PDB Short entry for 2WQN HEADER TRANSFERASE 24-AUG-09 2WQN TITLE STRUCTURE OF ADP-BOUND HUMAN NEK7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE NEK7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NIMA-RELATED PROTEIN KINASE 7; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RPIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS ATP-BINDING, POLYMORPHISM, METAL-BINDING, KEYWDS 2 SERINE/THREONINE-PROTEIN KINASE, MITOSIS, CYTOPLASM, KEYWDS 3 TRANSFERASE, PHOSPHOPROTEIN, PROTEIN KINASE, KEYWDS 4 NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.W.RICHARDS,R.BAYLISS REVDAT 1 08-DEC-09 2WQN 0 JRNL AUTH M.W.RICHARDS,L.O'REGAN,C.MAS-DROUX,J.M.BLOT, JRNL AUTH 2 J.CHEUNG,S.HOELDER,A.M.FRY,R.BAYLISS JRNL TITL AN AUTOINHIBITORY TYROSINE MOTIF IN THE JRNL TITL 2 CELL-CYCLE- REGULATED NEK7 KINASE IS RELEASED JRNL TITL 3 THROUGH BINDING OF NEK9. JRNL REF MOL.CELL V. 36 560 2009 JRNL REFN ISSN 1097-2765 JRNL PMID 19941817 JRNL DOI 10.1016/J.MOLCEL.2009.09.038 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.300 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.180 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.03 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.64 REMARK 3 NUMBER OF REFLECTIONS : 18172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1920 REMARK 3 R VALUE (WORKING SET) : 0.1906 REMARK 3 FREE R VALUE : 0.2205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.9 REMARK 3 FREE R VALUE TEST SET COUNT : 900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1880 - 4.1785 0.99 3109 138 0.1958 0.2157 REMARK 3 2 4.1785 - 3.3170 0.99 2977 155 0.1662 0.2021 REMARK 3 3 3.3170 - 2.8978 0.99 2941 145 0.1914 0.2192 REMARK 3 4 2.8978 - 2.6329 0.96 2814 147 0.1887 0.2341 REMARK 3 5 2.6329 - 2.4442 0.95 2755 161 0.1997 0.2339 REMARK 3 6 2.4442 - 2.3001 0.92 2676 154 0.2156 0.2620 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.367 REMARK 3 B_SOL : 68.329 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.29 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -11.8151 REMARK 3 B22 (A**2) : -5.5089 REMARK 3 B33 (A**2) : 17.3240 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : -0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2170 REMARK 3 ANGLE : 1.035 2946 REMARK 3 CHIRALITY : 0.065 320 REMARK 3 PLANARITY : 0.004 375 REMARK 3 DIHEDRAL : 17.121 805 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 21:117) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3849 -40.0095 -41.8678 REMARK 3 T TENSOR REMARK 3 T11: 0.2348 T22: 0.3001 REMARK 3 T33: 0.2243 T12: 0.0664 REMARK 3 T13: 0.0349 T23: 0.1199 REMARK 3 L TENSOR REMARK 3 L11: 3.6659 L22: 4.0437 REMARK 3 L33: 2.0337 L12: 2.4325 REMARK 3 L13: 0.2635 L23: 0.4313 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.8845 S13: -0.3008 REMARK 3 S21: -0.9729 S22: 0.0488 S23: -0.1017 REMARK 3 S31: 0.2824 S32: -0.0289 S33: 0.0083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 118:203) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1140 -18.1355 -41.5396 REMARK 3 T TENSOR REMARK 3 T11: 0.0728 T22: 0.0519 REMARK 3 T33: 0.2264 T12: -0.0238 REMARK 3 T13: -0.0429 T23: 0.0839 REMARK 3 L TENSOR REMARK 3 L11: 5.4096 L22: 5.3496 REMARK 3 L33: 2.3219 L12: -0.5634 REMARK 3 L13: 0.8498 L23: -1.1252 REMARK 3 S TENSOR REMARK 3 S11: 0.1756 S12: 0.1177 S13: -0.9442 REMARK 3 S21: -0.3945 S22: -0.0733 S23: 1.0608 REMARK 3 S31: 0.1076 S32: -0.1542 S33: -0.2301 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 204:254) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9935 -12.0427 -55.3071 REMARK 3 T TENSOR REMARK 3 T11: 0.3405 T22: 0.1960 REMARK 3 T33: 0.0524 T12: 0.0211 REMARK 3 T13: -0.0316 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 1.3845 L22: 1.5965 REMARK 3 L33: 2.0368 L12: 0.1355 REMARK 3 L13: -0.9760 L23: 0.1735 REMARK 3 S TENSOR REMARK 3 S11: 0.1619 S12: 0.6662 S13: -0.1432 REMARK 3 S21: -0.6912 S22: 0.0627 S23: 0.1902 REMARK 3 S31: 0.1888 S32: -0.0800 S33: 0.0026 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 255:300) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4304 -4.5341 -42.1234 REMARK 3 T TENSOR REMARK 3 T11: 0.1100 T22: 0.0301 REMARK 3 T33: 0.0464 T12: -0.0730 REMARK 3 T13: 0.0179 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 4.5490 L22: 4.1380 REMARK 3 L33: 2.1159 L12: -0.1371 REMARK 3 L13: 0.5648 L23: -0.0765 REMARK 3 S TENSOR REMARK 3 S11: 0.3352 S12: -0.2396 S13: 0.7673 REMARK 3 S21: 0.0332 S22: -0.1240 S23: 0.0956 REMARK 3 S31: -0.3441 S32: 0.0511 S33: 0.2271 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WQN COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-09. REMARK 100 THE PDBE ID CODE IS EBI-40534. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97210 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.30 REMARK 200 RESOLUTION RANGE LOW (A) : 66.20 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.8 REMARK 200 R MERGE (I) : 0.12 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.9 REMARK 200 R MERGE FOR SHELL (I) : 0.28 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WQM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES 7.5, 15% PEG REMARK 280 5000MME, 400MM AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.41750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.55400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.92550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.41750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.55400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.92550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.41750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.55400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.92550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.41750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.55400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.92550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A1302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 GLN A 6 REMARK 465 GLY A 7 REMARK 465 MET A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 GLN A 15 REMARK 465 PHE A 16 REMARK 465 GLN A 17 REMARK 465 PRO A 18 REMARK 465 GLN A 19 REMARK 465 LYS A 20 REMARK 465 GLY A 181 REMARK 465 LEU A 182 REMARK 465 GLY A 183 REMARK 465 ARG A 184 REMARK 465 PHE A 185 REMARK 465 PHE A 186 REMARK 465 SER A 187 REMARK 465 SER A 188 REMARK 465 LYS A 189 REMARK 465 THR A 190 REMARK 465 THR A 191 REMARK 465 ALA A 192 REMARK 465 ALA A 193 REMARK 465 HIS A 194 REMARK 465 SER A 195 REMARK 465 LEU A 196 REMARK 465 VAL A 197 REMARK 465 GLY A 198 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 LYS A 240 REMARK 465 SER A 301 REMARK 465 SER A 302 REMARK 465 LEU A 303 REMARK 465 GLU A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 44 CG CD OE1 NE2 REMARK 470 PHE A 45 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 70 CG CD1 CD2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 ILE A 102 CG1 CG2 CD1 REMARK 470 THR A 199 OG1 CG2 REMARK 470 LYS A 248 CG CD CE NZ REMARK 470 GLU A 280 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 OD1 ASN A 29 O ALA A 171 8544 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 70 -20.95 -142.60 REMARK 500 ARG A 160 -19.52 86.13 REMARK 500 ASP A 161 55.28 -145.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 209 NE2 REMARK 620 2 CYS A 247 SG 109.8 REMARK 620 3 HIS A 209 NE2 106.5 108.6 REMARK 620 4 CYS A 247 SG 108.6 113.3 109.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WQM RELATED DB: PDB REMARK 900 STRUCTURE OF APO HUMAN NEK7 REMARK 900 RELATED ID: 2WQO RELATED DB: PDB REMARK 900 NEK2 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ADDITION OF C-TERMINAL HIS6-TAG AND LINKER LEHHHHHH DBREF 2WQN A 1 302 UNP Q8TDX7 NEK7_HUMAN 1 302 DBREF 2WQN A 303 310 PDB 2WQN 2WQN 303 310 SEQRES 1 A 310 MET ASP GLU GLN SER GLN GLY MET GLN GLY PRO PRO VAL SEQRES 2 A 310 PRO GLN PHE GLN PRO GLN LYS ALA LEU ARG PRO ASP MET SEQRES 3 A 310 GLY TYR ASN THR LEU ALA ASN PHE ARG ILE GLU LYS LYS SEQRES 4 A 310 ILE GLY ARG GLY GLN PHE SER GLU VAL TYR ARG ALA ALA SEQRES 5 A 310 CYS LEU LEU ASP GLY VAL PRO VAL ALA LEU LYS LYS VAL SEQRES 6 A 310 GLN ILE PHE ASP LEU MET ASP ALA LYS ALA ARG ALA ASP SEQRES 7 A 310 CYS ILE LYS GLU ILE ASP LEU LEU LYS GLN LEU ASN HIS SEQRES 8 A 310 PRO ASN VAL ILE LYS TYR TYR ALA SER PHE ILE GLU ASP SEQRES 9 A 310 ASN GLU LEU ASN ILE VAL LEU GLU LEU ALA ASP ALA GLY SEQRES 10 A 310 ASP LEU SER ARG MET ILE LYS HIS PHE LYS LYS GLN LYS SEQRES 11 A 310 ARG LEU ILE PRO GLU ARG THR VAL TRP LYS TYR PHE VAL SEQRES 12 A 310 GLN LEU CYS SER ALA LEU GLU HIS MET HIS SER ARG ARG SEQRES 13 A 310 VAL MET HIS ARG ASP ILE LYS PRO ALA ASN VAL PHE ILE SEQRES 14 A 310 THR ALA THR GLY VAL VAL LYS LEU GLY ASP LEU GLY LEU SEQRES 15 A 310 GLY ARG PHE PHE SER SER LYS THR THR ALA ALA HIS SER SEQRES 16 A 310 LEU VAL GLY THR PRO TYR TYR MET SER PRO GLU ARG ILE SEQRES 17 A 310 HIS GLU ASN GLY TYR ASN PHE LYS SER ASP ILE TRP SER SEQRES 18 A 310 LEU GLY CYS LEU LEU TYR GLU MET ALA ALA LEU GLN SER SEQRES 19 A 310 PRO PHE TYR GLY ASP LYS MET ASN LEU TYR SER LEU CYS SEQRES 20 A 310 LYS LYS ILE GLU GLN CYS ASP TYR PRO PRO LEU PRO SER SEQRES 21 A 310 ASP HIS TYR SER GLU GLU LEU ARG GLN LEU VAL ASN MET SEQRES 22 A 310 CYS ILE ASN PRO ASP PRO GLU LYS ARG PRO ASP VAL THR SEQRES 23 A 310 TYR VAL TYR ASP VAL ALA LYS ARG MET HIS ALA CYS THR SEQRES 24 A 310 ALA SER SER LEU GLU HIS HIS HIS HIS HIS HIS HET ADP A1301 27 HET NI A1302 1 HET MG A1303 1 HET SO4 A1304 5 HETNAM SO4 SULFATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NI NICKEL (II) ION FORMUL 2 SO4 O4 S 2- FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 NI NI 2+ FORMUL 6 HOH *119(H2 O1) HELIX 1 1 THR A 30 ALA A 32 5 3 HELIX 2 2 ASP A 72 GLN A 88 1 17 HELIX 3 3 ASP A 118 GLN A 129 1 12 HELIX 4 4 PRO A 134 ARG A 155 1 22 HELIX 5 5 LYS A 163 VAL A 167 5 5 HELIX 6 6 SER A 204 HIS A 209 1 6 HELIX 7 7 ASN A 214 LEU A 222 1 9 HELIX 8 8 CYS A 224 LEU A 232 1 9 HELIX 9 9 ASN A 242 GLN A 252 1 11 HELIX 10 10 SER A 264 ILE A 275 1 12 HELIX 11 11 ASP A 278 ARG A 282 5 5 HELIX 12 12 ASP A 284 CYS A 298 1 15 SHEET 1 AA 5 PHE A 34 LYS A 39 0 SHEET 2 AA 5 SER A 46 CYS A 53 -1 O ARG A 50 N GLU A 37 SHEET 3 AA 5 PRO A 59 VAL A 65 -1 O VAL A 60 N ALA A 51 SHEET 4 AA 5 GLU A 106 GLU A 112 -1 O LEU A 107 N VAL A 65 SHEET 5 AA 5 TYR A 97 GLU A 103 -1 N TYR A 98 O VAL A 110 SHEET 1 AB 2 PHE A 168 ILE A 169 0 SHEET 2 AB 2 VAL A 175 LYS A 176 -1 O LYS A 176 N PHE A 168 LINK NI NI A1302 NE2 HIS A 209 1555 3554 2.12 LINK NI NI A1302 SG CYS A 247 1555 3554 2.39 LINK NI NI A1302 SG CYS A 247 1555 1555 2.38 LINK NI NI A1302 NE2 HIS A 209 1555 1555 2.12 LINK MG MG A1303 O2A ADP A1301 1555 1555 2.83 SITE 1 AC1 11 GLY A 43 GLN A 44 PHE A 45 SER A 46 SITE 2 AC1 11 VAL A 48 ALA A 61 LYS A 63 GLU A 112 SITE 3 AC1 11 ALA A 114 ASP A 179 MG A1303 SITE 1 AC2 2 HIS A 209 CYS A 247 SITE 1 AC3 2 GLN A 44 ADP A1301 SITE 1 AC4 4 ARG A 23 ARG A 136 THR A 137 LYS A 140 CRYST1 46.835 133.108 131.851 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021352 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007584 0.00000