NETTLESHIP,C.SIEBOLD,N.RAHMAN-HUQ, AUTHOR 2 R.J.OWENS,D.I.STUART,E.Y.JONES REVDAT 7 20-DEC-23 2WO2 1 HETSYN REVDAT 6 29-JUL-20 2WO2 1 CAVEAT COMPND REMARK HETNAM REVDAT 6 2 1 LINK SITE REVDAT 5 01-JUL-20 2WO2 1 LINK REVDAT 4 28-FEB-18 2WO2 1 SOURCE REVDAT 3 09-NOV-11 2WO2 1 JRNL REVDAT 2 13-JUL-11 2WO2 1 VERSN REVDAT 1 27-OCT-09 2WO2 0 JRNL AUTH T.A.BOWDEN,A.R.ARICESCU,J.E.NETTLESHIP,C.SIEBOLD, JRNL AUTH 2 N.RAHMAN-HUQ,R.J.OWENS,D.I.STUART,E.Y.JONES JRNL TITL STRUCTURAL PLASTICITY OF EPH-RECEPTOR A4 FACILITATES JRNL TITL 2 CROSS-CLASS EPHRIN SIGNALLING JRNL REF STRUCTURE V. 17 1386 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19836338 JRNL DOI 10.1016/J.STR.2009.07.018 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 11062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 774 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.5180 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.6810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2533 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 60.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.90000 REMARK 3 B22 (A**2) : -0.90000 REMARK 3 B33 (A**2) : 1.35000 REMARK 3 B12 (A**2) : -0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.320 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2602 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1789 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3518 ; 1.064 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4362 ; 0.727 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 6.207 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;36.651 ;25.118 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 471 ;13.628 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.187 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2861 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 512 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1557 ; 0.295 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 636 ; 0.036 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2526 ; 0.561 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1045 ; 0.704 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 992 ; 1.235 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 205 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5153 55.4395 17.8607 REMARK 3 T TENSOR REMARK 3 T11: 0.0726 T22: 0.0792 REMARK 3 T33: 0.0305 T12: 0.0532 REMARK 3 T13: -0.0070 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 2.8584 L22: 3.4343 REMARK 3 L33: 3.3445 L12: 0.1795 REMARK 3 L13: -0.0206 L23: -0.9439 REMARK 3 S TENSOR REMARK 3 S11: 0.0827 S12: 0.1559 S13: 0.1114 REMARK 3 S21: -0.1691 S22: -0.0124 S23: 0.1727 REMARK 3 S31: -0.0833 S32: -0.0580 S33: -0.0703 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 167 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2396 29.9131 13.1842 REMARK 3 T TENSOR REMARK 3 T11: 0.0731 T22: 0.0522 REMARK 3 T33: 0.3269 T12: -0.0065 REMARK 3 T13: 0.0662 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 3.8099 L22: 3.0426 REMARK 3 L33: 3.8933 L12: -0.4202 REMARK 3 L13: 1.5680 L23: 1.7588 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: 0.1773 S13: -0.8201 REMARK 3 S21: 0.3335 S22: 0.0170 S23: 0.4585 REMARK 3 S31: 0.4600 S32: 0.0362 S33: -0.0655 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1290040487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : SI(111) MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11645 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 43.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1KGY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 6000, 1 M LITHIUM CHLORIDE, REMARK 280 AND 100 MM MES PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.87300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.74600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.80950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.68250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 7.93650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 27 REMARK 465 HIS A 206 REMARK 465 HIS A 207 REMARK 465 HIS A 208 REMARK 465 HIS A 209 REMARK 465 HIS A 210 REMARK 465 HIS A 211 REMARK 465 GLU B 24 REMARK 465 THR B 25 REMARK 465 GLY B 26 REMARK 465 SER B 27 REMARK 465 SER B 67 REMARK 465 LYS B 68 REMARK 465 THR B 69 REMARK 465 VAL B 70 REMARK 465 GLY B 168 REMARK 465 THR B 169 REMARK 465 LYS B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN B 39 C2 NAG B 1168 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 73 60.88 -150.54 REMARK 500 ASN A 74 53.54 -100.09 REMARK 500 SER B 38 52.45 -92.69 REMARK 500 ASN B 147 124.86 -38.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VSM RELATED DB: PDB REMARK 900 NIPAH VIRUS ATTACHMENT GLYCOPROTEIN IN COMPLEX WITH HUMAN CELL REMARK 900 SURFACE RECEPTOR EPHRINB2 REMARK 900 RELATED ID: 2VSK RELATED DB: PDB REMARK 900 HENDRA VIRUS ATTACHMENT GLYCOPROTEIN IN COMPLEX WITH HUMAN CELL REMARK 900 SURFACE RECEPTOR EPHRINB2 REMARK 900 RELATED ID: 2WO1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EPHA4 LIGAND BINDING DOMAIN REMARK 900 RELATED ID: 2WO3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE EPHA4-EPHRINA2 COMPLEX DBREF 2WO2 A 30 202 UNP P54764 EPHA4_HUMAN 30 202 DBREF 2WO2 B 27 167 UNP P52799 EFNB2_HUMAN 27 167 SEQADV 2WO2 GLU A 27 UNP P54764 EXPRESSION TAG SEQADV 2WO2 THR A 28 UNP P54764 EXPRESSION TAG SEQADV 2WO2 GLY A 29 UNP P54764 EXPRESSION TAG SEQADV 2WO2 ARG A 203 UNP P54764 EXPRESSION TAG SEQADV 2WO2 THR A 204 UNP P54764 EXPRESSION TAG SEQADV 2WO2 LYS A 205 UNP P54764 EXPRESSION TAG SEQADV 2WO2 HIS A 206 UNP P54764 EXPRESSION TAG SEQADV 2WO2 HIS A 207 UNP P54764 EXPRESSION TAG SEQADV 2WO2 HIS A 208 UNP P54764 EXPRESSION TAG SEQADV 2WO2 HIS A 209 UNP P54764 EXPRESSION TAG SEQADV 2WO2 HIS A 210 UNP P54764 EXPRESSION TAG SEQADV 2WO2 HIS A 211 UNP P54764 EXPRESSION TAG SEQADV 2WO2 GLU B 24 UNP P52799 EXPRESSION TAG SEQADV 2WO2 THR B 25 UNP P52799 EXPRESSION TAG SEQADV 2WO2 GLY B 26 UNP P52799 EXPRESSION TAG SEQADV 2WO2 GLY B 168 UNP P52799 EXPRESSION TAG SEQADV 2WO2 THR B 169 UNP P52799 EXPRESSION TAG SEQADV 2WO2 LYS B 170 UNP P52799 EXPRESSION TAG SEQADV 2WO2 HIS B 171 UNP P52799 EXPRESSION TAG SEQADV 2WO2 HIS B 172 UNP P52799 EXPRESSION TAG SEQADV 2WO2 HIS B 173 UNP P52799 EXPRESSION TAG SEQADV 2WO2 HIS B 174 UNP P52799 EXPRESSION TAG SEQADV 2WO2 HIS B 175 UNP P52799 EXPRESSION TAG SEQADV 2WO2 HIS B 176 UNP P52799 EXPRESSION TAG SEQRES 1 A 185 GLU THR GLY GLU VAL THR LEU LEU ASP SER ARG SER VAL SEQRES 2 A 185 GLN GLY GLU LEU GLY TRP ILE ALA SER PRO LEU GLU GLY SEQRES 3 A 185 GLY TRP GLU GLU VAL SER ILE MET ASP GLU LYS ASN THR SEQRES 4 A 185 PRO ILE ARG THR TYR GLN VAL CYS ASN VAL MET GLU PRO SEQRES 5 A 185 SER GLN ASN ASN TRP LEU ARG THR ASP TRP ILE THR ARG SEQRES 6 A 185 GLU GLY ALA GLN ARG VAL TYR ILE GLU ILE LYS PHE THR SEQRES 7 A 185 LEU ARG ASP CYS ASN SER LEU PRO GLY VAL MET GLY THR SEQRES 8 A 185 CYS LYS GLU THR PHE ASN LEU TYR TYR TYR GLU SER ASP SEQRES 9 A 185 ASN ASP LYS GLU ARG PHE ILE ARG GLU ASN GLN PHE VAL SEQRES 10 A 185 LYS ILE ASP THR ILE ALA ALA ASP GLU SER PHE THR GLN SEQRES 11 A 185 VAL ASP ILE GLY ASP ARG ILE MET LYS LEU ASN THR GLU SEQRES 12 A 185 ILE ARG ASP VAL GLY PRO LEU SER LYS LYS GLY PHE TYR SEQRES 13 A 185 LEU ALA PHE GLN ASP VAL GLY ALA CYS ILE ALA LEU VAL SEQRES 14 A 185 SER VAL ARG VAL PHE TYR LYS ARG THR LYS HIS HIS HIS SEQRES 15 A 185 HIS HIS HIS SEQRES 1 B 153 GLU THR GLY SER ILE VAL LEU GLU PRO ILE TYR TRP ASN SEQRES 2 B 153 SER SER ASN SER LYS PHE LEU PRO GLY GLN GLY LEU VAL SEQRES 3 B 153 LEU TYR PRO GLN ILE GLY ASP LYS LEU ASP ILE ILE CYS SEQRES 4 B 153 PRO LYS VAL ASP SER LYS THR VAL GLY GLN TYR GLU TYR SEQRES 5 B 153 TYR LYS VAL TYR MET VAL ASP LYS ASP GLN ALA ASP ARG SEQRES 6 B 153 CYS THR ILE LYS LYS GLU ASN THR PRO LEU LEU ASN CYS SEQRES 7 B 153 ALA LYS PRO ASP GLN ASP ILE LYS PHE THR ILE LYS PHE SEQRES 8 B 153 GLN GLU PHE SER PRO ASN LEU TRP GLY LEU GLU PHE GLN SEQRES 9 B 153 LYS ASN LYS ASP TYR TYR ILE ILE SER THR SER ASN GLY SEQRES 10 B 153 SER LEU GLU GLY LEU ASP ASN GLN GLU GLY GLY VAL CYS SEQRES 11 B 153 GLN THR ARG ALA MET LYS ILE LEU MET LYS VAL GLY GLN SEQRES 12 B 153 ASP GLY THR LYS HIS HIS HIS HIS HIS HIS MODRES 2WO2 ASN B 36 ASN GLYCOSYLATION SITE MODRES 2WO2 ASN B 39 ASN GLYCOSYLATION SITE HET NAG B1168 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG C8 H15 N O6 FORMUL 4 HOH *49(H2 O) HELIX 1 1 ARG A 37 VAL A 39 5 3 HELIX 2 2 ASP A 107 LEU A 111 5 5 HELIX 3 3 ARG A 138 PHE A 142 5 5 HELIX 4 4 ASP B 82 CYS B 89 1 8 SHEET 1 AA 4 VAL A 31 ASP A 35 0 SHEET 2 AA 4 CYS A 191 TYR A 201 -1 O VAL A 199 N LEU A 33 SHEET 3 AA 4 PRO A 66 CYS A 73 -1 O TYR A 70 N LEU A 194 SHEET 4 AA 4 GLU A 55 MET A 60 -1 O GLU A 55 N GLN A 71 SHEET 1 AB 2 VAL A 31 ASP A 35 0 SHEET 2 AB 2 CYS A 191 TYR A 201 -1 O VAL A 199 N LEU A 33 SHEET 1 AC 5 ILE A 46 SER A 48 0 SHEET 2 AC 5 ASN A 82 ARG A 85 -1 O TRP A 83 N SER A 48 SHEET 3 AC 5 TYR A 182 ASP A 187 -1 O PHE A 185 N LEU A 84 SHEET 4 AC 5 THR A 121 TYR A 127 -1 O ASN A 123 N GLN A 186 SHEET 5 AC 5 VAL A 143 ALA A 149 -1 O VAL A 143 N TYR A 126 SHEET 1 BA 3 ILE B 33 TYR B 34 0 SHEET 2 BA 3 LYS B 57 ILE B 61 1 O ASP B 59 N ILE B 33 SHEET 3 BA 3 LYS B 109 LYS B 113 -1 O PHE B 110 N ILE B 60 SHEET 1 BB 5 VAL B 49 LEU B 50 0 SHEET 2 BB 5 LYS B 159 VAL B 164 1 O LEU B 161 N LEU B 50 SHEET 3 BB 5 LYS B 130 ILE B 135 -1 O LYS B 130 N VAL B 164 SHEET 4 BB 5 TYR B 76 VAL B 81 -1 O TYR B 79 N ILE B 135 SHEET 5 BB 5 PRO B 97 CYS B 101 -1 N LEU B 98 O VAL B 78 SSBOND 1 CYS A 73 CYS A 191 1555 1555 2.04 SSBOND 2 CYS A 108 CYS A 118 1555 1555 2.05 SSBOND 3 CYS B 62 CYS B 101 1555 1555 2.02 SSBOND 4 CYS B 89 CYS B 153 1555 1555 2.04 LINK ND2 ASN B 36 C1 NAG B1168 1555 1555 1.46 LINK ND2 ASN B 39 C1 NAG B1168 1555 1555 1.48 CISPEP 1 SER A 48 PRO A 49 0 -1.17 CISPEP 2 GLY A 174 PRO A 175 0 7.39 CRYST1 107.371 107.371 47.619 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009314 0.005377 0.000000 0.00000 SCALE2 0.000000 0.010754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021000 0.00000