PDB Short entry for 2WY7 HEADER IMMUNE SYSTEM 13-NOV-09 2WY7 TITLE STAPHYLOCOCCUS AUREUS COMPLEMENT SUBVERSION PROTEIN SBI-IV IN COMPLEX TITLE 2 WITH COMPLEMENT FRAGMENT C3D REVEALING AN ALTERNATIVE BINDING MODE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT C3D FRAGMENT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C3D, RESIDUES 996-1303; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: IGG-BINDING PROTEIN; COMPND 9 CHAIN: Q; COMPND 10 FRAGMENT: SBI-IV, RESIDUES 198-266; COMPND 11 SYNONYM: SBI; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 12 ORGANISM_TAXID: 1280; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS IMMUNE SYSTEM, IMMUNE RESPONSE, INNATE IMMUNITY, COMPLEMENT PATHWAY, KEYWDS 2 INFLAMMATORY RESPONSE EXPDTA X-RAY DIFFRACTION AUTHOR E.A.CLARK,S.CRENNELL,A.UPADHYAY,J.D.MACKAY,S.BAGBY,J.M.VAN DEN ELSEN REVDAT 4 20-DEC-23 2WY7 1 REMARK REVDAT 3 18-SEP-13 2WY7 1 REMARK VERSN HETSYN REVDAT 2 13-JUL-11 2WY7 1 JRNL HETSYN REVDAT 1 01-DEC-10 2WY7 0 JRNL AUTH E.A.CLARK,S.CRENNELL,A.UPADHYAY,A.V.ZOZULYA,J.D.MACKAY, JRNL AUTH 2 D.I.SVERGUN,S.BAGBY,J.M.VAN DEN ELSEN JRNL TITL A STRUCTURAL BASIS FOR STAPHYLOCOCCAL COMPLEMENT SUBVERSION: JRNL TITL 2 X-RAY STRUCTURE OF THE COMPLEMENT- BINDING DOMAIN OF JRNL TITL 3 STAPHYLOCOCCUS AUREUS PROTEIN SBI IN COMPLEX WITH LIGAND JRNL TITL 4 C3D. JRNL REF MOL.IMMUNOL. V. 48 452 2011 JRNL REFN ISSN 0161-5890 JRNL PMID 21055811 JRNL DOI 10.1016/J.MOLIMM.2010.09.017 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 37546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1982 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2419 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2820 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 335 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2950 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3996 ; 1.231 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 4.865 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;36.702 ;25.324 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 544 ;13.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.446 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 445 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2210 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1534 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2062 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 251 ; 0.213 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 38 ; 0.161 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1875 ; 0.872 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2910 ; 1.324 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1229 ; 1.952 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1076 ; 2.998 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THIS ENTRY HAS THE SAME CRYSTAL DATA AS PDB ENTRY REMARK 3 2WY8. HOWEVER, A SECOND BINDING MODE WAS OBSERVED IN THE REMARK 3 CRYSTALLIZED COMPLEX AND THE ASYMMETRIC UNIT WITH THIS (NEW REMARK 3 FUNCTIONAL) COMPLEX HAS BEEN REFINED SEPARATELY IN THIS REMARK 3 DEPOSITION REMARK 4 REMARK 4 2WY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1290041721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9702 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : DENZO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41186 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 96.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3710. REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 1C3D REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS PH8.0, 200MM NACL, 20%(W/V) REMARK 280 PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.71500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.71500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS1010 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 LEU A 9 REMARK 465 ASP A 10 REMARK 465 ASP A 302 REMARK 465 HIS A 303 REMARK 465 GLN A 304 REMARK 465 GLU A 305 REMARK 465 LEU A 306 REMARK 465 ASN A 307 REMARK 465 LEU A 308 REMARK 465 ASP A 309 REMARK 465 VAL A 310 REMARK 465 SER A 311 REMARK 465 LEU A 312 REMARK 465 GLN A 313 REMARK 465 LEU A 314 REMARK 465 PRO A 315 REMARK 465 SER A 316 REMARK 465 ARG A 317 REMARK 465 MET Q 1 REMARK 465 ARG Q 2 REMARK 465 GLY Q 3 REMARK 465 SER Q 4 REMARK 465 HIS Q 5 REMARK 465 HIS Q 6 REMARK 465 HIS Q 7 REMARK 465 HIS Q 8 REMARK 465 HIS Q 9 REMARK 465 HIS Q 10 REMARK 465 MET Q 11 REMARK 465 LYS Q 78 REMARK 465 VAL Q 79 REMARK 465 ALA Q 80 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 268 O HOH A 2234 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 -155.91 -84.20 REMARK 500 SER A 78 -2.09 83.47 REMARK 500 LYS A 85 47.63 -93.39 REMARK 500 GLU A 152 53.59 -92.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WIN RELATED DB: PDB REMARK 900 C3 CONVERTASE (C3BBB) STABILIZED BY SCIN REMARK 900 RELATED ID: 2A73 RELATED DB: PDB REMARK 900 HUMAN COMPLEMENT COMPONENT C3 REMARK 900 RELATED ID: 2A74 RELATED DB: PDB REMARK 900 HUMAN COMPLEMENT COMPONENT C3C REMARK 900 RELATED ID: 1GHQ RELATED DB: PDB REMARK 900 CR2-C3D COMPLEX STRUCTURE REMARK 900 RELATED ID: 2WII RELATED DB: PDB REMARK 900 COMPLEMENT C3B IN COMPLEX WITH FACTOR H DOMAINS 1-4 REMARK 900 RELATED ID: 1W2S RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CR2 SCR 1-2 IN ITS COMPLEX WITH C3D BY X-RAY REMARK 900 SCATTERING REMARK 900 RELATED ID: 2HR0 RELATED DB: PDB REMARK 900 STRUCTURE OF COMPLEMENT C3B: INSIGHTS INTO COMPLEMENTACTIVATION AND REMARK 900 REGULATION REMARK 900 RELATED ID: 1C3D RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE OF C3D: A C3 FRAGMENT AND LIGAND FOR REMARK 900 COMPLEMENT RECEPTOR 2 REMARK 900 RELATED ID: 2WY8 RELATED DB: PDB REMARK 900 STAPHYLOCOCCUS AUREUS COMPLEMENT SUBVERSION PROTEIN SBI-IV IN REMARK 900 COMPLEX WITH COMPLEMENT FRAGMENT C3D DBREF 2WY7 A 10 317 UNP P01024 CO3_HUMAN 996 1303 DBREF 2WY7 Q 12 80 UNP C8LN82 C8LN82_STAAU 198 266 SEQADV 2WY7 MET A 8 UNP P01024 EXPRESSION TAG SEQADV 2WY7 LEU A 9 UNP P01024 EXPRESSION TAG SEQADV 2WY7 ALA A 24 UNP P01024 CYS 1010 ENGINEERED MUTATION SEQADV 2WY7 MET Q 1 UNP C8LN82 EXPRESSION TAG SEQADV 2WY7 ARG Q 2 UNP C8LN82 EXPRESSION TAG SEQADV 2WY7 GLY Q 3 UNP C8LN82 EXPRESSION TAG SEQADV 2WY7 SER Q 4 UNP C8LN82 EXPRESSION TAG SEQADV 2WY7 HIS Q 5 UNP C8LN82 EXPRESSION TAG SEQADV 2WY7 HIS Q 6 UNP C8LN82 EXPRESSION TAG SEQADV 2WY7 HIS Q 7 UNP C8LN82 EXPRESSION TAG SEQADV 2WY7 HIS Q 8 UNP C8LN82 EXPRESSION TAG SEQADV 2WY7 HIS Q 9 UNP C8LN82 EXPRESSION TAG SEQADV 2WY7 HIS Q 10 UNP C8LN82 EXPRESSION TAG SEQADV 2WY7 MET Q 11 UNP C8LN82 EXPRESSION TAG SEQRES 1 A 310 MET LEU ASP ALA GLU ARG LEU LYS HIS LEU ILE VAL THR SEQRES 2 A 310 PRO SER GLY ALA GLY GLU GLN ASN MET ILE GLY MET THR SEQRES 3 A 310 PRO THR VAL ILE ALA VAL HIS TYR LEU ASP GLU THR GLU SEQRES 4 A 310 GLN TRP GLU LYS PHE GLY LEU GLU LYS ARG GLN GLY ALA SEQRES 5 A 310 LEU GLU LEU ILE LYS LYS GLY TYR THR GLN GLN LEU ALA SEQRES 6 A 310 PHE ARG GLN PRO SER SER ALA PHE ALA ALA PHE VAL LYS SEQRES 7 A 310 ARG ALA PRO SER THR TRP LEU THR ALA TYR VAL VAL LYS SEQRES 8 A 310 VAL PHE SER LEU ALA VAL ASN LEU ILE ALA ILE ASP SER SEQRES 9 A 310 GLN VAL LEU CYS GLY ALA VAL LYS TRP LEU ILE LEU GLU SEQRES 10 A 310 LYS GLN LYS PRO ASP GLY VAL PHE GLN GLU ASP ALA PRO SEQRES 11 A 310 VAL ILE HIS GLN GLU MET ILE GLY GLY LEU ARG ASN ASN SEQRES 12 A 310 ASN GLU LYS ASP MET ALA LEU THR ALA PHE VAL LEU ILE SEQRES 13 A 310 SER LEU GLN GLU ALA LYS ASP ILE CYS GLU GLU GLN VAL SEQRES 14 A 310 ASN SER LEU PRO GLY SER ILE THR LYS ALA GLY ASP PHE SEQRES 15 A 310 LEU GLU ALA ASN TYR MET ASN LEU GLN ARG SER TYR THR SEQRES 16 A 310 VAL ALA ILE ALA GLY TYR ALA LEU ALA GLN MET GLY ARG SEQRES 17 A 310 LEU LYS GLY PRO LEU LEU ASN LYS PHE LEU THR THR ALA SEQRES 18 A 310 LYS ASP LYS ASN ARG TRP GLU ASP PRO GLY LYS GLN LEU SEQRES 19 A 310 TYR ASN VAL GLU ALA THR SER TYR ALA LEU LEU ALA LEU SEQRES 20 A 310 LEU GLN LEU LYS ASP PHE ASP PHE VAL PRO PRO VAL VAL SEQRES 21 A 310 ARG TRP LEU ASN GLU GLN ARG TYR TYR GLY GLY GLY TYR SEQRES 22 A 310 GLY SER THR GLN ALA THR PHE MET VAL PHE GLN ALA LEU SEQRES 23 A 310 ALA GLN TYR GLN LYS ASP ALA PRO ASP HIS GLN GLU LEU SEQRES 24 A 310 ASN LEU ASP VAL SER LEU GLN LEU PRO SER ARG SEQRES 1 Q 80 MET ARG GLY SER HIS HIS HIS HIS HIS HIS MET VAL SER SEQRES 2 Q 80 ILE GLU LYS ALA ILE VAL ARG HIS ASP GLU ARG VAL LYS SEQRES 3 Q 80 SER ALA ASN ASP ALA ILE SER LYS LEU ASN GLU LYS ASP SEQRES 4 Q 80 SER ILE GLU ASN ARG ARG LEU ALA GLN ARG GLU VAL ASN SEQRES 5 Q 80 LYS ALA PRO MET ASP VAL LYS GLU HIS LEU GLN LYS GLN SEQRES 6 Q 80 LEU ASP ALA LEU VAL ALA GLN LYS ASP ALA GLU LYS LYS SEQRES 7 Q 80 VAL ALA HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *335(H2 O) HELIX 1 1 LEU A 14 ILE A 18 5 5 HELIX 2 2 GLU A 26 GLU A 46 1 21 HELIX 3 3 GLN A 47 GLY A 52 1 6 HELIX 4 4 GLU A 54 ALA A 72 1 19 HELIX 5 5 SER A 89 VAL A 104 1 16 HELIX 6 6 ASP A 110 GLN A 126 1 17 HELIX 7 7 HIS A 140 ARG A 148 5 9 HELIX 8 8 GLU A 152 GLU A 173 1 22 HELIX 9 9 SER A 178 TYR A 194 1 17 HELIX 10 10 MET A 195 LEU A 197 5 3 HELIX 11 11 ARG A 199 MET A 213 1 15 HELIX 12 12 LYS A 217 ALA A 228 1 12 HELIX 13 13 ASP A 230 ASN A 232 5 3 HELIX 14 14 LYS A 239 LYS A 258 1 20 HELIX 15 15 PHE A 262 GLN A 273 1 12 HELIX 16 16 SER A 282 ALA A 300 1 19 HELIX 17 17 VAL Q 12 LYS Q 38 1 27 HELIX 18 18 SER Q 40 LYS Q 53 1 14 HELIX 19 19 PRO Q 55 LYS Q 77 1 23 SSBOND 1 CYS A 115 CYS A 172 1555 1555 2.07 CISPEP 1 PHE A 51 GLY A 52 0 1.43 SITE 1 AC1 6 TRP A 91 GLU A 134 PRO A 137 VAL A 138 SITE 2 AC1 6 GLN A 141 ILE A 144 SITE 1 AC2 7 GLU A 167 TYR A 208 GLN A 256 GLN A 291 SITE 2 AC2 7 GLN A 295 HOH A2256 HOH A2257 SITE 1 AC3 10 THR A 20 PRO A 21 SER A 22 GLN A 27 SITE 2 AC3 10 ILE A 30 GLY A 31 HOH A2258 HOH A2259 SITE 3 AC3 10 HOH A2260 ILE Q 18 CRYST1 53.430 81.010 87.830 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018716 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011386 0.00000